mRNA_E-siliculosus-1a_F_contig1150.985.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 393 bits (1009), Expect = 3.280e-135 Identity = 196/199 (98.49%), Postives = 198/199 (99.50%), Query Frame = 1
Query: 1 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRLKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDR++THKIDSVAE DEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE
Sbjct: 41 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 239
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 394 bits (1013), Expect = 1.040e-132 Identity = 197/199 (98.99%), Postives = 198/199 (99.50%), Query Frame = 1
Query: 1 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRLKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDR+KTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFC QYKGGIANIFEAANQFGGGVPGGVE
Sbjct: 41 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVE 239
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 396 bits (1018), Expect = 9.240e-131 Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 1
Query: 1 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRLKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDR+KTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE
Sbjct: 41 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 239
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 392 bits (1006), Expect = 1.040e-126 Identity = 196/199 (98.49%), Postives = 197/199 (98.99%), Query Frame = 1
Query: 1 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRLKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIK AGDR+KTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSD FTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE
Sbjct: 41 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 239
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.370e-49 Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 1
Query: 337 MSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
MSD+FTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE
Sbjct: 1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 87
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 168 bits (426), Expect = 8.920e-45 Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 1
Query: 337 MSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
MSD FTETLADFSFKVFYYGDELPDF WNLHTSANLSALGEKKRPIAVGGVLRRIISGSF RQYKGGIANIFEAANQFGGGVPGGVE
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVE 87
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 154 bits (390), Expect = 2.060e-44 Identity = 76/87 (87.36%), Postives = 81/87 (93.10%), Query Frame = 1
Query: 337 MSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
MSD F+ETLADFS+KVFYYGDELPD FW TSA+LSALGEKKRPIAVGGVLRRIISGSFCRQYK GIA+IFEA+NQFGGGVPGGVE
Sbjct: 1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVE 87
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 160 bits (405), Expect = 6.190e-42 Identity = 90/197 (45.69%), Postives = 123/197 (62.44%), Query Frame = 1
Query: 10 RATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAW-DSSIKAAGDRLKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
RA LAH+ GG++KAAS L++P PRN +TLE LR HP E +IA A +++ + + +I++V +EPF + + T+++ NPQ +PGP GLRFS LQ+ ++ E +A V + G LPD FW LHTSANLSA+G+K RPIAVG + RRI+ G CRQY +A FE Q+G VPGG E
Sbjct: 1084 RAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAV---EEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSS-LTPELCEAIAKLC-SVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTE 1275
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 146 bits (369), Expect = 1.950e-41 Identity = 77/99 (77.78%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 337 MSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRII------------SGSFCRQYKGGIANIFEAANQFGGGVPGGVE 597
MSD F+ TLADFS KVFYYGDELPD FW LHTSA+LSALGEKKRPIAVGGVLRRII SGSFCRQYK GIA+IFEA+NQFGGGVPGGVE
Sbjct: 1 MSDDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVE 99
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Match: A0A6H5K8P4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P4_9PHAE) HSP 1 Score: 138 bits (348), Expect = 3.670e-38 Identity = 69/77 (89.61%), Postives = 72/77 (93.51%), Query Frame = 1
Query: 1 RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRLKTHKIDSVAEAD 231
RQRRATRL HE GGIT+ ASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGD +KT +IDSVAEAD
Sbjct: 92 RQRRATRLVHERGGITEVASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDSIKTRRIDSVAEAD 168 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1150.985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1150.985.1 >prot_E-siliculosus-1a_F_contig1150.985.1 ID=prot_E-siliculosus-1a_F_contig1150.985.1|Name=mRNA_E-siliculosus-1a_F_contig1150.985.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=199bp RQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIback to top mRNA from alignment at E-siliculosus-1a_F_contig1150:2..598- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1150.985.1 ID=mRNA_E-siliculosus-1a_F_contig1150.985.1|Name=mRNA_E-siliculosus-1a_F_contig1150.985.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=597bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1150:2..598- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1150:2..598- >mRNA_E-siliculosus-1a_F_contig1150.985.1 ID=mRNA_E-siliculosus-1a_F_contig1150.985.1|Name=mRNA_E-siliculosus-1a_F_contig1150.985.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1150:2..598- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |