mRNA_E-siliculosus-1a_F_contig114.926.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig114.926.1
Unique NamemRNA_E-siliculosus-1a_F_contig114.926.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.300e-45
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:   79 MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 318
            MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHS SASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP
Sbjct:    1 MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 80
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.360e-19
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  100 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            LW LFK GLL TNAV ILHK+RFLR     E D +  +S +KNQ +GLI AVAYLRGPLI +N LTC   ML
Sbjct:    4 LWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEML 75
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 76.3 bits (186), Expect = 1.590e-15
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  100 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +W L+K+GLL TN V +LH++RFLRKY LD V   A  ++++NQVVGL+ AV YL+ PLI LN +T VI +L
Sbjct:    5 IWSLYKSGLLFTNGVAVLHRKRFLRKYGLD-VAEVADTTSIRNQVVGLLNAVQYLKVPLIALNIVTVVIELL 75
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: A0A067C849_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C849_SAPPC)

HSP 1 Score: 70.5 bits (171), Expect = 2.850e-13
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:  100 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASAS-AMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +WKL  + LL+ NA+ ILH++RFLR+Y  D+++ S+  S +MKNQVVG + AV YLR PL+V+N +   + +L
Sbjct:    4 IWKLIMSSLLSVNALAILHEKRFLRRYGYDQLEASSGGSPSMKNQVVGFLVAVQYLRMPLVVINIVAIFLELL 76
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: A0A2D4BY06_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY06_PYTIN)

HSP 1 Score: 70.1 bits (170), Expect = 3.820e-13
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   97 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +LW  F + LL TNAV ILH++RFLRKY  D+VD S   + ++NQ+VG + AV YLR PLIV+N+L  ++ ++
Sbjct:    3 VLWGFFLSSLLLTNAVCILHEKRFLRKYGWDKVDPSQGMT-IRNQIVGFLVAVQYLRVPLIVVNALMILLQLV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: A0A8K1FQA8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQA8_PYTOL)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   97 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +LW  F + LL TNAV ILH++RFLR Y  D++D S+    +KNQVVG + AV YLR PLI++N+   ++ ++
Sbjct:    3 VLWDFFLSSLLLTNAVCILHEKRFLRPYGWDKID-SSQGMTIKNQVVGFLVAVQYLRVPLIIVNAFMILLELV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: A0A3F2RI45_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RI45_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.030e-12
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   97 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +LW  F   LL TNAV ILH++RFLR +  D+VD S+    +KNQ+VG + AV YLR PL+V+N+L  ++ ++
Sbjct:    3 VLWNFFLTSLLLTNAVCILHEKRFLRSHGWDKVD-SSQGMTIKNQIVGFLIAVQYLRFPLMVINTLMILLELV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: A0A0P1A8P8_PLAHL (Immediate early response 3-interacting protein 1-like n=12 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A8P8_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 5.270e-10
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   97 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +LW      LL TNAV ILH++RFLR +   +VD S+    +KNQ+VG + AV YLR PL+++N+L  ++ ++
Sbjct:    3 VLWNFVLTSLLLTNAVCILHEKRFLRSHGWHKVD-SSQGMTIKNQIVGFLIAVQYLRFPLMIINTLMILLELV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: K3WSH3_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSH3_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 7.430e-10
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   97 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +LW      LL TNAV ILH++RFL+ Y   +V+ S   + +KNQVVG + AV YLR PLIV+N+   V+ ++
Sbjct:    3 VLWNFVLTSLLLTNAVCILHEKRFLKPYGWHKVEASEGMT-IKNQVVGFLVAVQYLRVPLIVINAFMIVLELV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Match: G4ZTT8_PHYSP (AP-3 complex subunit delta n=21 Tax=Phytophthora TaxID=4783 RepID=G4ZTT8_PHYSP)

HSP 1 Score: 62.8 bits (151), Expect = 1.440e-8
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   97 LLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 315
            +LW      LL TNAV ILH++RFLR +   +VD S+    +KNQ+VG + AV YLR PL+++N+L  ++ +L
Sbjct:    3 VLWNFVLTSLLLTNAVCILHEKRFLRPHGWHKVD-SSQGMTIKNQIVGFLIAVQYLRFPLMIINTLMILLELL 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig114.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FPN5_ECTSI2.300e-4598.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA1.360e-1962.50Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC1.590e-1555.56Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A067C849_SAPPC2.850e-1347.95Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A2D4BY06_PYTIN3.820e-1350.68Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8K1FQA8_PYTOL1.520e-1247.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RI45_9STRA3.030e-1247.95Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A0P1A8P8_PLAHL5.270e-1043.84Immediate early response 3-interacting protein 1-l... [more]
K3WSH3_GLOUD7.430e-1046.58Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
G4ZTT8_PHYSP1.440e-845.21AP-3 complex subunit delta n=21 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig114contigE-siliculosus-1a_F_contig114:68577..70012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size243
Model size457
Exons2
Ec32 orthologEc-16_001310.1
Ec32 ortholog descriptionYos1-like
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2E2PC@1,2S9WB@2759
EggNOG free text desc.Yos1-like
Seed eggNOG ortholog112098.XP_008608353.1
Seed ortholog evalue1.2e-09
Seed ortholog score68.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig114.926.1prot_E-siliculosus-1a_F_contig114.926.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig114 68655..69876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927651.8217084-UTR-E-siliculosus-1a_F_contig114:68576..686541622927651.8217084-UTR-E-siliculosus-1a_F_contig114:68576..68654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 68577..68654 +
1696318625.9216218-UTR-E-siliculosus-1a_F_contig114:68576..686541696318625.9216218-UTR-E-siliculosus-1a_F_contig114:68576..68654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 68577..68654 +
1622927651.8632662-UTR-E-siliculosus-1a_F_contig114:69876..700121622927651.8632662-UTR-E-siliculosus-1a_F_contig114:69876..70012Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 69877..70012 +
1696318625.949858-UTR-E-siliculosus-1a_F_contig114:69876..700121696318625.949858-UTR-E-siliculosus-1a_F_contig114:69876..70012Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 69877..70012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927651.8363383-CDS-E-siliculosus-1a_F_contig114:68654..687541622927651.8363383-CDS-E-siliculosus-1a_F_contig114:68654..68754Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 68655..68754 +
1696318625.9318464-CDS-E-siliculosus-1a_F_contig114:68654..687541696318625.9318464-CDS-E-siliculosus-1a_F_contig114:68654..68754Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 68655..68754 +
1622927651.8486302-CDS-E-siliculosus-1a_F_contig114:69733..698761622927651.8486302-CDS-E-siliculosus-1a_F_contig114:69733..69876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 69734..69876 +
1696318625.940852-CDS-E-siliculosus-1a_F_contig114:69733..698761696318625.940852-CDS-E-siliculosus-1a_F_contig114:69733..69876Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 69734..69876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig114.926.1

>prot_E-siliculosus-1a_F_contig114.926.1 ID=prot_E-siliculosus-1a_F_contig114.926.1|Name=mRNA_E-siliculosus-1a_F_contig114.926.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp
MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSASASAMKN
QVVGLIAAVAYLRGPLIVLNSLTCVIAMLP*
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mRNA from alignment at E-siliculosus-1a_F_contig114:68577..70012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig114.926.1 ID=mRNA_E-siliculosus-1a_F_contig114.926.1|Name=mRNA_E-siliculosus-1a_F_contig114.926.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1436bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:68577..70012+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATCCACCCTTGCGCTCCGCCTACAGGAGCGAGGGCGACAGAAGAGCACGG
AGGAAGTGGAGAGGGCGGTGCGTGCTCAATGTTGTTTGGCTTTAACCTGC
TGTGGAAGCTCTTCAAGGCTGGGCTGCTGGCCACCAATGCCGTAACAATT
CTCCACAAGCAGCGCTTCTTGAGAAAATGTAAGCGAGGCAGGTTACTCCG
CGTCTCTCCTGCTGTGTTGCATATGGAACGATGGAATCAGTGGGGTGTGG
AGTCCACACAGAGCTTAACAAAGCACGACTTTGCGATAACTAGAGAGAAA
GGAACCCACCTACCCGATAGGAAGCAGGCTACATCATCCTAAAATAGCCT
GGTGGGTACGGAAGGCCAGTGGACGTCGAACACGGCAGTGGATGCAACAA
CTGCATCTCAAAGTCGCTTGTACAACGACGATAGACTACAGCAGTGCTGC
TGGTGTGTGTGCAGAGGAGAGTAGAGTGTAGAGGTCGACGGGACGATGTC
TCTTTTTTTTTTTTTGCTTTGAGCACCGTGCTGAGCTCTCTGACCTGCAT
CTTTTCAGGTTCTATGACGTTGTCGTCTTTTATCATCGTCGATTTTGGAC
AATTTGGACTTCGAAAGTTGAACTGCAGCACAGCAGGGAAGGTTATTATG
TAGTTTAGACCCTCGGCGTCCTCTTGGACAATCAATCCGCTACAGCTGCA
GTATCTAGGAGGCTTGTGTACGTTGAGACCCGGGTTGGTGAGAAACGCGC
AGCACGCTGGCCTACATGACGAGCTACCCTTTTGAACCGCGCCACCCTGT
TGGAACCCGCAACACCGAGAGTTTTATCTGTGTCTGCTCCCGCAGCTTCT
CGCTGCTCCCTCGCGTAGCCCTTGAGCGTCCGCACCCCCCCACCCCCCCC
GGGGCACTCTCCCTCAACCTTCATATTTTGCCGCGTTTGCATAGCCTTAG
TAAGCAACAAGAGACACGTTTCTCTCCTCTTTCTCATCGTTTTTTACGCC
CATGTGCGTGCGGTTGCACCTCGCCAATGCAATAACGTTGGCGAGGATAT
TTCACTTGGTTTTAGTAGGGGTTACGGGGTTGTGTGAGGGCTACAGTAGG
TCAGTCCTTCGCGCGACAGACACGAACCCCCCGCGCTCAACGAACGTGAC
CTCGCAGATCGGCTCGACGAGGTGGACCACTCGGCGTCGGCCTCGGCGAT
GAAGAACCAGGTGGTGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCC
CGCTGATCGTCCTCAACTCGCTCACCTGCGTCATCGCGATGCTCCCATGA
CATACATCACCGTCGCAAGCCGAAAAAGGGGTTCCGTAGTGTATTGTCGA
CTCCCAACGTGCGTTATTGCATACTACGTCGGTCGTTCATGGTGGCAAGT
ACCATACATTTGAGGTGCTTCACATGTCAGCATGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig114:68577..70012+

>mRNA_E-siliculosus-1a_F_contig114.926.1 ID=mRNA_E-siliculosus-1a_F_contig114.926.1|Name=mRNA_E-siliculosus-1a_F_contig114.926.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:68577..70012+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTGTTTGGCTTTAACCTGCTGTGGAAGCTCTTCAAGGCTGGGCTGCT
GGCCACCAATGCCGTAACAATTCTCCACAAGCAGCGCTTCTTGAGAAAAT
ATGTTGTTTGGCTTTAACCTGCTGTGGAAGCTCTTCAAGGCTGGGCTGCT
GGCCACCAATGCCGTAACAATTCTCCACAAGCAGCGCTTCTTGAGAAAAT
ATCGGCTCGACGAGGTGGACCACTCGGCGTCGGCCTCGGCGATGAAGAAC
CAGGTGGTGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCCCGCTGAT
CGTCCTCAACTCGCTCACCTGCGTCATCGCGATGCTCCCATGAATCGGCT
CGACGAGGTGGACCACTCGGCGTCGGCCTCGGCGATGAAGAACCAGGTGG
TGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCCCGCTGATCGTCCTC
AACTCGCTCACCTGCGTCATCGCGATGCTCCCATGA
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