mRNA_E-siliculosus-1a_F_contig11412.935.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11412.935.1
Unique NamemRNA_E-siliculosus-1a_F_contig11412.935.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11412.935.1 vs. uniprot
Match: D7G0H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H8_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 4.170e-37
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 GLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL 204
            GLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL
Sbjct:  202 GLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL 269
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BLAST of mRNA_E-siliculosus-1a_F_contig11412.935.1 vs. uniprot
Match: A0A6H5KW25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW25_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 5.710e-33
Identity = 61/68 (89.71%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 GLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL 204
            GLS +SAT WLGKEACLD ILGTERGL TLELTNNLGATPLIFACQENNK IAK LIAAGASLDAKDL
Sbjct:   22 GLSSVSATTWLGKEACLDPILGTERGLTTLELTNNLGATPLIFACQENNKGIAK-LIAAGASLDAKDL 88
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BLAST of mRNA_E-siliculosus-1a_F_contig11412.935.1 vs. uniprot
Match: A0A5C3MQ08_9AGAM (Ankyrin n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3MQ08_9AGAM)

HSP 1 Score: 55.8 bits (133), Expect = 2.100e-7
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 GLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNKDIAKKLIAAGASLDAKDL 204
            G++ L   +WL   + ++ +L T  G   ++  +  GATPL++AC++NN ++ ++L+A GA  DA+DL
Sbjct:   39 GVTVLGMASWLNLPSAVEVLLRTSSGRLLVDSVDAHGATPLMYACRDNNLEVVQQLVAYGARPDARDL 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11412.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0H8_ECTSI4.170e-37100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW25_9PHAE5.710e-3389.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5C3MQ08_9AGAM2.100e-735.29Ankyrin n=1 Tax=Heliocybe sulcata TaxID=5364 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11412contigE-siliculosus-1a_F_contig11412:1075..1281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size207
Model size207
Exons1
Ec32 orthologEc-20_002370.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
Seed eggNOG ortholog2880.D7G0H8
Seed ortholog evalue1.8e-30
Seed ortholog score137.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927653.1035242-CDS-E-siliculosus-1a_F_contig11412:1074..12811622927653.1035242-CDS-E-siliculosus-1a_F_contig11412:1074..1281Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11412 1075..1281 -
1696318626.5851424-CDS-E-siliculosus-1a_F_contig11412:1074..12811696318626.5851424-CDS-E-siliculosus-1a_F_contig11412:1074..1281Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11412 1075..1281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11412.935.1prot_E-siliculosus-1a_F_contig11412.935.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11412 1075..1281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11412.935.1

>prot_E-siliculosus-1a_F_contig11412.935.1 ID=prot_E-siliculosus-1a_F_contig11412.935.1|Name=mRNA_E-siliculosus-1a_F_contig11412.935.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
GLSPLSATAWLGKEACLDAILGTERGLATLELTNNLGATPLIFACQENNK
DIAKKLIAAGASLDAKDL*
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mRNA from alignment at E-siliculosus-1a_F_contig11412:1075..1281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11412.935.1 ID=mRNA_E-siliculosus-1a_F_contig11412.935.1|Name=mRNA_E-siliculosus-1a_F_contig11412.935.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=207bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11412:1075..1281- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCTGAGCCCCCTTTCGGCAACGGCCTGGTTGGGCAAGGAGGCTTGTCT
GGACGCCATTCTCGGCACCGAGCGCGGCCTGGCCACCCTCGAGCTGACCA
ACAACCTGGGCGCCACGCCCCTCATCTTCGCCTGCCAGGAGAACAACAAG
GACATCGCGAAGAAGCTCATTGCCGCTGGAGCGAGCCTCGACGCGAAAGA
CTTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11412:1075..1281-

>mRNA_E-siliculosus-1a_F_contig11412.935.1 ID=mRNA_E-siliculosus-1a_F_contig11412.935.1|Name=mRNA_E-siliculosus-1a_F_contig11412.935.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11412:1075..1281- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTCTGAGCCCCCTTTCGGCAACGGCCTGGTTGGGCAAGGAGGCTTGTCT
GGACGCCATTCTCGGCACCGAGCGCGGCCTGGCCACCCTCGAGCTGACCA
ACAACCTGGGCGCCACGCCCCTCATCTTCGCCTGCCAGGAGAACAACAAG
GACATCGCGAAGAAGCTCATTGCCGCTGGAGCGAGCCTCGACGCGAAAGA
CTTGTGAGGTCTGAGCCCCCTTTCGGCAACGGCCTGGTTGGGCAAGGAGG
CTTGTCTGGACGCCATTCTCGGCACCGAGCGCGGCCTGGCCACCCTCGAG
CTGACCAACAACCTGGGCGCCACGCCCCTCATCTTCGCCTGCCAGGAGAA
CAACAAGGACATCGCGAAGAAGCTCATTGCCGCTGGAGCGAGCCTCGACG
CGAAAGACTTGTGA
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