mRNA_E-siliculosus-1a_F_contig1142.936.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI) HSP 1 Score: 384 bits (985), Expect = 1.260e-129 Identity = 189/192 (98.44%), Postives = 192/192 (100.00%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 578
VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRET+GGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEE+KSGAGVM+IALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK
Sbjct: 78 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 269
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA) HSP 1 Score: 195 bits (495), Expect = 4.630e-56 Identity = 103/192 (53.65%), Postives = 133/192 (69.27%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 578
VICAVYGPHAQ+ D+AFSEEGQL+CD APFA P +R G+ D+ERELS L+Q LE+S+++ LTK+ V V+V VL ADGG L A TCAS+ALA+A IEL+DLV AC+ Q++LDPT +E+ + G + +A+MP S++VTQW Q GR + A A+ELC DGC V MM A+L A K
Sbjct: 68 VICAVYGPHAQSM-DTAFSEEGQLKCDLRMAPFAQP--KRSEVRGQTDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLAQVDK 256
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.800e-54 Identity = 106/216 (49.07%), Postives = 139/216 (64.35%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPG---------GRRETKGGKKDD-ERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCG-TQMVLDPTK---------EEQKSG----------AGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 560
VIC + GPHA + D FSE+GQL+ D YAPFA G RR+ ++ D ER+ S L+RQ LE+SIQ+H L KS++ V++ VLQADGGEL A TCAS+AL+DAGIEL+DLV CSVG G ++++LDPT+ E+ SG AGVM++ P SQ+VTQWWQEG+FD + +A L LC DGC +HK+M+ KL
Sbjct: 60 VICTISGPHAISRADDTFSEQGQLRVDLRYAPFARVGQSQYETNDRDRRDHHPARQTDGERDASALIRQALEASIQMHLLPKSLIDVYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: K3XAM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM5_GLOUD) HSP 1 Score: 168 bits (425), Expect = 1.420e-45 Identity = 88/187 (47.06%), Postives = 122/187 (65.24%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK-MMEAKL 560
V+C+VYGP T FS EGQL CDF YAPFA P GRRE G+ DE E+S++L Q L ++ + +L K VV ++V+VL++DGGELA A CAS+AL DA +E+YD+VTA G +++VLDP +E+ G G + +A MP +VT Q G+ + ++ EA++LCTD C V K +M A L
Sbjct: 75 VVCSVYGPRNDTRSRREFSNEGQLVCDFKYAPFADPVGRRER--GQDPDELEMSSILTQALSPAVMLSKLPKCVVSIYVVVLESDGGELAAAINCASLALIDAAVEMYDIVTASGAGIVNSKVVLDPCHKEEVYGDGKLLLAFMPTMGKVTYMLQAGKIEHSELQEAVDLCTDACNGVMKTLMTASL 259
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A8K1CTD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD4_PYTOL) HSP 1 Score: 167 bits (424), Expect = 1.590e-45 Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK 542
V+C+VYGP T FS+EGQL CDF YAPFA GRRE G+ DDE E+S++L Q L ++ + +L K VV ++V+VL++DG +LA A CAS+AL DA +E+YD+VTA S G +Q+VLDP EE+ G G + +A MP Q+T Q G+ ++ EA++LCTD C V K
Sbjct: 70 VVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADSTGRRER--GQDDDELEMSSILTQALSPAVMLAKLPKCVVSIYVVVLESDGSDLAAAINCASLALIDAAVEMYDIVTAASAGIVDSQIVLDPCHEEEVHGEGNVVMAYMPSVGQLTHMVQSGKIQHGQLQEAVDLCTDACSGVMK 247
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A2D4C421_PYTIN (Exosome complex exonuclease MTR3-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C421_PYTIN) HSP 1 Score: 164 bits (414), Expect = 5.680e-44 Identity = 87/196 (44.39%), Postives = 122/196 (62.24%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKLKASTTKNDA 587
V+C+VYGP T FS+EGQL CDF YAPFA GRRE G+ DDE ELS++L Q L ++ + +L K VV + V+VL++DGGELA A CAS+AL DA +E+YD+VTA S +++VLDP E+ G G + +A MP ++T Q GR ++ EA++LCT C G + M+ A + + + A
Sbjct: 72 VVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGRRER--GQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDSRVVLDPCAAEETRGDGKVVLAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTXACTGLMKNMLTAAVTQTLQREHA 265
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: D0NP71_PHYIT (Exosome complex exonuclease MTR3-like protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NP71_PHYIT) HSP 1 Score: 162 bits (409), Expect = 2.020e-43 Identity = 83/187 (44.39%), Postives = 119/187 (63.64%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
V+CAVYGP T FS++GQL CD YAPFA RRE G+ DE ELS ++ + L ++ +H+L K ++ V V +L+ DGG LA A CAS+ALADA +E+YD+VTA S G +VLDP++EE++ G G +++A MP +VT Q G+ ++ EA++LCTD C G + ++ A L
Sbjct: 63 VLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASL 247
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A3F2RG10_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG10_9STRA) HSP 1 Score: 162 bits (409), Expect = 2.020e-43 Identity = 86/187 (45.99%), Postives = 118/187 (63.10%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
V+CAVYGP A T FS +GQL CD +APFA RRE G+ DE ELS ++ + L ++ +H+L K VV V V VL+ DGG A A CAS+ALADA +E+YD+VTA S G + +VLDP++EE++ G G +++A MP QVT Q G+ ++ EA++LCTD C G ++ A L
Sbjct: 63 VVCAVYGPRADTRPRREFSNDGQLVCDVKFAPFADALTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVVSVFVTVLENDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKLALAYMPSMGQVTYMLQAGQIHHTQLQEAVDLCTDACTGVTRSLLTASL 247
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: H3GV34_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GV34_PHYRM) HSP 1 Score: 160 bits (406), Expect = 5.550e-43 Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
V+CAVYGP T FS++GQL CD YAPFA RRE G+ DE ELS ++ + L ++ +H+L K V+ + V VL+ DGG A A CAS+ALADA +E+YD+VTA S G + +VLDP++EE++ G G M++A MP +VT Q G+ ++ EA++LCTD C G ++ A L
Sbjct: 63 VVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKWTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVLSLFVTVLEDDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKMALAYMPSMGRVTYMLQAGKVHHTQLQEAVDLCTDACTGVTRTLLTASL 247
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A0P1AE71_PLAHL (Exosome complex exonuclease mtr3-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE71_PLAHL) HSP 1 Score: 157 bits (398), Expect = 7.150e-42 Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 3
Query: 3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
VICAVYGP T FS++GQL CD +APFA RRE G+ DE ELS +L + L ++ +H+L K V+ V + VL+ DGG +A + CAS+ALADA +E+YD+VTA S G ++LDP KEE++SG G +++A MP +VT Q G+ ++ EA++LCTD C G ++ A L
Sbjct: 58 VICAVYGPRNDTRPRREFSKDGQLVCDVKFAPFAEEMTRRER--GQDSDEMELSAILEEALTPAVMLHKLPKCVLSVFLTVLEDDGGVIAASINCASLALADAAVEMYDVVTASSAGVVNGTVLLDPLKEEEQSGQGKLALAYMPSVGRVTFMLQSGKIHHTQLQEAVDLCTDACTGVTRSLVTASL 242 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1142.936.1 >prot_E-siliculosus-1a_F_contig1142.936.1 ID=prot_E-siliculosus-1a_F_contig1142.936.1|Name=mRNA_E-siliculosus-1a_F_contig1142.936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp MPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQAback to top mRNA from alignment at E-siliculosus-1a_F_contig1142:737..2734+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1142.936.1 ID=mRNA_E-siliculosus-1a_F_contig1142.936.1|Name=mRNA_E-siliculosus-1a_F_contig1142.936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1142:737..2734+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1142:737..2734+ >mRNA_E-siliculosus-1a_F_contig1142.936.1 ID=mRNA_E-siliculosus-1a_F_contig1142.936.1|Name=mRNA_E-siliculosus-1a_F_contig1142.936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1142:737..2734+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |