mRNA_E-siliculosus-1a_F_contig114.929.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A6H5JXY9_9PHAE (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY9_9PHAE) HSP 1 Score: 929 bits (2402), Expect = 0.000e+0 Identity = 522/574 (90.94%), Postives = 532/574 (92.68%), Query Frame = 1
Query: 1 RFKVADLARQGSLAEHASKRARRLVESWTPRGAAATADAEDAAASGAPREGGTVALKEGGAGADYEEERGRPESLGLLLVLCGLGADAKALLSGFASRTPPPGAADGDAAGVAAGGEADRGGPAIEREAREHAPERSTEFPQSFPVAAATPDDVESLNTSSPAADSSLAASSSAPDFVARAEATAAVG-VSDSRTTTGPDGSSKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMEDQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADGWRYYNNPRTGR 1719
+FKVADLARQGSLAEHASKRARRLVESWTPRGAAA AD EDAAASGAPR+GGTVALKEGG GAD +EE GRPESLGLLLVLCGLGADA+ALLSGFASRTP PGAADGDAAGV AGGEADRG AIEREA+EHAPER+TEFPQS PVAAATPD VESL TS+PAAD LAASSS PDFV RAEATA VG V DSRTTTGPD SKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMEDQDEEDEYLSGFSFAP XXXXXXXXXXXXXXXXXXXXX XX APSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMP+AHNAMGDVVGLERILSAPGINEGWRGVASSHP+CQIPVPRSLAELQAATNIAAR+RKPPARRTKADGWRYYNN RTGR
Sbjct: 829 KFKVADLARQGSLAEHASKRARRLVESWTPRGAAAAADTEDAAASGAPRKGGTVALKEGGPGADCDEEGGRPESLGLLLVLCGLGADAEALLSGFASRTPLPGAADGDAAGVVAGGEADRGAEAIEREAKEHAPERATEFPQSLPVAAATPDGVESLITSTPAADPPLAASSSTPDFVVRAEATAGVGGVLDSRTTTGPDSRSKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMEDQDEEDEYLSGFSFAPPLQPXXXXXXXXXXXXXXXXXXXXXFSGGVAPTGTPVGGXXG-APSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPNAHNAMGDVVGLERILSAPGINEGWRGVASSHPACQIPVPRSLAELQAATNIAARSRKPPARRTKADGWRYYNNRRTGR 1401
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: D7FPN7_ECTSI (ATP-dependent DNA helicase RecG n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN7_ECTSI) HSP 1 Score: 901 bits (2329), Expect = 0.000e+0 Identity = 511/578 (88.41%), Postives = 524/578 (90.66%), Query Frame = 1
Query: 1 RFKVADLARQGSLAEHASKRARRLVESWTPRGAAATA--DAEDAAASGAPREGGTVALKEGGAGADYEEERGRPESLGLLLVLCGLGADAKALLSGFASRTPPPGAADGDAAGVAAGGEADRGGPAI-EREAREHAPERSTEFPQSFPVAAATPDDVESLNTSSPAADSSLAASSSAPDFVARAEA--TAAVGVSDSRTTTGPDGSSKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMEDQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADGWRYYNNPRTGR 1719
+FKVADLARQGSLAEHASKRARRLVESWTPRGAAA A DAE+AAASGAPR GGTVALKEGGAGADY+EERGRPESLGLLLVLCGLGADAKALLSGFASRTPPPG ADGDAAGVAAG EREA+EHAP+R+TE PQSFPVAAATPDDVESLNTS+PAAD+ A+SSSAPDF ARAEA TAAVGVS SR T GP S KEPGPELAVPAAVYFDDEADFLEKSASEYAEMME QDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXX A GEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAE++DPG VGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEE+SRCGFSRFMMGQDMGVVCIVDSLRCLKE+SLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADGWRYYNN RTGR
Sbjct: 429 KFKVADLARQGSLAEHASKRARRLVESWTPRGAAAAAAADAEEAAASGAPRVGGTVALKEGGAGADYDEERGRPESLGLLLVLCGLGADAKALLSGFASRTPPPGGADGDAAGVAAGXXXXXXXXXXREREAKEHAPQRATELPQSFPVAAATPDDVESLNTSTPAADAPPASSSSAPDFAARAEAEATAAVGVSGSRMTAGPGSSGKEPGPELAVPAAVYFDDEADFLEKSASEYAEMMEGQDEEDEYLSGFSFAPXXXXXXXXXXXXXXXXXXXXXXSSGEVAPTGPPVGADGG----ASRGEGVAIIRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEFVDPGAVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEEVSRCGFSRFMMGQDMGVVCIVDSLRCLKESSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADGWRYYNNRRTGR 1002
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A7S1Z4X3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z4X3_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.140e-26 Identity = 79/229 (34.50%), Postives = 118/229 (51.53%), Query Frame = 1
Query: 952 VVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARP------------FPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQ----------DMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVAS 1572
+++D+ETTGL K + Q+AAKVLGS +P F+ Y+ P V VPP + ++TGI L G P F V+ F A+ +E++EGR + +AHNA FD L+ + R S +G+ D G+ VD+L+ +K N LWR + RP +F L V+ H+ M AHNA+GD++GLE IL +P +N W+ +A+
Sbjct: 264 LILDLETTGLCTKSSYITQIAAKVLGSTDPSDIFSAYVRPPV-RVPPHIEKLTGIKDHFLRHGGMDPSTGEMLHGPADEFYDVYVHFCAFC-----KEKSEGRP---ICIMAHNAAFDINMLQAHVRRLAASYQKLGKTGKELPFLTRDTGIQTSVDTLQMMKTNKLWRSSRTYSSALPRPSSFGLSNVYSHILKKPMKTAHNAVGDILGLEEILMSPTLN-CWKSIAN 482
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A7S3UQS9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQS9_HETAK) HSP 1 Score: 94.4 bits (233), Expect = 2.790e-18 Identity = 66/182 (36.26%), Postives = 90/182 (49.45%), Query Frame = 1
Query: 913 IRRADLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVP--PRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRC----------------GFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKAS 1404
++ L + +V++DVETTGL A RV+QLAAKVLGS P +FA YI P P RE+TGIT E+L GA PF + W F WL+ VV VAHNA FD +FL+ E+ R R + ++ V +V + + LK+ SLW +A+
Sbjct: 30 LKPVSLLQENVVIVLLDVETTGLDAGRHRVLQLAAKVLGSRAPGAAFATYIRPPE-NTPWAEGAREVTGITWEVLEKEGALPFSEAWALFRRWLA--------------EVVLVAHNAPFDRRFLEAEIERLLPNVGGXXXXXXXXXXXXXRGALARE-NVAAVVCTWKLLKDRSLWAPRAA 195
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A6U4I7J2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I7J2_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.320e-16 Identity = 84/257 (32.68%), Postives = 113/257 (43.97%), Query Frame = 1
Query: 1051 FAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLS------GVVA--------------EEQAE------GRGEG---------GVVFVAHNAQFDHKFLKEELSRCGFSR----------FMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSAPGINEGWRGVASSHPSCQIPVPRSLAELQAATNIAARTRKPPARRTKADG 1686
F+ ++ P GVP V ++TGI + L A+PFP VW +F WL+ G+ A E+AE G G VVF AHNA FD + L EL R G + F GQ+ GVV + +LR + ++W D +P P ++K +FEHL G EM AHNA GDV+GLERIL WR A + P +A L ++ T +PP A G
Sbjct: 1153 FSRFVQPSK-GVPEVVAKLTGIDDDRLREAEAQPFPAVWKDFRKWLARQRLQAGIKAAVLDKMSRLSFEDGREEAELYEELAGYAAGIDPESVPLPPVVFAAHNAPFDSRMLLAELQRHGEALNLPASGLAFGFGFGQE-GVVSFMCTLRLFRNKAVWH----DMRVPA-PPSYKQEVIFEHLVGEEMSAAHNAAGDVLGLERILVESSAGPIWRKHAMRAQTLTAIPPGMVASLG---HVPGLTFRPPPGTRAAPG 1399
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A7S3FQA1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQA1_9CHLO) HSP 1 Score: 80.5 bits (197), Expect = 4.730e-13 Identity = 69/223 (30.94%), Postives = 104/223 (46.64%), Query Frame = 1
Query: 916 RRADLSEGTHT-----VVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILS------APGINE 1551
+RAD S+ T +V +D+ETTGL A+ DRV+++A L + + +DP +P R RE+TG+T +I+AA+G F + + +++ ++A G G VAHNA+FD +FL E +RCG + +S R L R P P++F L + +H E H AM DV L R+ APG E
Sbjct: 5 QRADPSDAHPTSSSLDLVFLDLETTGLSAERDRVVEVA---LFAPKTGLRWTRLVDPERP-IPYRAREVTGLTDDIIAASGCGNFASIAEDIVSFV------KEAVESGARGPTLVAHNARFDARFLAAEFTRCGAE------------LPESWRFYDSLELARGVLGKG--PNAPRSFGLQSLNQHFGLPEPSREHRAMDDVDVLARVFGRLVSGMAPGALE 203
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A3E0KH43_9FIRM (Exonuclease domain-containing protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3E0KH43_9FIRM) HSP 1 Score: 80.1 bits (196), Expect = 4.910e-13 Identity = 74/225 (32.89%), Postives = 105/225 (46.67%), Query Frame = 1
Query: 949 VVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSA--PGINEG----WR--GVASSHPSCQIPV 1599
VV +D+ETTGLRA DR+I++ A V + R ++A ++PGV VPP + +TGITPE++A+ P + + S +++E V VAHNA FD FL EL R G G V C + + S ++PT +L V L + H A+ DV ERI A P I+ G WR G+A+ P + PV
Sbjct: 43 VVFLDLETTGLRAATDRIIEIGA-VRWDQYGRRTYARIVNPGV-RVPPYITRLTGITPEMVASG-----PPIEIALREFFSEFLSDEP---------VIVAHNAPFDLGFLDAELGRLGLPSPYPGP---VACTL--------------RLSRRYVPTPTGRHRLQDVAAAL-SIPLDRGHRALADVEACERIFMALWPVISRGRRMPWRRRGLAAWWPLRERPV 233
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A7S3FLR2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FLR2_9CHLO) HSP 1 Score: 79.3 bits (194), Expect = 9.700e-12 Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 1
Query: 916 RRADLSEGTHT-----VVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILS------APGINE 1551
+R+D S+ T +V +D+ETTGL A+ DRV+++A L + + +DP +P R RE+TG+T +I+AA+G F + + +++ ++A G G VAHNA+FD +FL E +RCG + +S R L R P P++F L + +H E H AM DV L R+ APG E
Sbjct: 240 QRSDPSDAHPTSSSLDLVFLDLETTGLSAERDRVVEVA---LFAPKTGLRWTRLVDPERP-IPYRAREVTGLTDDIIAASGCGNFASIAEDIVSFV------KEAVESGARGPTLVAHNARFDARFLAAEFTRCGAE------------LPESWRFYDSLELARGVLGKG--PNAPRSFGLQSLNQHFGLPEPSREHRAMDDVDVLARVFGRLVSGMAPGALE 438
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: A0A7X0LR27_9ACTN (DNA polymerase-3 subunit epsilon n=1 Tax=Streptomyces candidus TaxID=67283 RepID=A0A7X0LR27_9ACTN) HSP 1 Score: 77.0 bits (188), Expect = 7.390e-11 Identity = 74/205 (36.10%), Postives = 97/205 (47.32%), Query Frame = 1
Query: 925 DLSEGTHTVVVVDVETTGLRAKEDRVIQLAAKVLGSENPR-HSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERILSA 1536
DL + H +VDVET+GL A+ DRV+ +A LG + + F+ ++PG P RV +I G+TPE L +GA F QV AA L G V VAHNAQFD++FL E +R G S + R L SL RQ PT + +LG + H YG AH+A+ D L IL A
Sbjct: 16 DLPDYLHEWALVDVETSGLTARRDRVLSVAVITLGPDGEQTDEFSTLLNPGCD--PGRV-DIHGLTPERL--SGAPTFNQVAERIAAMLQ--------------GRVMVAHNAQFDYEFLAHEFARAGLS-------------LPVARRLCTLSLNRQ----LDPPTT--DLRLGTLSTH-YGLPQLRAHDALDDTRTLVGILRA 181
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Match: UPI00195FAF72 (exonuclease domain-containing protein n=1 Tax=Anaerotignum lactatifermentans TaxID=160404 RepID=UPI00195FAF72) HSP 1 Score: 75.5 bits (184), Expect = 1.660e-10 Identity = 63/194 (32.47%), Postives = 90/194 (46.39%), Query Frame = 1
Query: 949 VVVVDVETTGLRAKEDRVIQLAAKVLGSENPRHSFAEYIDPGVVGVPPRVREITGITPEILAANGARPFPQVWPEFAAWLSGVVAEEQAEGRGEGGVVFVAHNAQFDHKFLKEELSRCGFSRFMMGQDMGVVCIVDSLRCLKENSLWRQKASDFHMPTRPKNFKLGGVFEHLYGYEMPDAHNAMGDVVGLERIL 1530
V+ DVETTGL AK +R+I++ A + + ++ +D GV VPP V I IT E+L F V+PEF A+L + EG + AHNA+FD FL E L R G+ D + C VD+L ++ R KL V ++ +G E AH+A+ D +IL
Sbjct: 60 VIAFDVETTGLSAKSNRIIEIGAVLFENGEESKRYSTLVDAGV-NVPPTVTAINHITNEMLLKAPREKF--VYPEFLAFLGDAL---------EGKTMLCAHNARFDMDFLSETLMRLGY-------DATISC-VDTLALSRKMLKLRSN-------------KLNTVAQY-FGIENEQAHHAVADAEVCGKIL 219 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig114.929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig114.929.1 >prot_E-siliculosus-1a_F_contig114.929.1 ID=prot_E-siliculosus-1a_F_contig114.929.1|Name=mRNA_E-siliculosus-1a_F_contig114.929.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=341bp MMEDQDEEDEYLSGFSFAPPPPPPPPTPPPRLQPAGRQQQQHERRSSGGVback to top mRNA from alignment at E-siliculosus-1a_F_contig114:80874..85907- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig114.929.1 ID=mRNA_E-siliculosus-1a_F_contig114.929.1|Name=mRNA_E-siliculosus-1a_F_contig114.929.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:80874..85907- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig114:80874..85907- >mRNA_E-siliculosus-1a_F_contig114.929.1 ID=mRNA_E-siliculosus-1a_F_contig114.929.1|Name=mRNA_E-siliculosus-1a_F_contig114.929.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2046bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:80874..85907- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |