mRNA_E-siliculosus-1a_F_contig1148.966.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1148.966.1
Unique NamemRNA_E-siliculosus-1a_F_contig1148.966.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: D7FVK8_ECTSI (Asparagine synthetase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.410e-22
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:   49 MQNTIRTLRSRVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            MQNTIRTLR+RVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC
Sbjct:    1 MQNTIRTLRARVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 52
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A836CNR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNR6_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.510e-7
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   49 MQNTIRTLRSRVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            M++ IRTL+ R+ + GT    G N+VAFSGGVDSS+VAALVH  FP +S AC
Sbjct:    1 MRSLIRTLQRRIEAEGT--LRGHNLVAFSGGVDSSVVAALVHEVFPSNSLAC 50
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A2D4CE54_PYTIN (NAD_synthase domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE54_PYTIN)

HSP 1 Score: 51.6 bits (122), Expect = 5.560e-6
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:   76 SRVLSLGTSAADG--KNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            SR +++   A DG  +++VAFSGGVDSSLVAALVHH FP SS AC
Sbjct:   21 SRDVAVAPHARDGAXRHVVAFSGGVDSSLVAALVHHVFPESSAAC 65
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A7R9YC16_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YC16_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.110e-6
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   25 TRAHGEEAM---QNTIRTLRSRVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            T A GEE      + +  L +RV  +G  +  G NIVA+SGGVDSS+VAAL H AFP +S AC
Sbjct:   39 TWALGEEERPRADSLVERLLARVRQMGLQSRQGVNIVAYSGGVDSSVVAALCHRAFPGNSIAC 101
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A6V1PUF6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PUF6_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 1.070e-5
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   61 IRTLRSRVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            I  L +RV +LGT    G NI+AFSGGVDSSL AALVH  FP++S AC
Sbjct:    8 IDLLLARVSNLGTRR--GSNIIAFSGGVDSSLSAALVHKVFPQNSSAC 53
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A6U0X6F4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0X6F4_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.560e-5
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  112 GKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            GKNIVAFSGGVDSSLVAALVH   P SS AC
Sbjct:   21 GKNIVAFSGGVDSSLVAALVHRVAPASSLAC 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A7S2W2V8_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 7.300e-5
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  112 GKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            GKNIVAFSGGVDSSLVAALVH   P SS AC
Sbjct:   21 GKNIVAFSGGVDSSLVAALVHRVAPASSLAC 51
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Match: A0A6G0W843_9STRA (Asparagine synthetase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W843_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.700e-5
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   61 IRTLRSRVLSLGTSAADGKNIVAFSGGVDSSLVAALVHHAFPRSSQAC 204
            ++ L SRV   G++  D  N+VAFSGGVDSSLVAA+VH  FP +S AC
Sbjct:    2 LQRLLSRVRQTGST--DRLNVVAFSGGVDSSLVAAVVHKTFPENSIAC 47
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1148.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVK8_ECTSI2.410e-2298.08Asparagine synthetase domain-containing protein n=... [more]
A0A836CNR6_9STRA6.510e-759.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2D4CE54_PYTIN5.560e-664.44NAD_synthase domain-containing protein n=1 Tax=Pyt... [more]
A0A7R9YC16_9STRA6.110e-650.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6V1PUF6_HETAK1.070e-562.50Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6U0X6F4_9STRA5.560e-583.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2W2V8_9STRA7.300e-583.87Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A6G0W843_9STRA9.700e-558.33Asparagine synthetase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1148contigE-siliculosus-1a_F_contig1148:35912..36115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size204
Model size204
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGs2RYIH@2759,COG1606@1
EggNOG free text desc.tRNA processing
Seed eggNOG ortholog2880.D7FVK8
Seed ortholog evalue5.4e-19
Seed ortholog score99.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927662.0099254-CDS-E-siliculosus-1a_F_contig1148:35911..361151622927662.0099254-CDS-E-siliculosus-1a_F_contig1148:35911..36115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1148 35912..36115 +
1696318629.246871-CDS-E-siliculosus-1a_F_contig1148:35911..361151696318629.246871-CDS-E-siliculosus-1a_F_contig1148:35911..36115Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1148 35912..36115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1148.966.1prot_E-siliculosus-1a_F_contig1148.966.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1148 35912..36115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1148.966.1

>prot_E-siliculosus-1a_F_contig1148.966.1 ID=prot_E-siliculosus-1a_F_contig1148.966.1|Name=mRNA_E-siliculosus-1a_F_contig1148.966.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=68bp
ISSPYWGQTRAHGEEAMQNTIRTLRSRVLSLGTSAADGKNIVAFSGGVDS
SLVAALVHHAFPRSSQAC
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mRNA from alignment at E-siliculosus-1a_F_contig1148:35912..36115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1148.966.1 ID=mRNA_E-siliculosus-1a_F_contig1148.966.1|Name=mRNA_E-siliculosus-1a_F_contig1148.966.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=204bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:35912..36115+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCAGCAGTCCGTACTGGGGGCAGACCAGAGCGCACGGCGAAGAGGCCAT
GCAAAACACAATTCGCACGCTCAGATCACGGGTGCTCTCGCTGGGTACAT
CGGCCGCTGATGGGAAGAACATCGTAGCCTTTTCCGGCGGCGTGGATTCG
TCCTTGGTGGCCGCGTTGGTGCATCATGCCTTTCCGAGGAGTAGTCAGGC
CTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1148:35912..36115+

>mRNA_E-siliculosus-1a_F_contig1148.966.1 ID=mRNA_E-siliculosus-1a_F_contig1148.966.1|Name=mRNA_E-siliculosus-1a_F_contig1148.966.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:35912..36115+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCAGCAGTCCGTACTGGGGGCAGACCAGAGCGCACGGCGAAGAGGCCAT
GCAAAACACAATTCGCACGCTCAGATCACGGGTGCTCTCGCTGGGTACAT
CGGCCGCTGATGGGAAGAACATCGTAGCCTTTTCCGGCGGCGTGGATTCG
TCCTTGGTGGCCGCGTTGGTGCATCATGCCTTTCCGAGGAGTAGTCAGGC
CTGCATCAGCAGTCCGTACTGGGGGCAGACCAGAGCGCACGGCGAAGAGG
CCATGCAAAACACAATTCGCACGCTCAGATCACGGGTGCTCTCGCTGGGT
ACATCGGCCGCTGATGGGAAGAACATCGTAGCCTTTTCCGGCGGCGTGGA
TTCGTCCTTGGTGGCCGCGTTGGTGCATCATGCCTTTCCGAGGAGTAGTC
AGGCCTGC
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