mRNA_E-siliculosus-1a_F_contig1145.951.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1145.951.1 vs. uniprot
Match: D7FVI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI6_ECTSI) HSP 1 Score: 2309 bits (5983), Expect = 0.000e+0 Identity = 1268/1415 (89.61%), Postives = 1300/1415 (91.87%), Query Frame = 1
Query: 1243 MSQADSRVHDVLMKPERIEWEPSRTAPLDYPTPSVRRGVTRFHEQIQRTRLMEGKEPLDGLPDVREPETGVRPATVVQRRRIQGMPPPLRWPDEKHMVPGDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMKTSAEQALIGAGRHPTGGGQGRGPGAGAQSMRLSRTTSVVTKPTTEASASGGVGRVGAFEVQVTACLLSRQAPHAVSAVPRSGQVRQTSPDAIAGAGHMRSATVSSKLASGKWPHPERVARKIVQTLQQWGALVSQQQEQQRAPVPRCSSMSGTDHPSNVSGGNNRLGNGESHASATGHVAQEPDTQEPNEGEETRASSGENGALDTTRVVASTERVQDKRHGNGAELSSSEGGGMKGGAGELGASDGWSEGGIAGAGRRMLENPDAKTNSILPQAQGVSGSTSEVSASGTRGTARPHGGDTATSTVAPTLEAFDLIVEDACAEGVEFAAEGNTADPCLLLRVGKRKARKSKPVADVHGGPGGQCRWPSQTCVVTSLREENIRSSGLEVEIWDDLGWIIAKGNVSPEEIGDALGVALAAARAAPATAGSATEGSVPPXXXXLPTVTCDLKSDRGPVSTGNGRVTFGIRLLRPQNASFASRHGERATDGAVSYNAEAGDDAKERLSQTVQNMDNGKVLRRVDTTTSVQGDTTEAQQASNATNSSGKKAVRGDAGRVFDEINDLLGLTSNGSASGSGMPTSCSGAASTGSGTGGSGDFSFVLGDGLLRSEHHISVDDL-GESWSSVEEGTLATSGQSRRESGGGLVERARKLTPSPAVSMSDNGGAPVDRKGVGGGVNPPAASLTLAPNAGGTSDSSNPSDGVDADDYSDDDFDCDGASGGAEGPLDVRSLFSCSSASSFASLS----EHGLTSAVARGAPQHEREEIAVRAATRILRRRLRRAAERCGSSGSNLGTKAALLFHILDEDQNGQLAVEELEKALAPTRGKRAERTESPVLRPSRVMAALVAGMDRVGKQSANLEEFQAFVLDVPGSGGNTATDAPTSPELSRGNVDMPALWLRLRRAAVEPSRRHDCNEDEVQMPTPVSAVGTNGGGGEGGAEDEEVMPGERESWSALTWQGPVDVSSLGRGRFEECDTEGSGSVPCHTFREVLSRPGVPIEPPLSEAEMESLCRHFDSNFKSNGLPVGTDRGGESTSNPAGREEENEDPMSVGWPANADAPVSYRAFLAWVDPIDVGRVAKRLSRFLRAVGDPGSKIGGPVAEQDVGDQGTPVRALTATGPEFWGAKSGGAGNKVAAAADMPTAVEVKGVGLGGGTGATRAAASDAHGXXXXXXXXXXXXXXXXXXXXXXXXXGVEAVERRAIVKLFRAVDVDASGHISQEELLKAVNRLGLPVSVAEARLLVAEYGGVAGGGRADGSGGKGTGEGELSLDDFDCMVRWQSRAH 5472
MSQADSRVHDVLMKPE IEWEPSRTAPLDYPTPSVRRGVTRFHEQIQRTRLMEGKEPLDGLPDVREPETGVRP TVVQRR IQGMPPPLRW +EKHMV GDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMKTSAEQALIGAGRHPT GGQGRGPGAGAQSMRLS+TTSVVTKPTTEASASGGVGRVGAFEVQVTACLLSRQAPHAVSAVPRSGQVRQTSPD IAGAGH+RSATVSSKLASGKWPHPERVARKIVQTLQQWGALV QQQEQQRAPVPRCSSMSGTDHPSN SGGNNRLGNGESHASATGHVAQEPDTQEPNEGEETRASSGENGAL TRVVASTERVQDKRHGNGAELSSS+GG MKGGAGELGASDGWSEGGIAGAGRRMLENPDA TN +L QAQGV STSE SASG TARPHGGDTATSTVAPTLEAFDLIVEDACAEGVEFAAEGNTADPCLLLRVGKRK RKSKPVADV GGPGGQCRWPSQTC+VTSLREENIRSSGLEVEIWDDLGW+IAKGNV+PEEIGDALGVALAAARAAPATA S TEGSVPP LPTVTCDLKSDRGPV+T NGRVTFGIRLLRP+ ASFASR+GERATDGA SYNAEAGDD KERLSQTVQNM NG+VLRRVDTTT VQGDT EAQ ASNATNSSG KAVRGDAGRVFDEINDLLGLTSNGSASGSG+ TSCS A+ TG GTG SGDFSFVLG GLL SEHH SVDDL GESWSSVEEG LATS QSRRESGGGLV RARKLTPSPA+S+SDNGGAPVDR GVGGGVN P LTLA N GGT+DSSNPSDGVDADDYSDDDFDCDGASGG EGPLDVRSLFSCSSASS ASLS EHGLTSA ARGAPQHEREEIAVRAA RILRRRLRRAAERCG G NL KAALLF+ LDEDQNGQLAVEELEKALAPT GKRAERTESPVL PSRVMAALVAGMDRVGKQSANL+EFQA+VLD+PGSG NTATDAPTSPELSRGNVDM ALWLRLRRAA+E S RHDCNED VQ P P SA GTNG GGEGGAED+EVMPGERESWSALTW+GPVDVSSLGR RFEECDTEGSGSV CHTFREVLS PGV IEPPLSEAEMESLCRHFDSNFKSN LPVG D GE+ SNPAGREEENE+ + GWP NADAPVSYRA LAW+DPIDVGRVAKR+SRFLRAVG+PGSKIGGPVAEQ DQGT VRAL TG E GAKSGGA NKV AAADMP AVEV GVGLGGGTGATRAAASDAHGXXXXXXXXXXXXXXX XXXXXXXXGVE VERRAIVKLFRAVDVDASGHISQEELLKAVN LGLPVSVAEARLLV EYGGVAGGGRADGSGGKGTGEG+LSLDDFDCMVRWQSRA+
Sbjct: 1 MSQADSRVHDVLMKPEPIEWEPSRTAPLDYPTPSVRRGVTRFHEQIQRTRLMEGKEPLDGLPDVREPETGVRPVTVVQRRCIQGMPPPLRWSEEKHMVAGDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMKTSAEQALIGAGRHPTAGGQGRGPGAGAQSMRLSQTTSVVTKPTTEASASGGVGRVGAFEVQVTACLLSRQAPHAVSAVPRSGQVRQTSPDVIAGAGHIRSATVSSKLASGKWPHPERVARKIVQTLQQWGALVPQQQEQQRAPVPRCSSMSGTDHPSNASGGNNRLGNGESHASATGHVAQEPDTQEPNEGEETRASSGENGAL--TRVVASTERVQDKRHGNGAELSSSDGGEMKGGAGELGASDGWSEGGIAGAGRRMLENPDATTNRVLSQAQGVRNSTSEGSASGIGSTARPHGGDTATSTVAPTLEAFDLIVEDACAEGVEFAAEGNTADPCLLLRVGKRKGRKSKPVADVPGGPGGQCRWPSQTCLVTSLREENIRSSGLEVEIWDDLGWVIAKGNVTPEEIGDALGVALAAARAAPATAVSGTEGSVPPPPP-LPTVTCDLKSDRGPVNTSNGRVTFGIRLLRPETASFASRYGERATDGAASYNAEAGDDTKERLSQTVQNMKNGEVLRRVDTTTPVQGDTAEAQHASNATNSSGTKAVRGDAGRVFDEINDLLGLTSNGSASGSGISTSCSAASPTGGGTGSSGDFSFVLGGGLLGSEHHTSVDDLVGESWSSVEEGPLATSAQSRRESGGGLVGRARKLTPSPAISISDNGGAPVDRNGVGGGVNRPVPPLTLAANEGGTADSSNPSDGVDADDYSDDDFDCDGASGGTEGPLDVRSLFSCSSASSSASLSLEKEEHGLTSAEARGAPQHEREEIAVRAAARILRRRLRRAAERCG--GGNLCAKAALLFNRLDEDQNGQLAVEELEKALAPTTGKRAERTESPVLPPSRVMAALVAGMDRVGKQSANLKEFQAYVLDLPGSGENTATDAPTSPELSRGNVDMAALWLRLRRAAIESSSRHDCNEDRVQRPIPESAAGTNGCGGEGGAEDQEVMPGERESWSALTWEGPVDVSSLGRERFEECDTEGSGSVRCHTFREVLSGPGVQIEPPLSEAEMESLCRHFDSNFKSNRLPVGRDWCGEAASNPAGREEENEETRAAGWPTNADAPVSYRALLAWIDPIDVGRVAKRVSRFLRAVGNPGSKIGGPVAEQGGRDQGTIVRALAVTGSEVGGAKSGGARNKVGAAADMPKAVEVTGVGLGGGTGATRAAASDAHGXXXXXXXXXXXXXXXVSXXXXXXXXGVETVERRAIVKLFRAVDVDASGHISQEELLKAVNGLGLPVSVAEARLLVTEYGGVAGGGRADGSGGKGTGEGQLSLDDFDCMVRWQSRAY 1410
BLAST of mRNA_E-siliculosus-1a_F_contig1145.951.1 vs. uniprot
Match: A0A6H5K0F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F6_9PHAE) HSP 1 Score: 1803 bits (4669), Expect = 0.000e+0 Identity = 1018/1234 (82.50%), Postives = 1071/1234 (86.79%), Query Frame = 1
Query: 1828 VTACLLSRQAPHAVSAVPRSGQVRQTSPDAIAGAGHMRSATVSSKLASGKWPHPERVARKIVQTLQQWGALVSQQQEQQRAPVPRCSSMSGTDHPSNVSGGNNRLGNGESHASATGHVAQEPDTQEPNEGEETRASSGENGALDTTRVVASTERVQDKRHGNGAELSSSEGGGMKGGAGELGASDGWSEGGIAGAGRRMLENPDAKTNSILPQAQGVSGSTSEVSASGTRGTARPHGGDTATSTVAPTLEAFDLIVEDACAE--------------GVEFAAEGNTADPCLLLRVGKRKARKSKPVADVHGGPGGQCRWPSQTCVVTSLREENIRSSGLEVEIWDDLGWIIAKGNVSPEEIGDALGVALAAARAAPATAGSATEGSVPPXXXXLPTVTCDLKSDRGPVSTGNGRVTFGIRLLRPQNASFASRHGERATDGAVSYNAEAGDDAKERLSQTVQNMDNGKVLRRVDTTTSVQGDTTEAQQASNATNSSGKKAVRGDAGRVFDEINDLLGLTSNGSASGSGMPTSCSGAASTGSGTGGSGDFSFVLGDGLLRSEHHISVDDL-GESWSSVEEGTLATSGQSRRESGGGLVERARKLTPSPAVSMSDNGGAPVDRKGVGGGVNPPAASLTLAPNAGGTSDSSNPSDGVDADDYSDDDFDCDGASGGAEGPLDVRSLFSCSSASSFASLS----EHGLTSAVARGAPQHEREEIAVRAATRILRRRLRRAAERCGSSGSNLGTKAALLFHILDEDQNGQLAVEELEKALAPTRGKRAERTESPVLRPSRVMAALVAGMDRVGKQSANLEEFQAFVLDVPGSGGNTATDAPTSPELSRGNVDMPALWLRLRRAAVEPSRRHDCNEDEVQMPTPVSAVGTNGGGGEGGAEDEEVMPGERESWSALTWQGPVDVSSLGRGRFEECDTEGSGSVPCHTFREVLSRPGVPIEPPLSEAEMESLCRHFDSNFKSNGLPVGTDRGGESTSNPAGREEENEDPMSVGWPANADAPVSYRAFLAWVDPIDVGRVAKRLSRFLRAVGDPGSKIGGPVAEQDVGDQGTPVRALTATGPEFWGAKSGGAGNKVAAAADMPTAVEVKGVGLGGGTGATRAAASDAHGXXXXXXXXXXXXXXXXXXXXXXXXXGVEAVERRAIVKLFRAVDVDASGHISQEELLKAVNRLGLPVSVAEARLLVAEYGGVAGGGRADGSGGKGTGEGELSLDDFDCMVRWQSRAH 5472
VTACLLSRQAP AVSAVPRSGQVRQ SPD IAGA H+RSATVSSKLASGKWPHPE VAR+IVQTLQQWGAL QQQEQQRAP+ RCS M GTDHPSN+SGG NRLG GESHASATGHVAQEPDTQEP+EG++TRASSGENGAL TT+ V ERV D+RHGNGAE SSS+G GMKGGAGELG SDG SEGG+AGAGR +LE+PD ++ILPQ QGV+ STSEV SGT ARPHGG+TATSTVAPT+EAFDL VEDA AE GVEFAAEG+TADPCLLLRVGKRK RKSKPVADV GGPGGQCRWPSQTCVVT L EENIRSSGLEVEIWDDLGWIIAKGNVSP+EIG+AL VA+ AARAAPATA SATEGSV P LPTVTCDLK+DRGPV+TGNGRVTFG+RLLRP+NAS SRHGE ATDGAVSYNAE GDDAKERLSQT+QNM++GKVLRRVDTTT VQGDTTEAQ ASNATN + KKAVRGDAGRVFDEINDLLGLTSNGSA GSG+PTSCSGAASTGSGTGGSGDFSF LGDGLL +EHH SVDDL GESWSSVEEG LATSGQ RRESGGGLVER R LT SPAVS+SDNG AP+DR GVGGGVNPPAA LTLA N GT+DSSNPSDGVDADDYSDDDF DGA GGAEGPLDVRSLFSCSSASS ASLS HGLTSA ARGAPQHEREEIAV AA +ILRRRLRRAAERCG G NLG KAALLF+ LDEDQNGQL VEELEKALAPTRGKRAERTE+PVL PSRVMAALVAGMDRVGKQSANL+EFQAFVLDVPGSGGNTATDAPTSPELSRGNVDM ALWLRLRRAA+EPS RHDCN+D VQ P PVSA GTNGGGGEG AED+E MPGERESWSALTW+GPVDVSSLGR RFEE DTEGSG VPCHTFREVLS PGV IEPPLSEAEMESLCRHFDSNFKS LPVG D GE+ PAGREEENE+ VGWP +ADAPVSYRA L W+DPIDVGRVAKR+SRFLRAVG+PGSKIGGPVAEQD DQG P RAL GP+ GAK GGA KVAA+ADMP AVEV GVGLGGGT XXXXXXXXXXXXXXXXXXXXXXXXX VE VERRAIVKLFRAVDVDASGHISQEELLKAVN LGLPVS AEARLLV EY GVAGGGRADGSGGKGTGEG+LSLDDFDCMVRWQSRA+
Sbjct: 26 VTACLLSRQAPQAVSAVPRSGQVRQISPDVIAGASHIRSATVSSKLASGKWPHPEHVARRIVQTLQQWGALEPQQQEQQRAPLQRCSGMGGTDHPSNLSGGKNRLGKGESHASATGHVAQEPDTQEPSEGDDTRASSGENGALGTTKAV---ERVHDERHGNGAEHSSSDGEGMKGGAGELGVSDGRSEGGVAGAGRTLLESPDMTASNILPQGQGVNNSTSEVPVSGTGSAARPHGGETATSTVAPTMEAFDLSVEDAWAETITASWLSSLVVLKGVEFAAEGSTADPCLLLRVGKRKGRKSKPVADVPGGPGGQCRWPSQTCVVTGLGEENIRSSGLEVEIWDDLGWIIAKGNVSPDEIGNALDVAVTAARAAPATAVSATEGSVSPSTP-LPTVTCDLKTDRGPVTTGNGRVTFGVRLLRPENASVDSRHGECATDGAVSYNAEEGDDAKERLSQTLQNMEDGKVLRRVDTTTHVQGDTTEAQHASNATNLTVKKAVRGDAGRVFDEINDLLGLTSNGSAIGSGVPTSCSGAASTGSGTGGSGDFSFNLGDGLLGNEHHTSVDDLAGESWSSVEEGPLATSGQCRRESGGGLVERPRNLTASPAVSISDNGRAPLDRNGVGGGVNPPAAPLTLAANERGTADSSNPSDGVDADDYSDDDFYYDGAIGGAEGPLDVRSLFSCSSASSSASLSLEKEAHGLTSAEARGAPQHEREEIAVGAAAQILRRRLRRAAERCGGGG-NLGAKAALLFNRLDEDQNGQLGVEELEKALAPTRGKRAERTENPVLPPSRVMAALVAGMDRVGKQSANLKEFQAFVLDVPGSGGNTATDAPTSPELSRGNVDMAALWLRLRRAAIEPSSRHDCNKDGVQRPIPVSAAGTNGGGGEGRAEDQESMPGERESWSALTWEGPVDVSSLGRERFEERDTEGSGRVPCHTFREVLSGPGVQIEPPLSEAEMESLCRHFDSNFKSKRLPVGRDWNGEAVRYPAGREEENEETREVGWPVHADAPVSYRALLGWIDPIDVGRVAKRVSRFLRAVGNPGSKIGGPVAEQDCRDQGMPARALGVMGPKVGGAKPGGARIKVAASADMPKAVEVAGVGLGGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETVERRAIVKLFRAVDVDASGHISQEELLKAVNGLGLPVSEAEARLLVTEYAGVAGGGRADGSGGKGTGEGQLSLDDFDCMVRWQSRAY 1254
BLAST of mRNA_E-siliculosus-1a_F_contig1145.951.1 vs. uniprot
Match: D8LBW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW1_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 4.940e-5 Identity = 85/303 (28.05%), Postives = 115/303 (37.95%), Query Frame = 1
Query: 1279 MKPERIEWEPSRTAPLDYPTPSVRRGVTRFHEQIQRTRLMEGKEPLDGLPDVREPETGVRPATVVQRRRIQGMPPPLRWPDEKHMVPGDVLVTVEHCAACSRHRMSLHHNADAYIRRAAAMKTSAEQALIGAGRHPTGGGQGRGPGAGAQSMRLSRTTSVVTKPTTEASASGGVG----------------RVGAFEVQVTACLLSRQAPHAVSAVPRSGQVRQTSPDAIAGAGHMRSATV-SSKLASGKWPH-------PERVARKIVQTLQQWGALVSQQQEQQRAPVPRCSSMSGTDHPS 2115
++P R P+R +PTPSV V R+ E ++ +E DGL A+ V P + WP+ M GDV+VTVEHC C RHRM+ H+ + Y+ A A+K + LI + R P A ++ S S P GG G RVGA EVQV A +R GH+ A V SKLASG+WP P R+ R L+ WG ++ R + +G D PS
Sbjct: 74 LEPPRPPKRPTRPC---WPTPSVEASVLRYIETVR-------EEKGDGL------------ASAV---------PTVSWPEHAEMEKGDVVVTVEHCHGCHRHRMTTRHDPEVYLSHANAVK----ELLIESLREL--------PVRLAVVLKKSPLRSRTLSP-------GGDGXXXXXXXXXXXTLRRRRVGALEVQVAARHPNR--------------------------GHLLHAQVIHSKLASGRWPRLGTSVCLPNRLRR----ALESWGFETDMREIDGRRKHENSTDGAGADTPS 296 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1145.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1145.951.1 >prot_E-siliculosus-1a_F_contig1145.951.1 ID=prot_E-siliculosus-1a_F_contig1145.951.1|Name=mRNA_E-siliculosus-1a_F_contig1145.951.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1825bp MMLIERDPSASFAEASRYVFAASRKRRHLVEDTAAAAPRIPECYNKSRKRback to top mRNA from alignment at E-siliculosus-1a_F_contig1145:8879..18879+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1145.951.1 ID=mRNA_E-siliculosus-1a_F_contig1145.951.1|Name=mRNA_E-siliculosus-1a_F_contig1145.951.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=10001bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1145:8879..18879+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1145:8879..18879+ >mRNA_E-siliculosus-1a_F_contig1145.951.1 ID=mRNA_E-siliculosus-1a_F_contig1145.951.1|Name=mRNA_E-siliculosus-1a_F_contig1145.951.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=10950bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1145:8879..18879+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |