mRNA_E-siliculosus-1a_F_contig114.927.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig114.927.1
Unique NamemRNA_E-siliculosus-1a_F_contig114.927.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig114.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig114contigE-siliculosus-1a_F_contig114:70028..70624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size471
Model size599
Exons1
Ec32 orthologEc-16_001310.2
Ec32 ortholog descriptionYos1-like
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927650.029963-CDS-E-siliculosus-1a_F_contig114:70027..704981622927650.029963-CDS-E-siliculosus-1a_F_contig114:70027..70498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 70028..70498 +
1696318624.908278-CDS-E-siliculosus-1a_F_contig114:70027..704981696318624.908278-CDS-E-siliculosus-1a_F_contig114:70027..70498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 70028..70498 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927650.0795393-UTR-E-siliculosus-1a_F_contig114:70498..706241622927650.0795393-UTR-E-siliculosus-1a_F_contig114:70498..70624Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 70499..70624 +
1696318624.9204602-UTR-E-siliculosus-1a_F_contig114:70498..706241696318624.9204602-UTR-E-siliculosus-1a_F_contig114:70498..70624Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 70499..70624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig114.927.1prot_E-siliculosus-1a_F_contig114.927.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig114 70028..70498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig114.927.1

>prot_E-siliculosus-1a_F_contig114.927.1 ID=prot_E-siliculosus-1a_F_contig114.927.1|Name=mRNA_E-siliculosus-1a_F_contig114.927.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=157bp
CGVALLDCNVRWKYATFHYRRRDASGASCCCRLSPSFGENVNSFVFAVQR
PLLRFSCAPGPERARAYPRQIGAWRKRERARECRVEGAKSSRLSVLPVHA
LSATPFALSQSTALSANVELGTTRYCPYLHIQFSPRWREHSRVYFLVDGT
SHTHAL*
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mRNA from alignment at E-siliculosus-1a_F_contig114:70028..70624+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig114.927.1 ID=mRNA_E-siliculosus-1a_F_contig114.927.1|Name=mRNA_E-siliculosus-1a_F_contig114.927.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=597bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:70028..70624+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGGTGTAGCCTTGCTTGACTGTAACGTGCGATGGAAATACGCGACGTT
TCATTATCGTCGGCGTGATGCGAGTGGCGCGTCTTGTTGTTGTAGGCTTT
CTCCAAGTTTTGGGGAAAATGTAAACAGTTTTGTGTTTGCCGTGCAACGA
CCGTTACTCCGTTTTTCCTGTGCCCCAGGGCCAGAGCGCGCTCGAGCTTA
CCCACGACAAATCGGGGCGTGGCGGAAACGAGAGAGGGCCCGGGAGTGTA
GGGTAGAGGGGGCCAAATCCTCTCGCCTTTCCGTGTTACCTGTGCATGCT
TTGTCTGCGACGCCGTTTGCTCTCTCCCAGAGCACAGCGTTGAGCGCGAA
CGTCGAACTAGGCACGACGCGTTATTGCCCCTACTTGCATATTCAGTTCT
CGCCAAGGTGGAGGGAGCACTCCCGTGTGTACTTTCTTGTTGATGGCACC
TCCCATACACACGCACTCTAACAATCTATAAAATGTGTTTTTGCCACCTA
TTTGGGTGTGTGCCCTTCGCCCCCGCTGCTCCCATTGCATGGTGGACCTC
AAGTTTTGTTGCATTGCACGTTGCGTACTATTCGTTACTCTTCCCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig114:70028..70624+

>mRNA_E-siliculosus-1a_F_contig114.927.1 ID=mRNA_E-siliculosus-1a_F_contig114.927.1|Name=mRNA_E-siliculosus-1a_F_contig114.927.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=942bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:70028..70624+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGGTGTAGCCTTGCTTGACTGTAACGTGCGATGGAAATACGCGACGTT
TCATTATCGTCGGCGTGATGCGAGTGGCGCGTCTTGTTGTTGTAGGCTTT
CTCCAAGTTTTGGGGAAAATGTAAACAGTTTTGTGTTTGCCGTGCAACGA
CCGTTACTCCGTTTTTCCTGTGCCCCAGGGCCAGAGCGCGCTCGAGCTTA
CCCACGACAAATCGGGGCGTGGCGGAAACGAGAGAGGGCCCGGGAGTGTA
GGGTAGAGGGGGCCAAATCCTCTCGCCTTTCCGTGTTACCTGTGCATGCT
TTGTCTGCGACGCCGTTTGCTCTCTCCCAGAGCACAGCGTTGAGCGCGAA
CGTCGAACTAGGCACGACGCGTTATTGCCCCTACTTGCATATTCAGTTCT
CGCCAAGGTGGAGGGAGCACTCCCGTGTGTACTTTCTTGTTGATGGCACC
TCCCATACACACGCACTCTAATGTGGTGTAGCCTTGCTTGACTGTAACGT
GCGATGGAAATACGCGACGTTTCATTATCGTCGGCGTGATGCGAGTGGCG
CGTCTTGTTGTTGTAGGCTTTCTCCAAGTTTTGGGGAAAATGTAAACAGT
TTTGTGTTTGCCGTGCAACGACCGTTACTCCGTTTTTCCTGTGCCCCAGG
GCCAGAGCGCGCTCGAGCTTACCCACGACAAATCGGGGCGTGGCGGAAAC
GAGAGAGGGCCCGGGAGTGTAGGGTAGAGGGGGCCAAATCCTCTCGCCTT
TCCGTGTTACCTGTGCATGCTTTGTCTGCGACGCCGTTTGCTCTCTCCCA
GAGCACAGCGTTGAGCGCGAACGTCGAACTAGGCACGACGCGTTATTGCC
CCTACTTGCATATTCAGTTCTCGCCAAGGTGGAGGGAGCACTCCCGTGTG
TACTTTCTTGTTGATGGCACCTCCCATACACACGCACTCTAA
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