mRNA_E-siliculosus-1a_F_contig1143.943.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1143.943.1
Unique NamemRNA_E-siliculosus-1a_F_contig1143.943.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: D7G6T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T5_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 2.910e-131
Identity = 233/318 (73.27%), Postives = 257/318 (80.82%), Query Frame = 1 
Query:   16 MQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMFLVDRRVRVSPHMPPDETGDIDIMEPSSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGAADSASVTSRRGQNQQGDETVSKIESVLNRERGQEQQSLHA--RKATEDIDSVETRTAXXXXXXXXXXAGEMTGSQGVYLV 963
            MQELYL+VFL RYLDLF+ FIS YNSVMK+ +IILTALT GM KYRPSLKASYDASL                             P+    ++ F W FS+VLEPLA+VPQLLVFRGSTDAGRL WTYVTLMGAYRA YILNWV+RS+ E Y Y HHPLVYAAG++QTGMYLMFLVDR VRVSPH+PPDETGD+DIMEP+SSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSG AD+AS TSRRG++Q+GDETVSKIESVL+RERGQ + S+HA  + A ED  SVETRTAXXXXXXXXX  GEMTGSQGVYLV
Sbjct:    1 MQELYLVVFLTRYLDLFFRFISVYNSVMKVVFIILTALTIGMFKYRPSLKASYDASL-----------------------------PYSQTSLVNFLWTFSEVLEPLALVPQLLVFRGSTDAGRLAWTYVTLMGAYRAFYILNWVYRSHYE-YGYIHHPLVYAAGIIQTGMYLMFLVDRGVRVSPHLPPDETGDVDIMEPTSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGVADAASATSRRGEHQRGDETVSKIESVLSRERGQGR-SVHASGKNAAEDTSSVETRTAXXXXXXXXX-GGEMTGSQGVYLV 286
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: D7FRR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR1_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 3.780e-76
Identity = 135/187 (72.19%), Postives = 146/187 (78.07%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMFLVDRRVR 561
            GVSLKMQELY++VFL RY DL YVF SWYNSVMKIA+I LT LT GMLK RPSLKASYDASL                              ++LPGV++FAWNFS+VLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWV+ SYN DY Y+HHPLVYAAG+VQTGMYLMFLVDRRVR
Sbjct:   32 GVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASLH-----------------------------YYLPGVLRFAWNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYN-DYAYRHHPLVYAAGIVQTGMYLMFLVDRRVR 188
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: A0A6H5KTW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 8.430e-50
Identity = 112/119 (94.12%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:  607 MEPSSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGAADSASVTSRRGQNQQGDETVSKIESVLNRERGQEQQSLHARKATEDIDSVETRTAXXXXXXXXXXAGEMTGSQGVYLV 963
            MEPSSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGAA+SASVTSRRGQNQQGDETV KIESVLNRERGQEQQ LHARKATEDI S ETRTAXXXXXXXXX  GEMTGSQGVYLV
Sbjct:    1 MEPSSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGAANSASVTSRRGQNQQGDETVRKIESVLNRERGQEQQPLHARKATEDIGSDETRTAXXXXXXXXX--GEMTGSQGVYLV 117
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 6.980e-43
Identity = 87/180 (48.33%), Postives = 118/180 (65.56%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+SLK QEL+L+VF+ RY+DLF+ FISWYNS+MK+ YI LT+L   M++    +KA+YD S D F  W   + P   L +++  W        F   +I F W FS+VLEP A+VPQL+V +   +   L   YV L+GAYR+LYI+NWV+R++ E   YQHH LVY AG+VQT +Y  F
Sbjct:   31 GISLKTQELFLVVFVTRYVDLFFRFISWYNSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLIHSWSWWTVSMPF-SSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEA-GYQHHVLVYIAGLVQTLLYADF 208
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.050e-36
Identity = 82/180 (45.56%), Postives = 113/180 (62.78%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+SLK QEL+L VF+ RYLDLF  F S YNSVMK+ YI LTAL   M++ +  ++ +YDAS D F    + + P   LA +  + Q    +  F        WNFS  LE +A+VPQL+V +   +   L   Y+  +GAYRALYILNW++RS++E   Y+HH +VY AG+VQT +Y+ F
Sbjct:   31 GISLKTQELFLAVFVCRYLDLFTTFYSVYNSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLVQGFDVRDLF--------WNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHER-GYKHHYVVYFAGIVQTALYVDF 201
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: B7G303_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G303_PHATC)

HSP 1 Score: 144 bits (363), Expect = 1.770e-35
Identity = 75/180 (41.67%), Postives = 114/180 (63.33%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+SL+  EL+L+VF+ RYLDLF+ F S YNSVMK+ YI+ TA     ++++  +K++Y+ S D F  W   + P F +A+I  +    +G   F   +++  W FS  LE +A++PQL+V +   +   L   Y+  MGAYRALYI+NW++R++ E   Y+HH +VY  GVVQT +Y  F
Sbjct:   33 GISLRTNELFLLVFVTRYLDLFFNFFSIYNSVMKVLYIVSTASIVYTIRFKEPIKSTYEKSQDTFLHWKFAVAPCFAIALITHL----IGSKRF--DMVELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIVNWIYRAHTEK-GYKHHWVVYFCGVVQTLLYADF 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: A0A6V1VUP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VUP9_HETAK)

HSP 1 Score: 144 bits (362), Expect = 1.990e-35
Identity = 78/180 (43.33%), Postives = 112/180 (62.22%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+SLK QEL+L+VF+ RYLDLF  FIS YNS MKI Y+  T+    +++ +P+ +A+YDAS D F  W   + PS VL +I+ +     G   F+    ++ W FS VLE  A++PQL+V +   +   L   Y+  +G YRALY+ NWV+R+Y+E   YQH  + Y  GV QT +Y+ F
Sbjct:   31 GISLKTQELFLVVFMARYLDLFTHFISLYNSFMKIMYLTSTSAIIYLMRMKPTYRATYDASQDSFLHWQFAVAPSVVLGLIISL--ISAGGFSFM----EWMWTFSIVLEATAIIPQLIVLQRYREVENLTGNYIFALGLYRALYLCNWVYRAYHEP-NYQHSYVAYLCGVAQTALYIDF 203
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: A0A7S2XZQ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.720e-35
Identity = 83/180 (46.11%), Postives = 111/180 (61.67%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+SLK QEL+L+VFL RYLDLF  FIS YNSVMK+ YI  T+    M++  P+ KA+YD   D F      +VP  VLA+I  + Q             +  W FS  LE  A++PQL+V +   +   L   YV L+G YRALYI+NWV+R+Y+E + Y+H  + YAAGVVQT +Y+ F
Sbjct:   33 GISLKTQELFLIVFLCRYLDLFTTFISLYNSVMKVLYISSTSYIIYMMRMLPTYKATYDKDQDSFLHIYFAVVPCLVLALITNLVQGF--------DFTEMLWIFSIYLEATAIIPQLVVLQRYREVENLTGNYVFLLGCYRALYIMNWVYRAYHEAH-YRHSYVAYAAGVVQTALYVDF 203
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: A0A1Z5KJM8_FISSO (ER lumen protein retaining receptor n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJM8_FISSO)

HSP 1 Score: 141 bits (356), Expect = 1.620e-34
Identity = 77/180 (42.78%), Postives = 110/180 (61.11%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+S++  EL+L+VFL RYLDLF  F S YNS+MKI YI+ TA     +K++  +K++YD S D F  W   + P  VLA +  +    +    F    I+  W FS  LE +A++PQL+V +   +   L   Y+  MGAYR LYILNW++R+ N +  YQHH +VY  GV+QT +Y+ F
Sbjct:   33 GISVRTHELFLIVFLTRYLDLFTTFYSLYNSIMKILYIVSTASIIYTIKFQEPIKSTYDKSQDSFLYWQFAVAPCAVLASVTHLIGSGISGFSF----IELLWTFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRFLYILNWIYRA-NFEAHYQHHWVVYICGVLQTLLYVDF 207
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BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Match: A0A7S2R233_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R233_9STRA)

HSP 1 Score: 140 bits (353), Expect = 4.130e-34
Identity = 74/180 (41.11%), Postives = 113/180 (62.78%), Query Frame = 1 
Query:    1 GVSLKMQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLKASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNFSQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYNEDYTYQHHPLVYAAGVVQTGMYLMF 540
            G+S++  EL+L+VF+ RYLDLF  + S YNS MK+ YI+ TA    M++++  + ++YD + D F  W   ++P   +A+I       LG  HF   +++  W FS  LE +A++PQL+V +   +   L   Y+  MGAYRALYI NWV+R+Y+E + YQHH +VY  G++QT +Y  F
Sbjct:   33 GISVRTHELFLVVFVTRYLDLFTTYYSVYNSCMKVLYILTTAAIIYMIRFQEPICSTYDKAQDTFLHWRFAVLPCICVALITH----SLGT-HFRFNIMEVLWTFSIYLEAIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIANWVYRAYHEPF-YQHHYVVYFCGILQTLLYADF 206
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1143.943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6T5_ECTSI2.910e-13173.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRR1_ECTSI3.780e-7672.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTW6_9PHAE8.430e-5094.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJM2_ECTSI6.980e-4348.33PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2... [more]
A0A835Z6E1_9STRA4.050e-3645.56ER lumen protein retaining receptor-domain-contain... [more]
B7G303_PHATC1.770e-3541.67Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6V1VUP9_HETAK1.990e-3543.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZQ8_9STRA2.720e-3546.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5KJM8_FISSO1.620e-3442.78ER lumen protein retaining receptor n=2 Tax=Fistul... [more]
A0A7S2R233_9STRA4.130e-3441.11Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1143contigE-siliculosus-1a_F_contig1143:375..6760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size951
Model size2313
Exons6
Ec32 orthologEc-01_012320.1
Ec32 ortholog descriptionER lumen protein retaining receptor
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EC2.4.1.207
EggNOG OGsCOG5196@1,KOG3106@2759
EggNOG free text desc.ER retention sequence binding
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010204,GO:0012505,GO:0016020,GO:0023052,GO:0031347,GO:0031349,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0098827
KEGG Pathwayko05110,map05110
KEGG koko:K08235,ko:K10949
Preferred nameERD2A
Seed eggNOG ortholog2880.D7G6T5
Seed ortholog evalue1.8e-109
Seed ortholog score402.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1143.943.1prot_E-siliculosus-1a_F_contig1143.943.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1143 390..5413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.5860496-UTR-E-siliculosus-1a_F_contig1143:374..3891622927657.5860496-UTR-E-siliculosus-1a_F_contig1143:374..389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1143 375..389 +
1696318626.9349942-UTR-E-siliculosus-1a_F_contig1143:374..3891696318626.9349942-UTR-E-siliculosus-1a_F_contig1143:374..389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1143 375..389 +
1622927657.7739346-UTR-E-siliculosus-1a_F_contig1143:5413..67601622927657.7739346-UTR-E-siliculosus-1a_F_contig1143:5413..6760Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1143 5414..6760 +
1696318627.01347-UTR-E-siliculosus-1a_F_contig1143:5413..67601696318627.01347-UTR-E-siliculosus-1a_F_contig1143:5413..6760Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1143 5414..6760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.5977652-CDS-E-siliculosus-1a_F_contig1143:389..4661622927657.5977652-CDS-E-siliculosus-1a_F_contig1143:389..466Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 390..466 +
1696318626.9455812-CDS-E-siliculosus-1a_F_contig1143:389..4661696318626.9455812-CDS-E-siliculosus-1a_F_contig1143:389..466Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 390..466 +
1622927657.6135912-CDS-E-siliculosus-1a_F_contig1143:2629..27231622927657.6135912-CDS-E-siliculosus-1a_F_contig1143:2629..2723Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 2630..2723 +
1696318626.9633682-CDS-E-siliculosus-1a_F_contig1143:2629..27231696318626.9633682-CDS-E-siliculosus-1a_F_contig1143:2629..2723Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 2630..2723 +
1622927657.6253917-CDS-E-siliculosus-1a_F_contig1143:3231..33181622927657.6253917-CDS-E-siliculosus-1a_F_contig1143:3231..3318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 3232..3318 +
1696318626.9750876-CDS-E-siliculosus-1a_F_contig1143:3231..33181696318626.9750876-CDS-E-siliculosus-1a_F_contig1143:3231..3318Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 3232..3318 +
1622927657.7371593-CDS-E-siliculosus-1a_F_contig1143:3906..40271622927657.7371593-CDS-E-siliculosus-1a_F_contig1143:3906..4027Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 3907..4027 +
1696318626.9830227-CDS-E-siliculosus-1a_F_contig1143:3906..40271696318626.9830227-CDS-E-siliculosus-1a_F_contig1143:3906..4027Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 3907..4027 +
1622927657.7491944-CDS-E-siliculosus-1a_F_contig1143:4663..48291622927657.7491944-CDS-E-siliculosus-1a_F_contig1143:4663..4829Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 4664..4829 +
1696318626.991436-CDS-E-siliculosus-1a_F_contig1143:4663..48291696318626.991436-CDS-E-siliculosus-1a_F_contig1143:4663..4829Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 4664..4829 +
1622927657.762836-CDS-E-siliculosus-1a_F_contig1143:5007..54131622927657.762836-CDS-E-siliculosus-1a_F_contig1143:5007..5413Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 5008..5413 +
1696318627.0035217-CDS-E-siliculosus-1a_F_contig1143:5007..54131696318627.0035217-CDS-E-siliculosus-1a_F_contig1143:5007..5413Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1143 5008..5413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1143.943.1

>prot_E-siliculosus-1a_F_contig1143.943.1 ID=prot_E-siliculosus-1a_F_contig1143.943.1|Name=mRNA_E-siliculosus-1a_F_contig1143.943.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=317bp
MQELYLMVFLMRYLDLFYVFISWYNSVMKIAYIILTALTSGMLKYRPSLK
ASYDASLDRFRLWMHGIVPSFVLAVIVQMWQDRLGKPHFLPGVIQFAWNF
SQVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVHRSYN
EDYTYQHHPLVYAAGVVQTGMYLMFLVDRRVRVSPHMPPDETGDIDIMEP
SSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGAADSASVTSRRGQ
NQQGDETVSKIESVLNRERGQEQQSLHARKATEDIDSVETRTAAAAAAAA
AAAAGEMTGSQGVYLV*
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mRNA from alignment at E-siliculosus-1a_F_contig1143:375..6760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1143.943.1 ID=mRNA_E-siliculosus-1a_F_contig1143.943.1|Name=mRNA_E-siliculosus-1a_F_contig1143.943.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6386bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1143:375..6760+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTGTGTCACTCAAGATGCAAGAGCTCTACCTGATGGTCTTCTTGATGCG
GTACTTGGACTTGTTTTATGTTTTTATTTCTTGGTACAACAGGTGAGAGA
AGTTTCAGCAGGGTCAAAAAGCCAATGCGACCGTTAGTGAGTAACGCCTG
GCTATGCTGCGGCAGTCAAACCACAAGGTACAGACGTAACTCATTTCCAA
CCCCACTCCCCTGATCCTTCTGCTGGGCGTGGGAATCTAGAAGATGTTAC
GGCCGAGGTTTCCTGTGATAGACTAATCGATCTGTCCGCTTAGGTATCCT
CTCCAGACAGGACACGTGGCCAAAAGGGCTCGATTAAGTCGGTCGGGTGG
GGGTGGGTAGATCATATGCTACATATGTTGGGTGTGGGGGGGGGACGTAC
CCTTGTGTTTTCATGCCTTAGTATGAGACCATCGACCACTATTGTTCCCA
CAGAACCGATCACCGATGACCAGTCGTTCCTTGTTACTTTGCCAAAGGTG
GCTCAAAATGTTTTCCCTACCCTATCTATCGTAAGACTAAGTTCAGATAT
GAAGTATTTCTTTCCTCAGACTCTCAGAAATTTTCTTTGGGCTGTAAGAA
AACTTTGCACTGATTCTCTCCAGCTGTCGGGCCAGCTGTCAGGCCAGTCG
TGGTCGGTCGTGTCGAACAACCCGGCAGAAGACGGCAGCTTCAACAAAAA
CGTACACGGTGAACAGCTGTTTCTGATCTGATGTTGCATCGTGTTTTAGC
ATTTTCAAACAGCTGAGCGTTGGTGCGACAGACGTCAGGAGCGGCTGTGG
AGTGAGTGTGTACGTGTGGGTGGGGCGCGAGAGGGGAAAAGGGCACATAC
ATCAGTAGCGTTTCCAGCGTGCATGCAGAAAGGCGATGACCGAGATGAGC
GTGGGCGAAACGAACCAGTTGTGTGCTGGTTGTTCCTGCAGCTAAATTCC
TAGAGAGGATCTTTGTATCAAAGGAAAAGCTCGCCGAGCCCCCCAAGAAT
GGCGCCAAAATCCCCTTTCGGAAGTACTCGTTCGATACATATTGCGCATA
CAACATCTGTTTTTCCTCTGCCTGCTCTTTGCATGTTCTTGCATCACCCC
TTTGCCGCGGTGCTCTCTTTACCCCACGCTGGAGGTACCTTGTACCTACG
AAGTATTTACCTTCCCGCGTTTGCAGCCCGCTTCGTTTCCCTCAGTAAAG
CTACCGTCCACCTGGCTTTCCGTGCCTCTGTCTGTAACTTCCTTCTATTT
TCCTAGCTCAGCCATGTATGTTTCTCTCTGAGGTTCGCAAAATTGACATT
CTGCAACTGTGTATATGGCGGGGGGTGTAGTAAAAAATGAGAACCTCGGC
GGCCATCTACACCAAAGATTCGACCTTTGAAGTTCGGCGGTACTGATGTA
ACCTTCAGGGCAATTGATTGTGAACGTGAGACTAGTGAGACGCCCCTTTA
TGCGGCTTCCGGACTACTTTTTTTTGCGTGCTTTTAGTGCTTGCGAAGCA
CAGAGAATTCCACGTGCAGCACCCCCATATGGACATCACGGTACTGTCGA
GGAAACGTCGACCACCGGACCTATTAAGACAGTTTCATCGACCTTGGAGC
GCGCCCGTAGCTATTTATGTTCGTCATGCACTTGTTGTAGTATTAGTCCA
GCCGGGGTCCCTTGGATTTGGCCTGGATGTGCCATCCAAACACACCGACA
GTGGAGAGATCACAGACACTGCGCGAGAGATTCAACACAGGATGCGGCGC
TGTATTGGACATCCGCAGCGAGATAATTCCAATGCCTGACCTGCCCGCCA
GCACGTCAACCGCATCCCTGGATCCCAGTACTTTGCCAACCAACCCACAA
GCCGACCAATCAATCAACAAGCCAACCAACCATCGAACAGCCGACACAAA
TAAAACGGCGAGGCAACATACCAATGGACGATCAGATTGACCGACGAACG
AACAAAAGGACCTCAAGAACGAACCGATTGAACCAACAAACCGACCGACC
GAAGAACCGATCAAACAACGACAAATGTTAATCAATGGACTAACCATCCA
ACGAATCACCGATCATTGTTTTTTCCGCAAAATATTCCGACCGGTCAGTG
AGTCGACCAATCAACACACGACGACGCCCAATCACCGAACCGAGCTACCA
AGGAACGACCACGCCAAAGCGATCAATCAACAATGCCACCACCCTTCCCC
CGCCTCCCGTCCCTGTGCACTCGCGCATGGAAAATACCTTGGTTCCGTCC
AAAAGCGTGATGAAGATCGCGTACATCATTCTGACGGCACTCACCAGTGG
TATGCTCAAGTACCGACCGTCCCTCAAGGCTTCATACGACGCCTCCTTGG
TGAGTAGGAAGAAAATCCCGACCAACACACTGCCTCCGTATCTTCATGTA
TCACGTTTCCGTGGGAACTTCGTTCATTTGCCGTATCTGCATTGCCAGCC
ACGGACATGAGAAGGTACTGAGTGGGTACCGGAACGGTCTTTGATGTAAC
CCCCCCCCCCCGACCGTATCCATTGGTCTACGCGATTTTCAGGACCGACG
TAAAAGACGACATCCGGACGTTCGCCCCCCCAGTGAGGTTCGGCATGTGT
ATTGTGTCCCGCAAAGAATGTCGCCCAAGAACAGAACGCTCTGCGGAAAA
TGAACATCCTGTAAGTCAGGTCTAGGGTTTATAGCCAATAGTTGCAATGC
GACTCCGGCAATGTTCAAAATCCCATCCCTCGTCTCTCATGTATCTACCA
CCTACTCTCCCGCTCGCTCTCCGTCTGACCGCGCGTTGCTCTCGATATCT
GTCTCTGTCCCTGTCGCCTTCTGCTTCTATCTCCCCGCCTCTGATTTTCG
TGGCAAGGACCGCTTTCGTCTGTGGATGCACGGGATTGTCCCGAGCTTTG
TTCTGGCTGTGATTGTTCAAATGTGGCAAGACCGCCTTGGCAAGGTTTGT
TATGTCTGGTCCTAATGCGTCTTTTCTCTAAGCACGTCGGATTTATTTTG
TTGATTGCCTGCTGTATCAACGTCTAGAATGGGAGGTTGGCTGTTGAGAC
GACCAACAAACAAGGTATTGCCAGCAACAACACAACGCTGGGAACGTATA
CTGCGCATCGAGTCGCAGGGGATACTGTTGTTTCTAAGTATGACCACTGG
TGGTGGGTTGAAACAGACGGACAAGGCAGAAGCCGCACGACTTTGGAAGC
AGCGCGGTATGGTGCAGAGGCATGAAGGCAAGCGACACCAAGCGGCACTA
GCCTGCAAACTCGGGTAACATTCTTAACAACGCCAAGCCCAACCATGACT
ACATTTCACAAATCGTTTTACACACAAACTTCCTTTCACGCAACATACTG
TGGGTCTAACGTGCTGAATGACGAGTTGCCGACACGTGTTCTACCCACGA
GTTCGCGGAGAAACCTTTGAACGTGCTCGGTTTTTACCACGCTCTCAGCC
GGTTGTGCCCGTACATTCTGCTGGACTTGCCGGCACGTTTGGCTGACCAT
CGAAGCACCCGTTCTGCATGCTACGAGAACAGCCACACTTCCTTCCTGGC
GTGATCCAATTCGCTTGGAACTTCTCGCAAGTGCTGGAGCCGCTGGCGGT
CGTGCCACAGTTGCTTGTGTTCCGGGGCAGCACGGACGCCGGGCGACTGG
GATGTGAGTGACGACAGAGTAACGTCTATCTTTCGAGGCGGGAAAGGCGG
AGGGTGTATGTGTTTCGTGGCGCAGGAAGCTGAGGACTCAAGCAGGTCCT
TTCTTGTGCGGTCAACCTGCTTCGCGGACGCTGGGTACAGCAGTGGAAAA
CGACGTCACAGTGCTTGAGTTGGCCCAGGAGGCAGCGTGATTTGAAAGCT
GGCACACCAGGCGCGTTGTGGTTGTTTCGAGTGCAGAAGCGCACGCTCCA
AAGGGTCTGCATCGCAGGCAACCTACTCGCTACTCTCCATCTGCCCCCAG
CTCAGAAACCCAGCTCAGAAGCCCCGTTCCGTCCGACTCTTCGCATATCT
GCAGAAGGTCGCGGAGGCTTTGGGGACGATGTTCATATCCGGAATAGGTT
GCCAAGAAACTGCCGAAGTTCTTCATGTGATTCTCACTTGGCTTTCCATG
GATGAGAAAGAGCATTCTGCGTTCGCGCGCCATTTTTTGGGGGGTTTCCG
TTTCGCAAAGCCCGCCTGATCTGCTTCGCACGGCCCCGCTATTACACCAA
GCACCTGTGGCACCCCCACCCCTTGCCGCCTGACCAACTTGCCGCACCCC
GCACCCTCTTTCGCCGGGTCTCTTTCGCTAACCATCCAGGGACGTATGTG
ACCCTGATGGGCGCCTACCGAGCGCTCTATATCCTCAACTGGGTGCACAG
ATCCTACAACGAAGATTACACATACCAACACCATCCGCTTGTGTATGCGG
CGGGGGTAGTGCAGACGGGGATGTACCTCATGTTCCTCGTGGATCGGAGA
GTCAGGTGTGCGTGAGTCCCTTCGTGGCGTGTTCTTTGTTTTTTTATTAC
CGTCTGTTAGGTCATTGACTAGTGGGTTGGGGGGGGTAGTTTCCGCATAC
GTCACCCCCACCACTGCAACTTCCTTCAACCGGACGGCTCAACCTCTCAC
GTCTATCCTCAACCCGCTTGTCTTCACACGCAGAGTCTCTCCTCACATGC
CCCCCGATGAGACCGGTGATATCGACATCATGGAACCATCCTCTTCTGCC
CGGGAGCGGCTACTGCCCGACCAGGACACGGACACAGAGCCAAGCCGAAA
CCGTGAGCGCGGTTTGGACGGCGAAGTGCATGGGAGGAAGCTATCGGGTG
CAGCAGATTCCGCAAGCGTGACGTCACGGCGCGGTCAAAATCAGCAAGGC
GACGAAACCGTGAGCAAGATCGAGAGTGTCCTGAATCGGGAGCGTGGGCA
GGAACAGCAGTCATTGCATGCTAGGAAGGCGACCGAAGACATTGACAGCG
TTGAAACACGCACGGCCGCCGCCGCCGCCGCCGCCGCCGCTGCTGCTGCT
GGTGAGATGACAGGGAGCCAAGGGGTGTACCTCGTCTAGACTAAGGGCTA
CACGTACGAAGACGTCTCCGACATACAGCCTACCGCCCACGGAAGGCGGC
ACGATCTGTCGATGGTGTGGCGCAGTATACGTGGCACCCGCGATGAGTGC
GCGGGTATTGCGAGGAGGGAGTTGAAGCGGGACGTGCCTTCGTTGACGAA
AGAGTTTATTCTTGTTCGGTACAACGTGGACCTGAGTGTTTTTGTGTGTA
TTGCAATATTCGTAGTGGTTGGTGGAATCGTGAGGAGAGTTATATTTCAA
GGGAGCAGTGGCGCCCAGGCCACTAGGTTTGAGTTTGGTTCGTTCGGTAT
GTGGAGTCGAGTTTTCGGGTGTAATTTTCAATATCCAAAGTGGTTGTCGG
AAGCGAAAGGAGAACGATATTTCACGGAGCATGAACCAGTGGTACAGAAG
CCGCTTCTTCGTTTCGCTAGAATTTGATATTTTCAGTATAGAGTCAAGTT
TTCGGCTGAAAGCTGGTACAATATTATTCGTAGTGATTTGGTGGCAGCGT
GAGCACAATGACATTTCAAGGAGCATGAACTAGTGGCACAGAGGCCACTA
CGTCGTTTCCCTAGAGCTAGTCAAGTTTTCGTATGAAAGTTACAAAATTG
GCAGTGGTTGTCGGAGGCGTAAAGAAGGAGAAGGATATTTCAAGGAGCTT
AATCAGTGGCACAGAGACCACCTGGTCGTTTCGCTAGAGTTTGCTTCGTT
CGGTACGTGGAGTAAAGGTTTTGGCAAAATACGCTAATGTTTATCGTGGC
AGTTATCGGAGGCGTACGGAAAACCATCTTCCAAGGAGCATGGACCAGTA
GCACAGAGGACACCTGGTCGTTTCGCTAGAGGTTGTTTCGTTCGGTGTAT
GGAGAAAAGGTTTAGGCTGAAAACTACAGTATTCGTGGTGGTTGCCGGCG
GCGTGAGGAGAATGATTTTTCAAGGAGCACGAACCAGTGGCGCAGATGCC
ACCATGTGTTGTCAATGAGTACTTCGATGGTTTACACCGATGAAGGCGTT
GATTGCGTTGATTGTTTCTAGAGACCGGCGGCCTAGTGGTCAACCTCGGA
AACCTATTGCCACGTCGTAGCAGGTTGAAATTCGATTCTCTCCGGAGCGA
GGAAACATTTGACATTTGGGGTGGTACACGTATCGGTTTACATGCTGTGA
TTTGACGGTCACGAGGGAAGGTGACGGCTGACCCCCTCTCGCGACCAAGG
CGTGAGGAAAGCACGGCAAGAGGACAGACGGGGCATTAGATATACAATTA
TAGCAAACAAGCTCCTGCTCTGTTCCTGGTCTCATACGTGCAAAGTATAC
ACCGAACGGTGTGTGAGACTGGCTCCAGAACAAAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1143:375..6760+

>mRNA_E-siliculosus-1a_F_contig1143.943.1 ID=mRNA_E-siliculosus-1a_F_contig1143.943.1|Name=mRNA_E-siliculosus-1a_F_contig1143.943.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1902bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1143:375..6760+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAAGAGCTCTACCTGATGGTCTTCTTGATGCGGTACTTGGACTTGTT
TTATGTTTTTATTTCTTGGTACAACAGATGCAAGAGCTCTACCTGATGGT
CTTCTTGATGCGGTACTTGGACTTGTTTTATGTTTTTATTTCTTGGTACA
ACAGCGTGATGAAGATCGCGTACATCATTCTGACGGCACTCACCAGTGGT
ATGCTCAAGTACCGACCGTCCCTCAAGGCTTCATACGACGCCTCCTTGCG
TGATGAAGATCGCGTACATCATTCTGACGGCACTCACCAGTGGTATGCTC
AAGTACCGACCGTCCCTCAAGGCTTCATACGACGCCTCCTTGGACCGCTT
TCGTCTGTGGATGCACGGGATTGTCCCGAGCTTTGTTCTGGCTGTGATTG
TTCAAATGTGGCAAGACCGCCTTGGCAAGGACCGCTTTCGTCTGTGGATG
CACGGGATTGTCCCGAGCTTTGTTCTGGCTGTGATTGTTCAAATGTGGCA
AGACCGCCTTGGCAAGCCACACTTCCTTCCTGGCGTGATCCAATTCGCTT
GGAACTTCTCGCAAGTGCTGGAGCCGCTGGCGGTCGTGCCACAGTTGCTT
GTGTTCCGGGGCAGCACGGACGCCGGGCGACTGGGATCCACACTTCCTTC
CTGGCGTGATCCAATTCGCTTGGAACTTCTCGCAAGTGCTGGAGCCGCTG
GCGGTCGTGCCACAGTTGCTTGTGTTCCGGGGCAGCACGGACGCCGGGCG
ACTGGGATGGACGTATGTGACCCTGATGGGCGCCTACCGAGCGCTCTATA
TCCTCAACTGGGTGCACAGATCCTACAACGAAGATTACACATACCAACAC
CATCCGCTTGTGTATGCGGCGGGGGTAGTGCAGACGGGGATGTACCTCAT
GTTCCTCGTGGATCGGAGAGTCAGGGACGTATGTGACCCTGATGGGCGCC
TACCGAGCGCTCTATATCCTCAACTGGGTGCACAGATCCTACAACGAAGA
TTACACATACCAACACCATCCGCTTGTGTATGCGGCGGGGGTAGTGCAGA
CGGGGATGTACCTCATGTTCCTCGTGGATCGGAGAGTCAGAGTCTCTCCT
CACATGCCCCCCGATGAGACCGGTGATATCGACATCATGGAACCATCCTC
TTCTGCCCGGGAGCGGCTACTGCCCGACCAGGACACGGACACAGAGCCAA
GCCGAAACCGTGAGCGCGGTTTGGACGGCGAAGTGCATGGGAGGAAGCTA
TCGGGTGCAGCAGATTCCGCAAGCGTGACGTCACGGCGCGGTCAAAATCA
GCAAGGCGACGAAACCGTGAGCAAGATCGAGAGTGTCCTGAATCGGGAGC
GTGGGCAGGAACAGCAGTCATTGCATGCTAGGAAGGCGACCGAAGACATT
GACAGCGTTGAAACACGCACGGCCGCCGCCGCCGCCGCCGCCGCCGCTGC
TGCTGCTGGTGAGATGACAGGGAGCCAAGGGGTGTACCTCGTCTAGAGTC
TCTCCTCACATGCCCCCCGATGAGACCGGTGATATCGACATCATGGAACC
ATCCTCTTCTGCCCGGGAGCGGCTACTGCCCGACCAGGACACGGACACAG
AGCCAAGCCGAAACCGTGAGCGCGGTTTGGACGGCGAAGTGCATGGGAGG
AAGCTATCGGGTGCAGCAGATTCCGCAAGCGTGACGTCACGGCGCGGTCA
AAATCAGCAAGGCGACGAAACCGTGAGCAAGATCGAGAGTGTCCTGAATC
GGGAGCGTGGGCAGGAACAGCAGTCATTGCATGCTAGGAAGGCGACCGAA
GACATTGACAGCGTTGAAACACGCACGGCCGCCGCCGCCGCCGCCGCCGC
CGCTGCTGCTGCTGGTGAGATGACAGGGAGCCAAGGGGTGTACCTCGTCT
AG
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