mRNA_E-siliculosus-1a_F_contig11488.968.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11488.968.1
Unique NamemRNA_E-siliculosus-1a_F_contig11488.968.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11488.968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11488contigE-siliculosus-1a_F_contig11488:699..1330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size300
Model size300
Exons2
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-06_008970.2
Ec32 ortholog descriptionexpressed unknown protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927662.0871015-CDS-E-siliculosus-1a_F_contig11488:698..8441622927662.0871015-CDS-E-siliculosus-1a_F_contig11488:698..844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11488 699..844 -
1696318629.258052-CDS-E-siliculosus-1a_F_contig11488:698..8441696318629.258052-CDS-E-siliculosus-1a_F_contig11488:698..844Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11488 699..844 -
1622927662.1048684-CDS-E-siliculosus-1a_F_contig11488:1176..13301622927662.1048684-CDS-E-siliculosus-1a_F_contig11488:1176..1330Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11488 1177..1330 -
1696318629.2692099-CDS-E-siliculosus-1a_F_contig11488:1176..13301696318629.2692099-CDS-E-siliculosus-1a_F_contig11488:1176..1330Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11488 1177..1330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11488.968.1prot_E-siliculosus-1a_F_contig11488.968.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11488 699..1330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11488.968.1

>prot_E-siliculosus-1a_F_contig11488.968.1 ID=prot_E-siliculosus-1a_F_contig11488.968.1|Name=mRNA_E-siliculosus-1a_F_contig11488.968.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=100bp
MTPTKDGATLVPAAEGEATPAPTKVSRAVRFTASPTSSASAVSTSSIMAP
SGAPTMMTATPTSSPTMDADSPTVAPTMIPTDMPPPLLETTEAPVLDGHV
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mRNA from alignment at E-siliculosus-1a_F_contig11488:699..1330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11488.968.1 ID=mRNA_E-siliculosus-1a_F_contig11488.968.1|Name=mRNA_E-siliculosus-1a_F_contig11488.968.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11488:699..1330- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCCCTACCAAGGACGGAGCTACGTTGGTGCCTGCGGCGGAGGGGGA
GGCGACCCCCGCGCCCACCAAAGTCAGCCGCGCCGTCAGGTTCACTGCCA
GCCCCACGAGCTCGGCGTCCGCAGTATCGACGTCCTCTATCATGGCCCCG
TCGGGTAAGGGTTTTACACATGAGCCTGTTGTCAGTTACGTTTATTCATT
TGTGTGCCCTTGCATCGAGGGCCCCCAAGAGCAGGCCGGGGGCGTGTGTT
TTCGATGGTGCTGCCGCACCCCGTTCGTGTCGAGGGCGGACCCCCTTTCC
GGCTACTTCCGCGATACGGTTGACCCGCATCCAAGTTCATTACTGCTTGT
GATTTGCAAGACGGAACGGTCCTGGTTCATTTTCTAGAATAGATTATTGG
TTCCAGCCGCGAAATGCACACAAAGCGATCTGGATGACCACCTCACCGCC
CTCTCCCTGCTGTTTAACTTCTCCGCCACCAACCAGGCGCGCCCACCATG
ATGACGGCCACCCCCACCTCGTCGCCGACAATGGACGCTGACTCCCCCAC
CGTGGCCCCAACCATGATTCCCACTGATATGCCGCCACCCCTCCTGGAGA
CGACGGAGGCCCCCGTCCTCGACGGGCATGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11488:699..1330-

>mRNA_E-siliculosus-1a_F_contig11488.968.1 ID=mRNA_E-siliculosus-1a_F_contig11488.968.1|Name=mRNA_E-siliculosus-1a_F_contig11488.968.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11488:699..1330- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACCCCTACCAAGGACGGAGCTACGTTGGTGCCTGCGGCGGAGGGGGA
GGCGACCCCCGCGCCCACCAAAGTCAGCCGCGCCGTCAGGTTCACTGCCA
GCCCCACGAGCTCGGCGTCCGCAGTATCGACGTCCTCTATCATGGCCCCG
TCGGATGACCCCTACCAAGGACGGAGCTACGTTGGTGCCTGCGGCGGAGG
GGGAGGCGACCCCCGCGCCCACCAAAGTCAGCCGCGCCGTCAGGTTCACT
GCCAGCCCCACGAGCTCGGCGTCCGCAGTATCGACGTCCTCTATCATGGC
CCCGTCGGGCGCGCCCACCATGATGACGGCCACCCCCACCTCGTCGCCGA
CAATGGACGCTGACTCCCCCACCGTGGCCCCAACCATGATTCCCACTGAT
ATGCCGCCACCCCTCCTGGAGACGACGGAGGCCCCCGTCCTCGACGGGCA
TGTCGCGCGCCCACCATGATGACGGCCACCCCCACCTCGTCGCCGACAAT
GGACGCTGACTCCCCCACCGTGGCCCCAACCATGATTCCCACTGATATGC
CGCCACCCCTCCTGGAGACGACGGAGGCCCCCGTCCTCGACGGGCATGTC
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