mRNA_E-siliculosus-1a_F_contig1142.936.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1142.936.1
Unique NamemRNA_E-siliculosus-1a_F_contig1142.936.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: D8LC92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC92_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.260e-129
Identity = 189/192 (98.44%), Postives = 192/192 (100.00%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 578
            VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRET+GGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEE+KSGAGVM+IALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK
Sbjct:   78 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEEKSGAGVMTIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 269          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A835ZHR0_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHR0_9STRA)

HSP 1 Score: 195 bits (495), Expect = 4.630e-56
Identity = 103/192 (53.65%), Postives = 133/192 (69.27%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKLKASTTK 578
            VICAVYGPHAQ+  D+AFSEEGQL+CD   APFA P  +R    G+ D+ERELS  L+Q LE+S+++  LTK+ V V+V VL ADGG L  A TCAS+ALA+A IEL+DLV AC+      Q++LDPT +E+ +  G + +A+MP S++VTQW Q GR    + A A+ELC DGC  V  MM A+L A   K
Sbjct:   68 VICAVYGPHAQSM-DTAFSEEGQLKCDLRMAPFAQP--KRSEVRGQTDEERELSATLQQALEASVRLDLLTKTAVDVYVTVLAADGGVLGAAITCASLALANASIELFDLVAACTAACADGQVLLDPTAQEEAAAGGSVLVAVMPSSREVTQWRQRGRLPSAQAAAAVELCMDGCAGVATMMRARLLAQVDK 256          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A7S2UZ52_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ52_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.800e-54
Identity = 106/216 (49.07%), Postives = 139/216 (64.35%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPG---------GRRETKGGKKDD-ERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCG-TQMVLDPTK---------EEQKSG----------AGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEAKL 560
            VIC + GPHA +  D  FSE+GQL+ D  YAPFA  G          RR+    ++ D ER+ S L+RQ LE+SIQ+H L KS++ V++ VLQADGGEL  A TCAS+AL+DAGIEL+DLV  CSVG  G ++++LDPT+         E+  SG          AGVM++   P SQ+VTQWWQEG+FD + +A  L LC DGC  +HK+M+ KL
Sbjct:   60 VICTISGPHAISRADDTFSEQGQLRVDLRYAPFARVGQSQYETNDRDRRDHHPARQTDGERDASALIRQALEASIQMHLLPKSLIDVYIWVLQADGGELGAAVTCASLALSDAGIELFDLVVGCSVGCLGGSRVLLDPTEVEISQQRAPEDSSSGGARGGKQGAKAGVMTVTFTPASQEVTQWWQEGQFDQESMARGLALCIDGCLVMHKIMKEKL 275          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: K3XAM5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM5_GLOUD)

HSP 1 Score: 168 bits (425), Expect = 1.420e-45
Identity = 88/187 (47.06%), Postives = 122/187 (65.24%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK-MMEAKL 560
            V+C+VYGP   T     FS EGQL CDF YAPFA P GRRE   G+  DE E+S++L Q L  ++ + +L K VV ++V+VL++DGGELA A  CAS+AL DA +E+YD+VTA   G   +++VLDP  +E+  G G + +A MP   +VT   Q G+ +  ++ EA++LCTD C  V K +M A L
Sbjct:   75 VVCSVYGPRNDTRSRREFSNEGQLVCDFKYAPFADPVGRRER--GQDPDELEMSSILTQALSPAVMLSKLPKCVVSIYVVVLESDGGELAAAINCASLALIDAAVEMYDIVTASGAGIVNSKVVLDPCHKEEVYGDGKLLLAFMPTMGKVTYMLQAGKIEHSELQEAVDLCTDACNGVMKTLMTASL 259          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A8K1CTD4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD4_PYTOL)

HSP 1 Score: 167 bits (424), Expect = 1.590e-45
Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHK 542
            V+C+VYGP   T     FS+EGQL CDF YAPFA   GRRE   G+ DDE E+S++L Q L  ++ + +L K VV ++V+VL++DG +LA A  CAS+AL DA +E+YD+VTA S G   +Q+VLDP  EE+  G G + +A MP   Q+T   Q G+    ++ EA++LCTD C  V K
Sbjct:   70 VVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADSTGRRER--GQDDDELEMSSILTQALSPAVMLAKLPKCVVSIYVVVLESDGSDLAAAINCASLALIDAAVEMYDIVTAASAGIVDSQIVLDPCHEEEVHGEGNVVMAYMPSVGQLTHMVQSGKIQHGQLQEAVDLCTDACSGVMK 247          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A2D4C421_PYTIN (Exosome complex exonuclease MTR3-like protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C421_PYTIN)

HSP 1 Score: 164 bits (414), Expect = 5.680e-44
Identity = 87/196 (44.39%), Postives = 122/196 (62.24%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKLKASTTKNDA 587
            V+C+VYGP   T     FS+EGQL CDF YAPFA   GRRE   G+ DDE ELS++L Q L  ++ + +L K VV + V+VL++DGGELA A  CAS+AL DA +E+YD+VTA S     +++VLDP   E+  G G + +A MP   ++T   Q GR    ++ EA++LCT  C G +  M+ A +  +  +  A
Sbjct:   72 VVCSVYGPRNDTRSRREFSQEGQLVCDFKYAPFADASGRRER--GQDDDELELSSILTQALSPAVMLSKLPKCVVSIFVVVLESDGGELAAAINCASLALVDAAVEMYDVVTAASAAVVDSRVVLDPCAAEETRGDGKVVLAYMPTLGRLTHTLQSGRLQHAQLQEAVDLCTXACTGLMKNMLTAAVTQTLQREHA 265          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: D0NP71_PHYIT (Exosome complex exonuclease MTR3-like protein n=16 Tax=Peronosporaceae TaxID=4777 RepID=D0NP71_PHYIT)

HSP 1 Score: 162 bits (409), Expect = 2.020e-43
Identity = 83/187 (44.39%), Postives = 119/187 (63.64%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
            V+CAVYGP   T     FS++GQL CD  YAPFA    RRE   G+  DE ELS ++ + L  ++ +H+L K ++ V V +L+ DGG LA A  CAS+ALADA +E+YD+VTA S G     +VLDP++EE++ G G +++A MP   +VT   Q G+    ++ EA++LCTD C G +  ++ A L
Sbjct:   63 VLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYDVVTASSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSMGRVTYMLQAGKIHHTQLQEAVDLCTDACTGVIRSLLTASL 247          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A3F2RG10_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG10_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.020e-43
Identity = 86/187 (45.99%), Postives = 118/187 (63.10%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
            V+CAVYGP A T     FS +GQL CD  +APFA    RRE   G+  DE ELS ++ + L  ++ +H+L K VV V V VL+ DGG  A A  CAS+ALADA +E+YD+VTA S G   + +VLDP++EE++ G G +++A MP   QVT   Q G+    ++ EA++LCTD C G    ++ A L
Sbjct:   63 VVCAVYGPRADTRPRREFSNDGQLVCDVKFAPFADALTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVVSVFVTVLENDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKLALAYMPSMGQVTYMLQAGQIHHTQLQEAVDLCTDACTGVTRSLLTASL 247          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: H3GV34_PHYRM (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3GV34_PHYRM)

HSP 1 Score: 160 bits (406), Expect = 5.550e-43
Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
            V+CAVYGP   T     FS++GQL CD  YAPFA    RRE   G+  DE ELS ++ + L  ++ +H+L K V+ + V VL+ DGG  A A  CAS+ALADA +E+YD+VTA S G   + +VLDP++EE++ G G M++A MP   +VT   Q G+    ++ EA++LCTD C G    ++ A L
Sbjct:   63 VVCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKWTRRER--GQDPDEMELSAIVEEALAPAVMLHKLPKCVLSLFVTVLEDDGGVFAAAINCASLALADAAVEMYDVVTAASAGIVNSTVVLDPSREEEQRGDGKMALAYMPSMGRVTYMLQAGKVHHTQLQEAVDLCTDACTGVTRTLLTASL 247          
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Match: A0A0P1AE71_PLAHL (Exosome complex exonuclease mtr3-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE71_PLAHL)

HSP 1 Score: 157 bits (398), Expect = 7.150e-42
Identity = 84/187 (44.92%), Postives = 118/187 (63.10%), Query Frame = 3
Query:    3 VICAVYGPHAQTGGDSAFSEEGQLQCDFSYAPFAMPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQADGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKSGAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGC-GCVHKMMEAKL 560
            VICAVYGP   T     FS++GQL CD  +APFA    RRE   G+  DE ELS +L + L  ++ +H+L K V+ V + VL+ DGG +A +  CAS+ALADA +E+YD+VTA S G     ++LDP KEE++SG G +++A MP   +VT   Q G+    ++ EA++LCTD C G    ++ A L
Sbjct:   58 VICAVYGPRNDTRPRREFSKDGQLVCDVKFAPFAEEMTRRER--GQDSDEMELSAILEEALTPAVMLHKLPKCVLSVFLTVLEDDGGVIAASINCASLALADAAVEMYDVVTASSAGVVNGTVLLDPLKEEEQSGQGKLALAYMPSVGRVTFMLQSGKIHHTQLQEAVDLCTDACTGVTRSLVTASL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1142.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC92_ECTSI1.260e-12998.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZHR0_9STRA4.630e-5653.65Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S2UZ52_9STRA2.800e-5449.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3XAM5_GLOUD1.420e-4547.06Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CTD4_PYTOL1.590e-4547.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C421_PYTIN5.680e-4444.39Exosome complex exonuclease MTR3-like protein n=2 ... [more]
D0NP71_PHYIT2.020e-4344.39Exosome complex exonuclease MTR3-like protein n=16... [more]
A0A3F2RG10_9STRA2.020e-4345.99Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
H3GV34_PHYRM5.550e-4344.92Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A0P1AE71_PLAHL7.150e-4244.92Exosome complex exonuclease mtr3-like protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1142contigE-siliculosus-1a_F_contig1142:737..2734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size486
Model size1301
Exons3
Ec32 orthologEc-14_005640.1
Ec32 ortholog descriptionMtr3 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0689@1,KOG1068@2759
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
KEGG ModuleM00391
KEGG Pathwayko03018,map03018
KEGG koko:K12587
Seed eggNOG ortholog2880.D8LC92
Seed ortholog evalue3.1e-81
Seed ortholog score307.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1142.936.1prot_E-siliculosus-1a_F_contig1142.936.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1142 841..2023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927653.1440241-UTR-E-siliculosus-1a_F_contig1142:736..8401622927653.1440241-UTR-E-siliculosus-1a_F_contig1142:736..840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1142 737..840 +
1696318626.6003728-UTR-E-siliculosus-1a_F_contig1142:736..8401696318626.6003728-UTR-E-siliculosus-1a_F_contig1142:736..840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1142 737..840 +
1622927653.197827-UTR-E-siliculosus-1a_F_contig1142:2023..27341622927653.197827-UTR-E-siliculosus-1a_F_contig1142:2023..2734Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1142 2024..2734 +
1696318626.639528-UTR-E-siliculosus-1a_F_contig1142:2023..27341696318626.639528-UTR-E-siliculosus-1a_F_contig1142:2023..2734Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1142 2024..2734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927653.1555166-CDS-E-siliculosus-1a_F_contig1142:840..9361622927653.1555166-CDS-E-siliculosus-1a_F_contig1142:840..936Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 841..936 +
1696318626.6140938-CDS-E-siliculosus-1a_F_contig1142:840..9361696318626.6140938-CDS-E-siliculosus-1a_F_contig1142:840..936Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 841..936 +
1622927653.165843-CDS-E-siliculosus-1a_F_contig1142:1209..13771622927653.165843-CDS-E-siliculosus-1a_F_contig1142:1209..1377Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 1210..1377 +
1696318626.6223838-CDS-E-siliculosus-1a_F_contig1142:1209..13771696318626.6223838-CDS-E-siliculosus-1a_F_contig1142:1209..1377Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 1210..1377 +
1622927653.185829-CDS-E-siliculosus-1a_F_contig1142:1801..20231622927653.185829-CDS-E-siliculosus-1a_F_contig1142:1801..2023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 1802..2023 +
1696318626.630811-CDS-E-siliculosus-1a_F_contig1142:1801..20231696318626.630811-CDS-E-siliculosus-1a_F_contig1142:1801..2023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1142 1802..2023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1142.936.1

>prot_E-siliculosus-1a_F_contig1142.936.1 ID=prot_E-siliculosus-1a_F_contig1142.936.1|Name=mRNA_E-siliculosus-1a_F_contig1142.936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp
MPGGRRETKGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQA
DGGELAVATTCASMALADAGIELYDLVTACSVGYCGTQMVLDPTKEEQKS
GAGVMSIALMPGSQQVTQWWQEGRFDGQKVAEALELCTDGCGCVHKMMEA
KLKASTTKNDA*
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mRNA from alignment at E-siliculosus-1a_F_contig1142:737..2734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1142.936.1 ID=mRNA_E-siliculosus-1a_F_contig1142.936.1|Name=mRNA_E-siliculosus-1a_F_contig1142.936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1998bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1142:737..2734+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTGATATGCGCTGTCTATGGGCCGCACGCGCAAACCGGAGGGGACAGC GCTTTCAGCGAAGAGGGGCAGCTCCAGTGCGATTTTTCCTACGCGCCGTT TGCGATGCCGGGAGGACGCCGGGAAACCAAGGGAGGGAAGAAGGACGATG AGCGGGAGCTGTCCACCTTGTTACGACAGACCCTAGAGTCTTCCATTCAG GTGAAACCACCGTCTAGCAAAATGGGTCTGCGTGTCACGTTACCGTATGC CCTTTTTGGCGGCATTTCTTGGGGGGACGGAAGGCGTGAATCACTGCTGG GGCGACGGGTGTCGTCGGGGGCTCTGGCATTTTTTGCTTTTGTGATGGCG AAGCACCAGCAGGTAACTTAGCTCTGCGGCAAGCTGCAGTGTTTGTTCAA GCGTTCAACGATGATGCGAGCAAGCTTGCCGAAATTTCGCGCCATGTGTG GCGCCCACTTCTGCTGTGCCCAGGTGCATCGACTCACCAAATCTGTCGTC GGGGTTCACGTCATGGTCCTTCAAGCAGACGGCGGGGAGCTTGCAGTTGC CACGACGTGCGCTTCAATGGCATTAGCTGACGCAGGGATAGAGCTCTACG ACCTTGTGACTGCATGCTCCGTGGGTTACTGTGGGACACAAGTGAGACCT TACTACCCACGGAGATTAACAACTATTGCGGCGTACCCACTTCCTCGAAC AAGGCGCCTTACTCATGCACGACATTGTCCCACTTTACGATGCAACTGGC TTGATTTCTTCAGCACCTACGTCGCAACCATGCCCCGCGCTTGCCGCTGA AGCGGCACCTCAAAGCGGTGTGCGTTAGGACCGACCTCGGCGCCCATCTC TGTAACACAGGCCCTTAGTTCGCCCCACTTCACCAGTAGAGCACACGAAA GGGGAATGTGGTCCTCGGTCCGACGAAACAAACGGGTAGCATGTGTCAGT TGACATGCTGTTGTAGTTCTTATCAGGAGGGACATGGAATGAACGGCGTG TGTCGACTGCCCTTTGTTGCGATCCATGTTGTTCCGGCAAACCGTCTGCA TCCCAACATCGACAGATGGTCTTGGACCCAACGAAAGAAGAACAAAAGAG CGGGGCGGGCGTGATGTCTATCGCTCTCATGCCAGGGTCGCAGCAGGTCA CACAGTGGTGGCAGGAAGGACGATTCGACGGACAAAAGGTCGCAGAGGCA CTCGAGCTTTGCACAGATGGCTGCGGCTGTGTCCACAAGATGATGGAGGC CAAGCTCAAAGCTTCCACGACGAAGAATGATGCTTAGAAGTGAATCATGT CGTTGTAGTTGTTCATTTCATGTTGGGGCAGTGTTGCACTACAAGTAATG TAATGTGTGTATGGGTGTCGTGCGTTTTGTTCAGTGTTCTTTGGATACCC TCTTTTTTGCCAGCAAACGCGGGGTACTTATCTATACCCCGCTCATCTTC CCCTTGTCTTATTTTGGGCAAACTTTGTGGAGATCAAGTGTCATCGTGTC TAACATTCACAACGGCGAAGCCAAATGGGGTCGTCGGCAAAAGGCCGACC ATGCACGAATCTTCACCGGGTGGATTCTCCATTCCTCGAATAAGGTTCCT GTAGCTGACCCACGGTGCCCCCCTTTGACTCACACTCACCCCGGTACGTC AAAAGAAAAAATCGTTTGAATCCACTGGGAACTTTGTTGCCTGAATGGCA CGGAAGGGCATTGTTCCAACTGCGTTGGCGGGTCAAAGCCATTTCTTCAC TGGACCCTCGACTTCATCGGGTAGCGGGTCCTTTATGTCTTGTTTTTCGC AACTAAGTCATCGTGTGCAGTTTATGGGCACTTCGGGCCATGGCAATCAT GGTCGATCCATGGATACCTGGGGCTCCGTGGTATGAAAACCTGAGTAGTA TCTCTTGCTCGGATGACACAAGGGGGCTGACGTCTCTCTTGTCGATTAGA CCTTTGTGTACATCGTTCAAGCCCATCATCCTGATGGGTACATGGACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1142:737..2734+

>mRNA_E-siliculosus-1a_F_contig1142.936.1 ID=mRNA_E-siliculosus-1a_F_contig1142.936.1|Name=mRNA_E-siliculosus-1a_F_contig1142.936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1142:737..2734+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGGGAGGACGCCGGGAAACCAAGGGAGGGAAGAAGGACGATGAGCG
GGAGCTGTCCACCTTGTTACGACAGACCCTAGAGTCTTCCATTCAGATGC
CGGGAGGACGCCGGGAAACCAAGGGAGGGAAGAAGGACGATGAGCGGGAG
CTGTCCACCTTGTTACGACAGACCCTAGAGTCTTCCATTCAGGTGCATCG
ACTCACCAAATCTGTCGTCGGGGTTCACGTCATGGTCCTTCAAGCAGACG
GCGGGGAGCTTGCAGTTGCCACGACGTGCGCTTCAATGGCATTAGCTGAC
GCAGGGATAGAGCTCTACGACCTTGTGACTGCATGCTCCGTGGGTTACTG
TGGGACACAAGTGCATCGACTCACCAAATCTGTCGTCGGGGTTCACGTCA
TGGTCCTTCAAGCAGACGGCGGGGAGCTTGCAGTTGCCACGACGTGCGCT
TCAATGGCATTAGCTGACGCAGGGATAGAGCTCTACGACCTTGTGACTGC
ATGCTCCGTGGGTTACTGTGGGACACAAATGGTCTTGGACCCAACGAAAG
AAGAACAAAAGAGCGGGGCGGGCGTGATGTCTATCGCTCTCATGCCAGGG
TCGCAGCAGGTCACACAGTGGTGGCAGGAAGGACGATTCGACGGACAAAA
GGTCGCAGAGGCACTCGAGCTTTGCACAGATGGCTGCGGCTGTGTCCACA
AGATGATGGAGGCCAAGCTCAAAGCTTCCACGACGAAGAATGATGCTTAG
ATGGTCTTGGACCCAACGAAAGAAGAACAAAAGAGCGGGGCGGGCGTGAT
GTCTATCGCTCTCATGCCAGGGTCGCAGCAGGTCACACAGTGGTGGCAGG
AAGGACGATTCGACGGACAAAAGGTCGCAGAGGCACTCGAGCTTTGCACA
GATGGCTGCGGCTGTGTCCACAAGATGATGGAGGCCAAGCTCAAAGCTTC
CACGACGAAGAATGATGCTTAG
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