mRNA_E-siliculosus-1a_F_contig115.979.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig115.979.1
Unique NamemRNA_E-siliculosus-1a_F_contig115.979.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: D7G739_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G739_ECTSI)

HSP 1 Score: 413 bits (1062), Expect = 6.290e-144
Identity = 243/266 (91.35%), Postives = 249/266 (93.61%), Query Frame = 1 
Query:   34 MPSDQEDQLTFLDDTLILVISSVGLLCVTAAVLWVVRQSPDWQRADREPAGEQDGDAGLLGGRTRVVPGGREAAKAARKEAKKRAKAEFGRSSAGQKRQVKSKRSAQQQQQPRSHADRERTMEEERKERSAEALRRLKSYILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLSESREEETRRRIGLGERHFDEGSGGVGDEHGGLDGET 831
            MPSDQEDQLTFLDDTLILVISSVGLLCVTAAVLWVVRQSPDWQ+ADR+PAGEQDGDAGLLGGRTRVVPGGREAAKAARKE      AEF RSSA QKRQVKSKRSAQQQQ PRSHADRERT EEERKERSAEALRRLKSYILD +VSSL DLEVELSLPSEEIV KIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEA+RVL LSESR +ETRRRIGLGERHFDEGSGGVG EHG LDGE+
Sbjct:    1 MPSDQEDQLTFLDDTLILVISSVGLLCVTAAVLWVVRQSPDWQKADRQPAGEQDGDAGLLGGRTRVVPGGREAAKAARKEXXXXXXAEFSRSSAVQKRQVKSKRSAQQQQ-PRSHADRERTKEEERKERSAEALRRLKSYILDHQVSSLGDLEVELSLPSEEIVDKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEANRVLDLSESRIKETRRRIGLGERHFDEGSGGVGGEHGALDGES 265
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: UPI00144366B0 (DDRGK domain-containing protein 1 isoform X1 n=2 Tax=Megalopta genalis TaxID=115081 RepID=UPI00144366B0)

HSP 1 Score: 62.4 bits (150), Expect = 1.250e-7
Identity = 38/108 (35.19%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  400 EEERKERSAEALRRLKSYILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            +E+RKE   + L     YI D KV  LEDL    +L +E +V +I EL+A G  TG++ D        G F+ + + E  A+A F+ +RGR+++AE+A  ++ ++ L+
Sbjct:  183 DEDRKEDEEDLLEAFVQYIKDSKVVVLEDLAAVFNLKAENVVQRITELQANGSLTGVIDDR-------GKFIYISQEEFEAVAKFVKQRGRISIAELAENSNHLINLA 283
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: A0A0L7QVS9_9HYME (DDRGK domain-containing protein 1 n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QVS9_9HYME)

HSP 1 Score: 60.5 bits (145), Expect = 5.230e-7
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:  400 EEERKERSAEALRRLKSYILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            ++E KE     L     YI + KV  LEDL     L +  +V +I EL+A G+ TG++ D        G F+ + + E+ A+A F+ +RGR+++AE+A  +S+++ LS
Sbjct:  171 DQEEKENEENLLESFLQYIKENKVVILEDLAAHFGLKTASVVDRIRELQATGNLTGVIDDR-------GKFIYISQEELEAVAKFVKQRGRVSIAELAENSSQLINLS 271
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: A0A7S0DBX8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DBX8_MICPS)

HSP 1 Score: 58.9 bits (141), Expect = 9.860e-7
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  394 TMEEERKERSAEALRRLKSYILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEAS 705
            T+EEE  E S   L     YI ++KV  LE+L  E  L +++ V++++ LE  G  TG++ D        G F+ +   EM  +AAFIN +GR+ +AE+A ++S
Sbjct:  118 TVEEEMAEESGGLLAEFVDYIAEKKVVVLEELAAEFGLRTQDAVSRVQALEQMGRITGVMDDR-------GKFIFISRDEMAEVAAFINRKGRVAIAELARKSS 214
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: UPI000623A71C (DDRGK domain-containing protein 1 n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI000623A71C)

HSP 1 Score: 59.7 bits (143), Expect = 1.010e-6
Identity = 34/108 (31.48%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:  400 EEERKERSAEALRRLKSYILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            E+E KE   + L++  +YI + KV  LEDL     L +  ++ +I+EL+A G+ TG++ D        G F+ + E E+  +A F+ +RGR+++ E+A  ++ ++ L+
Sbjct:  180 EQENKEYEEDLLQKFLAYIKENKVLVLEDLAAHFGLKTASVIERIQELKADGNLTGVIDDR-------GKFIYISEDELYTIATFVQQRGRISITELAENSNNLINLT 280
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: A0A6P8XI06_DROAB (DDRGK domain-containing protein 1 n=1 Tax=Drosophila albomicans TaxID=7291 RepID=A0A6P8XI06_DROAB)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-6
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:  451 YILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            YI D KV  LEDL     L +++ + +I+EL+A G  TG++ D        G F+ V E E+ A+A FI +RGR+++AE+A  ++ ++ L+
Sbjct:  215 YIKDNKVVLLEDLATAFKLKTQQAIERIQELQANGTITGVIDDR-------GKFIYVSEAELAAVAKFIKQRGRVSIAELAESSNNLINLT 298
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: DDRGK_DROWI (DDRGK domain-containing protein 1 n=1 Tax=Drosophila willistoni TaxID=7260 RepID=DDRGK_DROWI)

HSP 1 Score: 58.9 bits (141), Expect = 2.020e-6
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  451 YILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            YI D KV  LEDL V   L +++ + +I+EL+A G  TG++ D        G F+ + + E+ A+A FI +RGR+++AE+A  ++ ++ L+
Sbjct:  214 YIKDNKVVLLEDLAVAFKLKTQQAIERIQELQANGSLTGVIDDR-------GKFIYISQEELAAVAKFIKQRGRVSIAELAESSNNLINLT 297
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: DDRGK_DROMO (DDRGK domain-containing protein 1 n=8 Tax=Drosophila TaxID=32281 RepID=DDRGK_DROMO)

HSP 1 Score: 58.9 bits (141), Expect = 2.050e-6
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  451 YILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            YI D KV  LEDL     L +++ + +I+EL+A G  TG++ D        G F+ V E E+ A+A FI +RGR+++A++A  +++++ L+
Sbjct:  217 YIKDNKVVLLEDLATAFKLKTQQAIERIQELQANGTITGVIDDR-------GKFIYVSEAELAAVAKFIKQRGRVSIADLAESSNKLINLT 300
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: A0A6P4GL47_DROTK (DDRGK domain-containing protein 1 n=2 Tax=Drosophila takahashii TaxID=29030 RepID=A0A6P4GL47_DROTK)

HSP 1 Score: 58.9 bits (141), Expect = 2.060e-6
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:  451 YILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLS 723
            YI D KV  LEDL V   L +++ + +I+EL+A G  TG++ D        G F+ V E E+ A+A FI +RGR+++AE+A  ++ ++ L+
Sbjct:  216 YIRDNKVVVLEDLAVAFKLKTQQAIDRIQELQADGTITGVIDDR-------GKFIYVSEEELAAVAKFIKQRGRVSIAELAESSNNLINLT 299
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Match: UPI001BB11BFE (DDRGK domain-containing protein 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB11BFE)

HSP 1 Score: 58.9 bits (141), Expect = 2.260e-6
Identity = 33/97 (34.02%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:  448 SYILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSSGGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLSESREE 738
            +YI D KV  LEDL  + ++ ++E + +++EL+A G  TG++ D        G F+ + E E+ A+A FI +RGR+++AE+A  +++++ L+   +E
Sbjct:  234 NYIKDMKVVLLEDLGAQFNIRTQEAINRVQELQAEGRLTGVIDDR-------GKFIYISEEELEAVAKFIRQRGRVSIAELAEASNQLISLNPENKE 323
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig115.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G739_ECTSI6.290e-14491.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI00144366B01.250e-735.19DDRGK domain-containing protein 1 isoform X1 n=2 T... [more]
A0A0L7QVS9_9HYME5.230e-734.26DDRGK domain-containing protein 1 n=1 Tax=Habropod... [more]
A0A7S0DBX8_MICPS9.860e-736.54Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
UPI000623A71C1.010e-631.48DDRGK domain-containing protein 1 n=1 Tax=Linepith... [more]
A0A6P8XI06_DROAB1.500e-637.36DDRGK domain-containing protein 1 n=1 Tax=Drosophi... [more]
DDRGK_DROWI2.020e-636.26DDRGK domain-containing protein 1 n=1 Tax=Drosophi... [more]
DDRGK_DROMO2.050e-636.26DDRGK domain-containing protein 1 n=8 Tax=Drosophi... [more]
A0A6P4GL47_DROTK2.060e-638.46DDRGK domain-containing protein 1 n=2 Tax=Drosophi... [more]
UPI001BB11BFE2.260e-634.02DDRGK domain-containing protein 1-like n=1 Tax=Lyt... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig115contigE-siliculosus-1a_F_contig115:47563..49340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size831
Model size832
Exons3
Ec32 orthologEc-01_011150.1
Ec32 ortholog descriptionDDRGK domain containing protein
Hectar predicted targeting categorysignal anchor
BRITEko00000,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsKOG3054@1,KOG3054@2759
EggNOG free text desc.positive regulation of I-kappaB phosphorylation
GOsGO:0001085,GO:0001103,GO:0001501,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006355,GO:0006357,GO:0006464,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010952,GO:0012505,GO:0016020,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0023051,GO:0023056,GO:0030162,GO:0030334,GO:0030335,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0033143,GO:0033146,GO:0033554,GO:0034976,GO:0036211,GO:0040012,GO:0040017,GO:0042127,GO:0042175,GO:0042176,GO:0042325,GO:0042327,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043122,GO:0043123,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045862,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051216,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051270,GO:0051272,GO:0051336,GO:0051345,GO:0051716,GO:0051726,GO:0052547,GO:0060255,GO:0060341,GO:0060548,GO:0061136,GO:0061448,GO:0065007,GO:0065009,GO:0070013,GO:0070491,GO:0070647,GO:0071569,GO:0071704,GO:0080090,GO:0090068,GO:0098827,GO:1901564,GO:1901800,GO:1901987,GO:1901989,GO:1902531,GO:1902533,GO:1902680,GO:1902806,GO:1902808,GO:1903025,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903719,GO:1903721,GO:1903827,GO:1903829,GO:1905048,GO:1905050,GO:1905550,GO:1905552,GO:1905636,GO:1990564,GO:1990592,GO:2000058,GO:2000060,GO:2000112,GO:2000145,GO:2000147,GO:2000677,GO:2000679,GO:2001141
KEGG koko:K15437
Preferred nameDDRGK1
Seed eggNOG ortholog2880.D7G739
Seed ortholog evalue4.3e-115
Seed ortholog score421.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig115.979.1prot_E-siliculosus-1a_F_contig115.979.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig115 47563..49340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927663.914936-CDS-E-siliculosus-1a_F_contig115:47562..479251622927663.914936-CDS-E-siliculosus-1a_F_contig115:47562..47925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig115 47563..47925 -
1696318629.9578016-CDS-E-siliculosus-1a_F_contig115:47562..479251696318629.9578016-CDS-E-siliculosus-1a_F_contig115:47562..47925Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig115 47563..47925 -
1622927663.9302046-CDS-E-siliculosus-1a_F_contig115:48668..488001622927663.9302046-CDS-E-siliculosus-1a_F_contig115:48668..48800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig115 48669..48800 -
1696318629.9748638-CDS-E-siliculosus-1a_F_contig115:48668..488001696318629.9748638-CDS-E-siliculosus-1a_F_contig115:48668..48800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig115 48669..48800 -
1622927663.9492674-CDS-E-siliculosus-1a_F_contig115:49004..493401622927663.9492674-CDS-E-siliculosus-1a_F_contig115:49004..49340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig115 49005..49340 -
1696318629.9869611-CDS-E-siliculosus-1a_F_contig115:49004..493401696318629.9869611-CDS-E-siliculosus-1a_F_contig115:49004..49340Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig115 49005..49340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig115.979.1

>prot_E-siliculosus-1a_F_contig115.979.1 ID=prot_E-siliculosus-1a_F_contig115.979.1|Name=mRNA_E-siliculosus-1a_F_contig115.979.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=277bp
VLRTHSSSSTTMPSDQEDQLTFLDDTLILVISSVGLLCVTAAVLWVVRQS
PDWQRADREPAGEQDGDAGLLGGRTRVVPGGREAAKAARKEAKKRAKAEF
GRSSAGQKRQVKSKRSAQQQQQPRSHADRERTMEEERKERSAEALRRLKS
YILDRKVSSLEDLEVELSLPSEEIVAKIEELEARGDFTGILVDDARGSSS
GGSFVRVGEGEMRALAAFINERGRLTLAEVAAEASRVLGLSESREEETRR
RIGLGERHFDEGSGGVGDEHGGLDGET
back to top

mRNA from alignment at E-siliculosus-1a_F_contig115:47563..49340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig115.979.1 ID=mRNA_E-siliculosus-1a_F_contig115.979.1|Name=mRNA_E-siliculosus-1a_F_contig115.979.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1778bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig115:47563..49340- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCTACGCACACACTCGTCCTCTTCGACAACCATGCCATCAGACCAAGA
AGACCAGCTCACGTTCCTGGACGATACGCTTATTTTGGTAATCTCTTCGG
TAGGGCTCCTGTGCGTAACGGCGGCAGTCTTGTGGGTTGTCCGGCAGTCG
CCAGATTGGCAGAGGGCAGACCGTGAACCCGCAGGGGAGCAGGATGGCGA
CGCGGGCTTGCTCGGCGGAAGAACGAGAGTTGTCCCTGGCGGGCGCGAAG
CGGCGAAGGCGGCTCGAAAAGAAGCCAAGAAACGAGCGAAGGCAGAGTTC
GGCCGATCTTCGGCTGGGCAGAAGCGTCAAGTGAAGGTGTGTACAAGCAA
TACCGCGGTCATGTTCAGCAGTAGCTCAAACTATTGCTGTACAACCACCG
AGTTTGGTTTAGTGGGGGACCACCTGTACCTGGTTCTCCGGTCTCCGGTC
TACTCAAATGGAGGGTGTGCTCGGAATCCGTGCCCGTCATATTTTCACAT
GTTTTGCTACTTCCGCCGGAAACTCTTGAAACCATGGCAGAGTAAGCGCT
CAGCACAGCAGCAGCAGCAGCCGCGTTCTCACGCGGACAGGGAGCGCACA
ATGGAGGAGGAGCGGAAGGAGAGGTCTGCGGAAGCTCTGCGGCGACTGAA
GAGCTACATTCTGGATCGCAAGGTACGGAAACAACTAAACCACTAATTTT
GTAAGGCGCCCTCGGTCGAAAAGCTCCCCTTTGCAGAATTTGTCAGACAG
TGGCGGATGACGCGTGCGAAACGAGGGGGCGGTTGCGATATGCATTCACC
CAAATGCAATAATCTTTCAGAACTGCCCACTGCTATGTACACACCTGAAG
TTTGTGGGTAACATGATGTTGCGCTAGGATCACAAGTGCCACAGCAGTGT
TGCACATTGGACCCAGATCTTCGATAGGTTAAAGCTAAGGCTTACAGATA
GGTATGTTGTTCAACCGTAGAGTACGTGGGATGGGTGACGCGTGTGGTCG
ATGTGTAGGCGTCGAAATAGGTGGTAACTGGTTGCTGCTGAGTCCACACA
GCAGATCCGACTATGTATTGCACTCAAGCAGCCAGGTTTCAAGAATACAC
GCCTTGGGTGGCTTTGAAGCCAAGCTAACGCCTGATGCGCTGGTCATGGC
GGTGTTCAATGATGATGTGGTTCGACGCGGCTGAACACGTTGCAATTTCA
GGCCATGTCAACACCACAGCCACATCCATTGAATGGGTAGGATATCCCCC
CAGGTCTTGGCGGCAAGCAGCATGTAGGAGCCATGTGCACACGAGCCTCC
GAAACACAGCAGTAGCGCTAGCGATCCTTACCAAAGCTGTGACACACAAG
GTCAGCTCCTCAATTAATGTCCCATGTCCCAACTTCCACGATCCCCCGCT
TCCTTTCTCGAAAAGGTGTCATCTTTGGAAGATCTAGAGGTAGAACTTAG
TTTGCCATCAGAGGAGATCGTGGCTAAAATCGAGGAGCTGGAAGCCCGCG
GTGATTTCACGGGCATTCTGGTCGACGACGCGCGAGGTAGCAGCAGCGGT
GGCTCTTTCGTTCGTGTTGGCGAGGGCGAGATGCGCGCTCTTGCGGCCTT
TATCAACGAGCGGGGGCGACTGACGCTTGCCGAAGTTGCCGCTGAGGCGA
GTAGGGTGCTGGGTCTTTCAGAATCACGAGAAGAAGAGACCCGAAGAAGA
ATTGGTCTTGGTGAGCGGCATTTTGATGAGGGGAGTGGCGGGGTGGGGGA
CGAACACGGTGGCTTAGACGGAGAGACT
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig115:47563..49340-

>mRNA_E-siliculosus-1a_F_contig115.979.1 ID=mRNA_E-siliculosus-1a_F_contig115.979.1|Name=mRNA_E-siliculosus-1a_F_contig115.979.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig115:47563..49340- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCTACGCACACACTCGTCCTCTTCGACAACCATGCCATCAGACCAAGA
AGACCAGCTCACGTTCCTGGACGATACGCTTATTTTGGTAATCTCTTCGG
TAGGGCTCCTGTGCGTAACGGCGGCAGTCTTGTGGGTTGTCCGGCAGTCG
CCAGATTGGCAGAGGGCAGACCGTGAACCCGCAGGGGAGCAGGATGGCGA
CGCGGGCTTGCTCGGCGGAAGAACGAGAGTTGTCCCTGGCGGGCGCGAAG
CGGCGAAGGCGGCTCGAAAAGAAGCCAAGAAACGAGCGAAGGCAGAGTTC
GGCCGATCTTCGGCTGGGCAGAAGCGTCAAGTGAAGGTGCTACGCACACA
CTCGTCCTCTTCGACAACCATGCCATCAGACCAAGAAGACCAGCTCACGT
TCCTGGACGATACGCTTATTTTGGTAATCTCTTCGGTAGGGCTCCTGTGC
GTAACGGCGGCAGTCTTGTGGGTTGTCCGGCAGTCGCCAGATTGGCAGAG
GGCAGACCGTGAACCCGCAGGGGAGCAGGATGGCGACGCGGGCTTGCTCG
GCGGAAGAACGAGAGTTGTCCCTGGCGGGCGCGAAGCGGCGAAGGCGGCT
CGAAAAGAAGCCAAGAAACGAGCGAAGGCAGAGTTCGGCCGATCTTCGGC
TGGGCAGAAGCGTCAAGTGAAGAGTAAGCGCTCAGCACAGCAGCAGCAGC
AGCCGCGTTCTCACGCGGACAGGGAGCGCACAATGGAGGAGGAGCGGAAG
GAGAGGTCTGCGGAAGCTCTGCGGCGACTGAAGAGCTACATTCTGGATCG
CAAGAGTAAGCGCTCAGCACAGCAGCAGCAGCAGCCGCGTTCTCACGCGG
ACAGGGAGCGCACAATGGAGGAGGAGCGGAAGGAGAGGTCTGCGGAAGCT
CTGCGGCGACTGAAGAGCTACATTCTGGATCGCAAGGTGTCATCTTTGGA
AGATCTAGAGGTAGAACTTAGTTTGCCATCAGAGGAGATCGTGGCTAAAA
TCGAGGAGCTGGAAGCCCGCGGTGATTTCACGGGCATTCTGGTCGACGAC
GCGCGAGGTAGCAGCAGCGGTGGCTCTTTCGTTCGTGTTGGCGAGGGCGA
GATGCGCGCTCTTGCGGCCTTTATCAACGAGCGGGGGCGACTGACGCTTG
CCGAAGTTGCCGCTGAGGCGAGTAGGGTGCTGGGTCTTTCAGAATCACGA
GAAGAAGAGACCCGAAGAAGAATTGGTCTTGGTGAGCGGCATTTTGATGA
GGGGAGTGGCGGGGTGGGGGACGAACACGGTGGCTTAGACGGAGAGACTG
TGTCATCTTTGGAAGATCTAGAGGTAGAACTTAGTTTGCCATCAGAGGAG
ATCGTGGCTAAAATCGAGGAGCTGGAAGCCCGCGGTGATTTCACGGGCAT
TCTGGTCGACGACGCGCGAGGTAGCAGCAGCGGTGGCTCTTTCGTTCGTG
TTGGCGAGGGCGAGATGCGCGCTCTTGCGGCCTTTATCAACGAGCGGGGG
CGACTGACGCTTGCCGAAGTTGCCGCTGAGGCGAGTAGGGTGCTGGGTCT
TTCAGAATCACGAGAAGAAGAGACCCGAAGAAGAATTGGTCTTGGTGAGC
GGCATTTTGATGAGGGGAGTGGCGGGGTGGGGGACGAACACGGTGGCTTA
GACGGAGAGACT
back to top