mRNA_E-siliculosus-1a_F_contig11428.942.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11428.942.1
Unique NamemRNA_E-siliculosus-1a_F_contig11428.942.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11428.942.1 vs. uniprot
Match: A0A6H5JLD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.560e-18
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:  217 EEEEQSCSRHVGGFQESPGDVIVESPAKATTITELPKKVAAGGAAAVEGSCTRATP 384
            EEEEQ+C+R VGGFQ SPGDVIVESPAK  TITEL +K AAGG AAVEGSCT+  P
Sbjct:   42 EEEEQACNRQVGGFQGSPGDVIVESPAKTRTITELLEKAAAGGEAAVEGSCTKVAP 97
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BLAST of mRNA_E-siliculosus-1a_F_contig11428.942.1 vs. uniprot
Match: A0A6H5KEK3_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.340e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:  363 ELYKGYTVDARNGHVVDLVRTKRNVPAQLKERTKGWDVVGVD 488
            ELYKGYTVDA NGHV DLV  +R+VPA+LKE+TKGWDVVGVD
Sbjct:  124 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKGWDVVGVD 165
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BLAST of mRNA_E-siliculosus-1a_F_contig11428.942.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.160e-13
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:  363 ELYKGYTVDARNGHVVDLVRTKRNVPAQLKERTKGWDVVGVD 488
            ELYKGYTVDA NGHV DLV  +R+VPA+LKE+TKGWDVVGVD
Sbjct:  118 ELYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKGWDVVGVD 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11428.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLD5_9PHAE2.560e-1876.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK3_9PHAE4.340e-1480.95Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDU2_ECTSI2.160e-1380.95DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11428contigE-siliculosus-1a_F_contig11428:1244..1732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size450
Model size490
Exons1
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.5357196-CDS-E-siliculosus-1a_F_contig11428:1243..16931622927657.5357196-CDS-E-siliculosus-1a_F_contig11428:1243..1693Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11428 1244..1693 +
1696318626.914488-CDS-E-siliculosus-1a_F_contig11428:1243..16931696318626.914488-CDS-E-siliculosus-1a_F_contig11428:1243..1693Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11428 1244..1693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.550031-UTR-E-siliculosus-1a_F_contig11428:1693..17321622927657.550031-UTR-E-siliculosus-1a_F_contig11428:1693..1732Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11428 1694..1732 +
1696318626.9259448-UTR-E-siliculosus-1a_F_contig11428:1693..17321696318626.9259448-UTR-E-siliculosus-1a_F_contig11428:1693..1732Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11428 1694..1732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11428.942.1prot_E-siliculosus-1a_F_contig11428.942.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11428 1244..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11428.942.1

>prot_E-siliculosus-1a_F_contig11428.942.1 ID=prot_E-siliculosus-1a_F_contig11428.942.1|Name=mRNA_E-siliculosus-1a_F_contig11428.942.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp
PWRPHRPRLLLRLQQRSRLPPARRRRKRRPPLPAEPPPCKPAKTTGVPLR
ESLRRLKNRAQDEEACCLRCHCEEEEQSCSRHVGGFQESPGDVIVESPAK
ATTITELPKKVAAGGAAAVEGSCTRATPLTPATATWWTWSARRGTCRHS*
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mRNA from alignment at E-siliculosus-1a_F_contig11428:1244..1732+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11428.942.1 ID=mRNA_E-siliculosus-1a_F_contig11428.942.1|Name=mRNA_E-siliculosus-1a_F_contig11428.942.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=489bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11428:1244..1732+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCATGGCGTCCGCATCGTCCACGACTTCTGCTTCGGCTGCAACAAAGGTC
AAGGTTGCCGCCGGCGCGAAGGAGACGAAAACGACGACCGCCACTGCCGG
CAGAACCGCCCCCCTGCAAACCTGCAAAAACCACTGGAGTACCACTACGA
GAAAGCCTTCGACGGCTGAAAAATCGCGCCCAAGACGAAGAAGCCTGTTG
CCTCCGCTGCCACTGCGAAGAAGAAGAGCAATCCTGCAGCCGTCATGTTG
GAGGGTTCCAAGAGAGTCCTGGTGATGTGATCGTGGAGTCCCCGGCCAAG
GCTACGACAATCACGGAGCTCCCCAAGAAGGTCGCCGCTGGCGGCGCGGC
GGCGGTTGAGGGGAGCTGTACAAGGGCTACACCGTTGACGCCCGCAACGG
CCACGTGGTGGACCTGGTCCGCACGAAGAGGAACGTGCCGGCACAGTTGA
AGGAGAGGACCAAGGGCTGGGATGTGGTTGGCGTGGACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11428:1244..1732+

>mRNA_E-siliculosus-1a_F_contig11428.942.1 ID=mRNA_E-siliculosus-1a_F_contig11428.942.1|Name=mRNA_E-siliculosus-1a_F_contig11428.942.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11428:1244..1732+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCATGGCGTCCGCATCGTCCACGACTTCTGCTTCGGCTGCAACAAAGGTC
AAGGTTGCCGCCGGCGCGAAGGAGACGAAAACGACGACCGCCACTGCCGG
CAGAACCGCCCCCCTGCAAACCTGCAAAAACCACTGGAGTACCACTACGA
GAAAGCCTTCGACGGCTGAAAAATCGCGCCCAAGACGAAGAAGCCTGTTG
CCTCCGCTGCCACTGCGAAGAAGAAGAGCAATCCTGCAGCCGTCATGTTG
GAGGGTTCCAAGAGAGTCCTGGTGATGTGATCGTGGAGTCCCCGGCCAAG
GCTACGACAATCACGGAGCTCCCCAAGAAGGTCGCCGCTGGCGGCGCGGC
GGCGGTTGAGGGGAGCTGTACAAGGGCTACACCGTTGACGCCCGCAACGG
CCACGTGGTGGACCTGGTCCGCACGAAGAGGAACGTGCCGGCACAGTTGA
CCATGGCGTCCGCATCGTCCACGACTTCTGCTTCGGCTGCAACAAAGGTC
AAGGTTGCCGCCGGCGCGAAGGAGACGAAAACGACGACCGCCACTGCCGG
CAGAACCGCCCCCCTGCAAACCTGCAAAAACCACTGGAGTACCACTACGA
GAAAGCCTTCGACGGCTGAAAAATCGCGCCCAAGACGAAGAAGCCTGTTG
CCTCCGCTGCCACTGCGAAGAAGAAGAGCAATCCTGCAGCCGTCATGTTG
GAGGGTTCCAAGAGAGTCCTGGTGATGTGATCGTGGAGTCCCCGGCCAAG
GCTACGACAATCACGGAGCTCCCCAAGAAGGTCGCCGCTGGCGGCGCGGC
GGCGGTTGAGGGGAGCTGTACAAGGGCTACACCGTTGACGCCCGCAACGG
CCACGTGGTGGACCTGGTCCGCACGAAGAGGAACGTGCCGGCACAGTTGA
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