mRNA_E-siliculosus-1a_F_contig1149.972.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI) HSP 1 Score: 453 bits (1166), Expect = 1.090e-144 Identity = 230/238 (96.64%), Postives = 235/238 (98.74%), Query Frame = 3
Query: 357 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAETPPSDDASPTPPPASSRGSRRLGGAHRR 1070
MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHV+SISTHKLVLLF A+SAGLAA+AVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVG+CMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAETPP+D ASP PPPASSRGSRRLGGAHRR
Sbjct: 1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAETPPTDGASPAPPPASSRGSRRLGGAHRR 238
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI) HSP 1 Score: 308 bits (789), Expect = 1.320e-91 Identity = 159/261 (60.92%), Postives = 197/261 (75.48%), Query Frame = 3
Query: 96 GSSSLSAEQAAADTYA--YTLKCETGFIVAGLQEGEAASAFVRVLCTLITVSVVSAWVTRRDCIYKLPLFFSHWLSGLVHQLVYLIGATMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDM 872
GS+ S++ A A YA ++LKC GF V GLQEGEA +RV+ TLIT+SV SAW +RR I KL LFFSHWLSGL+HQLV++ ATM+SVCWAG++L IKTLKF EL ASNMLAITNLAICVNL+LIVMS R S VRS ST L+L+F A+S G+AA++VPFW V+SGT FW + H++++++ F VEF VG+CM VIV WL++FR TEIK+ W MHA +RYYFGLTL+ T NL LG+CGTIYV+ DM
Sbjct: 10 GSTEYSSQAAQAALYAEMFSLKCNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGDM 270
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI) HSP 1 Score: 284 bits (726), Expect = 2.570e-82 Identity = 143/277 (51.62%), Postives = 196/277 (70.76%), Query Frame = 3
Query: 150 LKCETGFIVAGLQEGEAASAFVRVLCTLITVSVVSAWVTRRDCIYKLPLFFSHWLSGLVHQLVYLIGATMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDER 980
L CETGF GLQEGE +RVL TL++VSVVSAW + + +L LFF+HWLSGLV L +++ M++VCW +L FIK +KF+E +SNM+AIT+LAICVNL+LIV S R + V+S+S+ L+ L AIS G+ ++ VP W + GTGFW + ++ ++ V++S F +EF+VG+CMFVI++WLLLFRM E+KECW + A +RYYF LTLLGT N+ +G+C T++VI DM P L I+SW R + +ALDT VL+ VL K +DER
Sbjct: 5 LSCETGFTAIGLQEGEDKITPIRVLSTLVSVSVVSAWCSWTK-VKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDER 280
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI) HSP 1 Score: 239 bits (611), Expect = 2.500e-67 Identity = 119/212 (56.13%), Postives = 152/212 (71.70%), Query Frame = 3
Query: 357 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAETP 992
M+ VCWAG N+ F+K LKFLEL ASNMLAITNLAIC NL+L++MS R + V+S S+ LV L A+S +A A PFW TV+SGTGF E++R +++ +S F +EFLVG+CMFVIV+WLLLFR+ E+KECW +HA +RYYFGLTL+GT NL LGVCGTIYV+ LL++ +W FR + IALDT VL+ VL + E P
Sbjct: 1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVLGVPAATGHDEGP 212
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE) HSP 1 Score: 232 bits (592), Expect = 5.290e-65 Identity = 117/208 (56.25%), Postives = 149/208 (71.63%), Query Frame = 3
Query: 354 TMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDE 977
TMISVCW GE L FIK LK+LE +SNMLAITNLAIC+NL+L+V S R S V S+ST LVLLF AIS AA +VPFW +TV+SGT FW +K +++++S ++EF+VG+CMF+IVSWL+ FRM IKECW +HA +RYYF LT++GT NL LG+ G YV A L+ +W FR +ALDTIVL+ VL T+ +DE
Sbjct: 7 TMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLYGVLGTRHMDE 214
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI) HSP 1 Score: 228 bits (580), Expect = 2.220e-63 Identity = 117/247 (47.37%), Postives = 171/247 (69.23%), Query Frame = 3
Query: 315 SGLVHQLVYLIGATMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERA-ETPPSDDASPT----PPPASSRG 1040
+G++ L +L+ M++VCWAG+NL IKT+KF+EL +S+MLA+T+LAICVNL+LIV S R V+S+S+ L+ L AIS G+ A VP W ++ GT FW + ++ ++ V++S F +EF+VG+CMFVIV+WLLLFR+ E+KECW +HA +RYY LT+LGT +L++G+C T++V+ + L I++W FR + IALDT VL+ VL K +DER PSD S + PPP++ G
Sbjct: 10 TGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVLREKDMDERVGNARPSDINSNSTVGVPPPSTLHG 256
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE) HSP 1 Score: 218 bits (554), Expect = 6.730e-60 Identity = 108/224 (48.21%), Postives = 149/224 (66.52%), Query Frame = 3
Query: 315 SGLVHQLVYLIGATMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAE 986
SG + L + M+S C+A NL IKT+ F+ + +SNMLA TNL IC+NL+LIV S R + V+++S+ +++ + +SA LAA VP W TV+ GT FW + ++F+++S +++EFLVG+CM VIV WL +FRMTEIKECW H+ +RYYF LTL GT NL LG+CG YV D PL I+SW FR + I+ DT+VL+ L S+DERAE
Sbjct: 9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLYGALREGSIDERAE 232
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI) HSP 1 Score: 206 bits (524), Expect = 2.710e-57 Identity = 107/174 (61.49%), Postives = 130/174 (74.71%), Query Frame = 3
Query: 351 ATMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSH-VRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISD 869
ATMISVCW G NL IKT KFLEL + NMLA+TNLAIC+NL+L+VMS Q V S+S+ L+++ IS G AA A PFW +LSGTGF+ EN+R +++ IS F +EF VG+CMFVIV+WLLLFRMTEIKECW MHA +RYYFGLTL+ T NL LG+CG IY+I D
Sbjct: 3 ATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGD 176
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE) HSP 1 Score: 203 bits (516), Expect = 2.460e-55 Identity = 114/233 (48.93%), Postives = 143/233 (61.37%), Query Frame = 3
Query: 306 HWLSGLVHQLVYLIGATMISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSR---------------------------------------RPQSH------VRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISD 869
H+ GL++QL+ L+ ATMISVCWAG NL IKT KFLEL + NMLA TNLAIC+NL+L+VMS + QSH V S+S+ L+++ IS G AA A PFW +LSGTGF+ EN+R +++ +S F +EF VG+CMFVIV+WLLLFRMTEIKECW HA +RYYFGLTL+ T NL LG+CG IY+I D
Sbjct: 7 HFSCGLLYQLLILMQATMISVCWAGANLIKLIKTFKFLELASVNMLATTNLAICINLALVVMSESINNTSPSAPHGICSLLPLSGTSVCGLLSLVLPTVGDTAQLQSHGDQQPGVNSLSSPLLIMVSLVISIGAAAAAAPFWDFIILSGTGFFPETENQRGSDWITVSRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKTHARIRYYFGLTLIATGVNLILGICGVIYLIGD 239
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI) HSP 1 Score: 200 bits (508), Expect = 3.260e-55 Identity = 102/173 (58.96%), Postives = 127/173 (73.41%), Query Frame = 3
Query: 357 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVRSISTHKLVLLFAAISAGLAAMAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGMCMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMA 875
MISVCW GE L FIK LK+LE +SNMLAITNLAIC+NL+L+V S R S V+S+ST LVLLF AIS AA +VPFW +TV+SGT FW +K +++++S ++EF+VG+CMFVIVSWL+ FRM IKECW +HA +RYYF LTL+ T NL LG+ G YV D A
Sbjct: 1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYVFRDNA 173 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1149.972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1149.972.1 >prot_E-siliculosus-1a_F_contig1149.972.1 ID=prot_E-siliculosus-1a_F_contig1149.972.1|Name=mRNA_E-siliculosus-1a_F_contig1149.972.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=340bp MATSSSAAALEADDGSSSLSAEQAAADTYAYTLKCETGFIVAGLQEGEAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1149:26950..35952- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1149.972.1 ID=mRNA_E-siliculosus-1a_F_contig1149.972.1|Name=mRNA_E-siliculosus-1a_F_contig1149.972.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9003bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1149:26950..35952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1149:26950..35952- >mRNA_E-siliculosus-1a_F_contig1149.972.1 ID=mRNA_E-siliculosus-1a_F_contig1149.972.1|Name=mRNA_E-siliculosus-1a_F_contig1149.972.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2040bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1149:26950..35952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |