mRNA_E-siliculosus-1a_F_contig1141.932.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 180 bits (457), Expect = 6.130e-50 Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 2
Query: 236 GYDGGDCCECTCVDASFTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTCV 487
GYDGGDCCECTCVDASFTCGYGGFACIDPSAACVDDDNIT+DIAESCNDGGGYVASIGDG+CSDENN E CDYDGGDCCECTCV
Sbjct: 18 GYDGGDCCECTCVDASFTCGYGGFACIDPSAACVDDDNITEDIAESCNDGGGYVASIGDGFCSDENNNEVCDYDGGDCCECTCV 101
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 134 bits (336), Expect = 1.190e-34 Identity = 69/148 (46.62%), Postives = 94/148 (63.51%), Query Frame = 2
Query: 50 HVNSDMVVMISTPSLCLGLLGSALAMSSGTGTSTSTTGCEWELYSAL--VADGFCHQAFNNAECGYDGGDCCECTCVDASFTCG-YGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
H +++M ++ + LGLLG+A+ M S + +TT +++ A + +G C+ N ECG+DGGDCCECTC D +TCG Y G+ACIDP A CVDDD +T D+ E+C D + IG+G C N E+C YDGGDCCECTC
Sbjct: 49 HARRVIMMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACDAAQDIGNGRCNMGNNIEECGFDGGDCCECTCEDGEYTCGQYYGYACIDPDATCVDDDAVTVDMMENCYD----PSRIGNGACDSLLNNEDCAYDGGDCCECTC 192
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 129 bits (325), Expect = 9.890e-34 Identity = 61/99 (61.62%), Postives = 73/99 (73.74%), Query Frame = 2
Query: 197 DGFCHQAFNNAECGYDGGDCCECTCVDA---SFTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
DG+C Q NN CGYDGGDCCECTCV+A ++C ACIDPSA CVDDD++T D+ E+C GYV S+G+G+C +ENN E C YDGGDCCECTC
Sbjct: 63 DGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANS-ACIDPSAPCVDDDDVTVDMVENC----GYVGSVGNGWCDEENNNEGCGYDGGDCCECTC 156
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.230e-33 Identity = 62/98 (63.27%), Postives = 69/98 (70.41%), Query Frame = 2
Query: 191 VADGFCHQAFNNAECGYDGGDCCECTCVDASFTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
+ADG C Q NN ECGYDGGDCC CTC+D + CG GFACIDPSA C DDD++T D E+C V SIGDG C +NN EEC YDGGDCC CTC
Sbjct: 184 LADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSAECADDDDVTVDTVENCG-----VRSIGDGQCDLDNNREECHYDGGDCCSCTC 276
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 128 bits (321), Expect = 2.220e-33 Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 2
Query: 197 DGFCHQAFNNAECGYDGGDCCECTCV-DASFTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
DGFC+ NN +CGYDGGDCCECTCV D S G FACIDP+A CVDDD++T D E+C + +GDGYC NNIE CDYDGGDCCECTC
Sbjct: 64 DGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENC-----MMEYLGDGYCDTYNNIEICDYDGGDCCECTC 155
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 131 bits (329), Expect = 2.200e-32 Identity = 64/113 (56.64%), Postives = 75/113 (66.37%), Query Frame = 2
Query: 191 VADGFCHQAFNNAECGYDGGDCCECTCV------------DASFTCGYGG--FACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTCV 487
+ DG+C Q NN CGYDGGDCCECTCV D + C GG FACIDP+A CV+DD+IT D+ E+C GYV +GDG+C +ENN E C YDGGDCCECTCV
Sbjct: 59 LGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENC----GYVRGLGDGWCHEENNNELCGYDGGDCCECTCV 167
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI) HSP 1 Score: 119 bits (299), Expect = 4.910e-32 Identity = 62/118 (52.54%), Postives = 78/118 (66.10%), Query Frame = 2
Query: 149 TSTTGCEWELYSALVADGFCHQAFNNAECGYDGGDCCECTCVDA------SFTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
T+ + W++ A V DG C + NN CGYDGGDCCECTCV + S +C YG FACIDP+A+C D D T D+A++C Y SIG+GYC+ +NN +C YDGGDCCECTC
Sbjct: 4 TAASAHAWDI--ASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYG-FACIDPNASCFDKD-FTLDMADNC-----YHNSIGNGYCNCQNNNADCGYDGGDCCECTC 112
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 125 bits (315), Expect = 5.270e-31 Identity = 68/144 (47.22%), Postives = 86/144 (59.72%), Query Frame = 2
Query: 74 MISTPSLCLGLLGSALAMSSGTGTSTSTTGCEWELYSALVADGFCHQAFNNAECGYDGGDCCECTCV-----DASFTCGYGG--FACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
M S LG+LG+A+ +SS S S++GC W+ AL DG+C NNAECGYDGGDCCECTC D + C G FAC+DP A C +D +T + ++ C+ +GDG+C NN E C YDGGDCCECTC
Sbjct: 1 MTKHSSRLLGVLGAAVVLSSVAANSLSSSGC-WD---ALYGDGYCTPPNNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECD-----FWDLGDGWCDQVNNNELCGYDGGDCCECTC 135
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE) HSP 1 Score: 117 bits (294), Expect = 9.530e-31 Identity = 66/133 (49.62%), Postives = 81/133 (60.90%), Query Frame = 2
Query: 74 MISTPSLCLGLLGSALAMSSGTGTSTSTTGCEWELYSALVADGFCHQAFNNAECGYDGGDCCECTCVDAS------FTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDY 454
M S LG+LG+A+ +SS S S+ C WE + DGFC Q NNAECGYDGGDCCECTC S + C ACIDP A+CVDDD++T ++ E+C +VA IGDGYC D NN ECD+
Sbjct: 1 MTKHSSRLLGVLGAAVFLSSVAAYSYSSDRC-WEYE---IGDGFCTQHNNNAECGYDGGDCCECTCQTQSDDDYYSWGCNKDYMACIDPDASCVDDDDVTAEMVENCE----WVAGIGDGYCHDGNNKAECDF 125
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Match: D7G6I3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I3_ECTSI) HSP 1 Score: 115 bits (289), Expect = 2.150e-30 Identity = 51/84 (60.71%), Postives = 61/84 (72.62%), Query Frame = 2
Query: 236 GYDGGDCCECTCV-DASFTCGYGGFACIDPSAACVDDDNITDDIAESCNDGGGYVASIGDGYCSDENNIEECDYDGGDCCECTC 484
GYDGGDCCECTCV + + CG GG+ACIDP+A CV+DD++T IA +C IGD YC + NN+EEC YDGGDCC CTC
Sbjct: 30 GYDGGDCCECTCVSEGEYECGAGGYACIDPAAECVNDDDVTFQIASTC-----VADMIGDAYCDEPNNVEECGYDGGDCCPCTC 108 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1141.932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1141.932.1 >prot_E-siliculosus-1a_F_contig1141.932.1 ID=prot_E-siliculosus-1a_F_contig1141.932.1|Name=mRNA_E-siliculosus-1a_F_contig1141.932.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=141bp MVVMISTPSLCLGLLGSALAMSSGTGTSTSTTGCEWELYSALVADGFCHQback to top mRNA from alignment at E-siliculosus-1a_F_contig1141:9565..12425+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1141.932.1 ID=mRNA_E-siliculosus-1a_F_contig1141.932.1|Name=mRNA_E-siliculosus-1a_F_contig1141.932.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2861bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1141:9565..12425+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1141:9565..12425+ >mRNA_E-siliculosus-1a_F_contig1141.932.1 ID=mRNA_E-siliculosus-1a_F_contig1141.932.1|Name=mRNA_E-siliculosus-1a_F_contig1141.932.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1141:9565..12425+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |