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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1148.965.1 vs. uniprot
Match: D7FVK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK7_ECTSI) HSP 1 Score: 265 bits (676), Expect = 1.050e-85 Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 1
Query: 175 MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALADKLDPKLGEIKTDINATLELCHSGNEPSAGEWQDDVETLRAGVRSIKTMAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL 594
MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASAL DKLDPKL EIKTDINA LELCHSGNEPSAGEWQDDVETLRAGVRSIKT+AVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL
Sbjct: 1 MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALVDKLDPKLEEIKTDINAALELCHSGNEPSAGEWQDDVETLRAGVRSIKTIAVSLLNNTYVAPRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 423 |
| Model size | 1110 |
| Exons | 4 |
| Ec32 ortholog | Ec-15_003660.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927661.8986282-UTR-E-siliculosus-1a_F_contig1148:32913..33426 | 1622927661.8986282-UTR-E-siliculosus-1a_F_contig1148:32913..33426 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1148 32914..33426 - |
| 1696318629.1797757-UTR-E-siliculosus-1a_F_contig1148:32913..33426 | 1696318629.1797757-UTR-E-siliculosus-1a_F_contig1148:32913..33426 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1148 32914..33426 - |
| 1622927661.9679477-UTR-E-siliculosus-1a_F_contig1148:35602..35776 | 1622927661.9679477-UTR-E-siliculosus-1a_F_contig1148:35602..35776 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1148 35603..35776 - |
| 1696318629.2381678-UTR-E-siliculosus-1a_F_contig1148:35602..35776 | 1696318629.2381678-UTR-E-siliculosus-1a_F_contig1148:35602..35776 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1148 35603..35776 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1148.965.1 >prot_E-siliculosus-1a_F_contig1148.965.1 ID=prot_E-siliculosus-1a_F_contig1148.965.1|Name=mRNA_E-siliculosus-1a_F_contig1148.965.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=141bp
MAPSEAPLNAEAIARAVTGLPSAVFVGGVSGALDAEASALADKLDPKLGE
IKTDINATLELCHSGNEPSAGEWQDDVETLRAGVRSIKTMAVSLLNNTYV
APRARERLHREPSLSSFGGSTRAGGALGQPSTDQEFVLEL* back to topmRNA from alignment at E-siliculosus-1a_F_contig1148:32914..35776- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1148.965.1 ID=mRNA_E-siliculosus-1a_F_contig1148.965.1|Name=mRNA_E-siliculosus-1a_F_contig1148.965.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2863bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:32914..35776- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCAGCCCACAGGCAGTTTCCAAGAGGCTTATGCTAACTGAACCCGTGGA
GTACTCCGTAACCCCTGCGGCCTCTTGCCACACATCGATGGGCTGCCCTT
CTCTGCGCTGAAAGAAAACACGGTTCCCTTCCAGTCAGTGTCTTTTCAGG
AACAACCAAAACCGTGATATATCAATGGCACCCTCGGAGGCTCCTCTCAA
TGCGGAGGCAATAGCCCGCGCCGTGACCGGCCTCCCTTCAGCGGTGTTCG
TCGGGGGCGTGAGCGGGGCTCTCGACGCGGAAGCGAGTGCCTTGGCGGAC
AAGCTAGACCCCAAGCTGGGGGAGATCAAGGTGCGGAACATTCAACGCTC
TGTACATCATTAGCCCGGTCTGTTGGTGGTGCTGGTGCGATGGTTTGTAA
GCGTCCACCGAAACCCCACGGATCCTTACCCACGCGCTCCCACCCCGTCT
CCTCGCGCCCTCGCCAAACCAACCATTTGGTGTTGTTGAAATTGGTATGG
CACTCTACAGCAGTAACCGCACAACCTGGAGACCACTTGTACACGATATG
TGTAAGCTGCTGTCCGGTCCCGCTCATGTTACTCCGCATGTCACATCCGT
TTCAAGGGTCGACCGATATTGCCGTTCTGCGGTTGACCCATTTCAAATGA
CGCGTCCATGGCGTCACGTGTTTGGTCGGCTTGTCAATATGCACCGACCC
GTGGGAAGAGCAAGGAGGGGAGCTTGGTGATGCACATCTTTGCTGCGATC
GAGTCTCCAACCTCTCCAACTTCAGAAAACTGCTCTGTAGCTGACATTAC
CAGGTGGCGCAATTTGGTGGCGTTGGAAACCTGGCAACTGCCAACCCAGG
CTCGGGTTGCTGGTGACACACGGATATGTCGATTCCTCTTTTCTCGGTTT
ACCGCTACCGATACAAGCCTGACTCTTACCTTTACAAACCCGCGTTATCT
ACAAATTGCTCGCACAGACCGATATCAACGCCACTTTGGAGCTGTGCCAC
TCCGGGAACGAGCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACCCT
AAGAGCGGGCGGTAAGAGAAGCACGGCGTGTATCGCTGTTGTAGCGGTTG
TTTTTGACCTCAGGCTCGACCCTGGCTCTCGCATACCGTTTGAATATCGA
ATACAGTCGAAGCGATAGAGTCCCTATGTCAGCATGATCGGGTTCTAACA
AGTACGCTGATGTAGGAGAAGTGGGGGCGGCTCTCTCGTGAAATCCTTTG
GTAGGAAGAGGCAGGGCCGTATTAAGGGCACAACAGAGTCCCTCCACGCG
TGCCACTGTAGTCTCCTGTTGTTGGAAGCCCGATGCGTTCGCTGGAAGGC
GAGCAAAGCTCGGGCTTGGCCTGTACCAGGCCCGCCACACTGCTGGGCGT
TGAGTGATTAAAAGCTCGAGTAAGCAGCGGTGCTGACCCCACATTTGCTT
GTGACCTTCAGTTTCGACACGTCCAGGAGGGTGTCAAGTCCCCATGACAT
GTGTTCCGACAGCTCCCGACAAAGTTATCCAACGTTAACATCCTGGCCCA
CTATGCCGCATATAAGGCCGTCCTTTGTTGCTCTGCCTAACACGTGGGTG
CATTTGTTGCCCTGCTTTTTGCTGAAAGTGTTGCGAAGACGCGCGTGGTA
GACTCTGATGCATGCAGGATTGCGATCCTCAGCGCGTTGTCTCAATAATC
TTGCCCGCGCATTTGTTAGATTGTTGCTTGTTTCGGAACAGCTGTAAGTA
CATTGGACCAGGGGTCATTAAAGGATTTGACGCATGATGTTTGCCGGCGT
CTCTCTTGTGGCCACATGTTCGTCGTCGTTGGTGCTTGCCGTTGCTCGCC
TTTGCGCCTTTCATGCAGTGCGGTCGATCAAGACCATGGCGGTGAGCTTG
CTGAACAACACGTACGTGGCGCCTCGGGCACGAGAGGTGAGATTCTCTAC
GTGGCTGCGCCGCAAGGCGGCCCGGTTTGAAGGCGTTGCGGTGGTCCCGC
GTAGAGCTTGCTCCTTTGCAAATTGATTGGCAGCGTCCTTCCGGCTGTAC
GTGCAGAGGCTGCTTTGGTGAGGACCACCCACCACCACTCTCCGCCTTTT
AGCCGGCCGGTCATCATCTTGCGCCTGTAATCCAGCGTTTATTTTGTAAG
TGACTCAAGAATTAAACTTCTTTCCCCTCCCTCCGTTTGTTGGGTGTTAT
CGTATTGTGTGGTCCTGTTTTGCCCGGGCTTTCCGATTCTGAAAGCGCCT
TCATCGAGAGCCCTCCCTCTCGTCCTTCGGAGGTTCAACGAGGGCCGGGG
GCGCATTGGGGCAGCCTTCCACGGACCAAGAGTTCGTCCTGGAGTTGTAA
TTTTTTCCAGTTTGCCGAGTGTCTGTTGTATAAATATATTTCCTGTGTGG
TTGGAGTCTGTCATCTGTAATTATATCCTCCAAGGCGTACAATTCGGTGT
TTTTGGTGTGGGTGGTTGAGGGGCAAGTCTACACTCGTGCTTGCAAACAG
AATGTCGATGCCTTCAACCGATTTGCTTCAGACGCAATGCGGACGAAACT
TGTCTGAGAAGTTGTGCATGTGAGCGAGGAGGAATTGGAATGGAGGTCCA
GCGAATCGAGAATCCCTTCATGTGTATCGGGGTTCCTGTTACAGCAGGGA
ATCGTCCTCGACAGGCGTCCTGGGTAGCTTGCATCTTGTTTCGGGGTGAT
TTGCATACGATCAGGAACGTGAATGAGCGTAAATTTTGGACCAGGTCTGG
AGGGGGAAAGAAGAGCCTAGCGCTCAGAAAGGAGTTGCTTCGCTTGAGCA
GCAGCCACTGCTCTACATCTGCACCAGACGGCGTTTGATTGGCGACAAGG
TTGTTAAGTGGGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1148:32914..35776- >mRNA_E-siliculosus-1a_F_contig1148.965.1 ID=mRNA_E-siliculosus-1a_F_contig1148.965.1|Name=mRNA_E-siliculosus-1a_F_contig1148.965.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:32914..35776- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACCCTCGGAGGCTCCTCTCAATGCGGAGGCAATAGCCCGCGCCGT
GACCGGCCTCCCTTCAGCGGTGTTCGTCGGGGGCGTGAGCGGGGCTCTCG
ACGCGGAAGCGAGTGCCTTGGCGGACAAGCTAGACCCCAAGCTGGGGGAG
ATCAAGATGGCACCCTCGGAGGCTCCTCTCAATGCGGAGGCAATAGCCCG
CGCCGTGACCGGCCTCCCTTCAGCGGTGTTCGTCGGGGGCGTGAGCGGGG
CTCTCGACGCGGAAGCGAGTGCCTTGGCGGACAAGCTAGACCCCAAGCTG
GGGGAGATCAAGACCGATATCAACGCCACTTTGGAGCTGTGCCACTCCGG
GAACGAGCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACCCTAAGAG
CGGGCGACCGATATCAACGCCACTTTGGAGCTGTGCCACTCCGGGAACGA
GCCGTCTGCTGGGGAGTGGCAAGACGACGTCGAGACCCTAAGAGCGGGCG
TGCGGTCGATCAAGACCATGGCGGTGAGCTTGCTGAACAACACGTACGTG
GCGCCTCGGGCACGAGAGTGCGGTCGATCAAGACCATGGCGGTGAGCTTG
CTGAACAACACGTACGTGGCGCCTCGGGCACGAGAGCGCCTTCATCGAGA
GCCCTCCCTCTCGTCCTTCGGAGGTTCAACGAGGGCCGGGGGCGCATTGG
GGCAGCCTTCCACGGACCAAGAGTTCGTCCTGGAGTTGTAACGCCTTCAT
CGAGAGCCCTCCCTCTCGTCCTTCGGAGGTTCAACGAGGGCCGGGGGCGC
ATTGGGGCAGCCTTCCACGGACCAAGAGTTCGTCCTGGAGTTGTAA back to top
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