mRNA_E-siliculosus-1a_F_contig1142.940.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1142.940.1
Unique NamemRNA_E-siliculosus-1a_F_contig1142.940.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1142.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1142contigE-siliculosus-1a_F_contig1142:35197..36084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size366
Model size368
Exons2
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-14_005590.1
Ec32 ortholog descriptionHypothetical protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1142.940.1prot_E-siliculosus-1a_F_contig1142.940.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1142 35199..36084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.3966432-UTR-E-siliculosus-1a_F_contig1142:35196..351981622927657.3966432-UTR-E-siliculosus-1a_F_contig1142:35196..35198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1142 35197..35198 -
1696318626.8711426-UTR-E-siliculosus-1a_F_contig1142:35196..351981696318626.8711426-UTR-E-siliculosus-1a_F_contig1142:35196..35198Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1142 35197..35198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927657.4097-CDS-E-siliculosus-1a_F_contig1142:35198..353581622927657.4097-CDS-E-siliculosus-1a_F_contig1142:35198..35358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 35199..35358 -
1696318626.8826754-CDS-E-siliculosus-1a_F_contig1142:35198..353581696318626.8826754-CDS-E-siliculosus-1a_F_contig1142:35198..35358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 35199..35358 -
1622927657.425249-CDS-E-siliculosus-1a_F_contig1142:35878..360841622927657.425249-CDS-E-siliculosus-1a_F_contig1142:35878..36084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 35879..36084 -
1696318626.892203-CDS-E-siliculosus-1a_F_contig1142:35878..360841696318626.892203-CDS-E-siliculosus-1a_F_contig1142:35878..36084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 35879..36084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1142.940.1

>prot_E-siliculosus-1a_F_contig1142.940.1 ID=prot_E-siliculosus-1a_F_contig1142.940.1|Name=mRNA_E-siliculosus-1a_F_contig1142.940.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=122bp
MGNERSDTREPNKNDFKELLDEGKKRLEQAEQEQQLRERAEVVGAMGGLA
LEDLLADLREPSFSRQQNEKLRQGMAKKLRAKVARLFGRVMSQYVTGSCS
SGQVTRLVLLHPTEIRPTIGG*
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mRNA from alignment at E-siliculosus-1a_F_contig1142:35197..36084-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1142.940.1 ID=mRNA_E-siliculosus-1a_F_contig1142.940.1|Name=mRNA_E-siliculosus-1a_F_contig1142.940.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=888bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1142:35197..36084- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCAATGAACGGTCAGACACGCGAGAACCGAACAAGAACGATTTCAA
GGAGCTCCTTGATGAGGGGAAAAAACGCTTGGAGCAGGCGGAACAGGAGC
AGCAGCTCAGAGAGCGCGCTGAAGTCGTGGGGGCAATGGGTGGTTTGGCC
CTCGAAGACCTACTGGCCGACCTACGCGAGCCAAGCTTTTCTCGGCAGCA
AAACGAGTGAGCGTCTTTAGATCCTACTGAACTTCAGTGGTGGTAGCCGC
CTGCAGTGCGCAGTTCGCCTGCCGTGTCTCTCGCGGTACAGTACACAGTT
TCCGACCTCTGCTACTATTGCCGAGTTAAACGTTTTACACCAGTAGACCA
CGATATAGGTATCTTGGTAAGTGACGCAAGTACAACCAGTAAAGATCCGA
AACCCTACGAACGATGTTCTCGGGGTCTGAAGATGTTTACAAAGAAAGAT
CCTCTGCCTACTGTGACCAGCCGGAGGGTGAAAGGGTGCCCCCGAGGCTT
CCCGAGGCTCACTCTCACATTCGACCATTCTTAAACCTAGCACAGGCGAC
CAACGTCGGCTACGCTTGGCAATTCCTCGCCACATTACAATACAATAAGA
GCGAATTACCACTGCTGATGAACGGTTAGACTAATCACCACTTTAGGGAC
CCTTACTCGGTAACAGAGAACGGGTATTCTCATAGTGCGTGCTTACCACC
ATCGTTGTATTTGTCCCTCTCAACAGGAAGCTACGACAGGGCATGGCAAA
AAAACTGAGGGCTAAAGTTGCACGACTCTTCGGCCGCGTCATGAGTCAGT
ACGTTACAGGGTCGTGCAGTTCAGGTCAGGTGACTCGTTTGGTTTTACTT
CATCCCACGGAGATTCGACCTACCATTGGTGGTTGATT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1142:35197..36084-

>mRNA_E-siliculosus-1a_F_contig1142.940.1 ID=mRNA_E-siliculosus-1a_F_contig1142.940.1|Name=mRNA_E-siliculosus-1a_F_contig1142.940.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=732bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1142:35197..36084- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCAATGAACGGTCAGACACGCGAGAACCGAACAAGAACGATTTCAA
GGAGCTCCTTGATGAGGGGAAAAAACGCTTGGAGCAGGCGGAACAGGAGC
AGCAGCTCAGAGAGCGCGCTGAAGTCGTGGGGGCAATGGGTGGTTTGGCC
CTCGAAGACCTACTGGCCGACCTACGCGAGCCAAGCTTTTCTCGGCAGCA
AAACGAATGGGCAATGAACGGTCAGACACGCGAGAACCGAACAAGAACGA
TTTCAAGGAGCTCCTTGATGAGGGGAAAAAACGCTTGGAGCAGGCGGAAC
AGGAGCAGCAGCTCAGAGAGCGCGCTGAAGTCGTGGGGGCAATGGGTGGT
TTGGCCCTCGAAGACCTACTGGCCGACCTACGCGAGCCAAGCTTTTCTCG
GCAGCAAAACGAGAAGCTACGACAGGGCATGGCAAAAAAACTGAGGGCTA
AAGTTGCACGACTCTTCGGCCGCGTCATGAGTCAGTACGTTACAGGGTCG
TGCAGTTCAGGTCAGGTGACTCGTTTGGTTTTACTTCATCCCACGGAGAT
TCGACCTACCATTGGTGGTTGAGAAGCTACGACAGGGCATGGCAAAAAAA
CTGAGGGCTAAAGTTGCACGACTCTTCGGCCGCGTCATGAGTCAGTACGT
TACAGGGTCGTGCAGTTCAGGTCAGGTGACTCGTTTGGTTTTACTTCATC
CCACGGAGATTCGACCTACCATTGGTGGTTGA
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