mRNA_E-siliculosus-1a_F_contig114.924.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig114.924.1
Unique NamemRNA_E-siliculosus-1a_F_contig114.924.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D7FPN3_ECTSI (Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN3_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 9.540e-114
Identity = 385/440 (87.50%), Postives = 388/440 (88.18%), Query Frame = 3 
Query:  156 MPRSSRYEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDETIVDNRGRTACQRLPAIDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLQTADMLDPTAAGNQPQERDEGLVGLAARLMKLADEDVFRKVVGLL 1475
            MPRSSRYEDRA ILRGSEDT FRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  DETIVDNRGRTA QRLPAIDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLQTA +LDPTAAGNQPQ+RDEGLVGLAARL+KLADEDVFRKVVGLL
Sbjct:    1 MPRSSRYEDRANILRGSEDTTFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQDXXXXXXXXXXXXXXXXXXXXXXXXPNDEVVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFRLANATTVLHVAAEYNEAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------DETIVDNRGRTAYQRLPAIDNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLQTAKILDPTAAGNQPQQRDEGLVGLAARLVKLADEDVFRKVVGLL 422
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.060e-32
Identity = 77/137 (56.20%), Postives = 86/137 (62.77%), Query Frame = 3 
Query:  174 YEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 584
            YE+RA+IL+   DTIF+LVCDRATPEQWAEWLRAPLEHAA T + DLV KLL AGAN   GW GC GKTLLHAAAEGGN  VI +L RAGA  D    +     TP                    ADV++LD   D
Sbjct:    4 YEERASILQDLGDTIFKLVCDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTLLHAAAEGGNVHVITSLRRAGAGRDMKAKSLDTGHTPLDLAVIGGKEAAAKALIMAGADVNTLDATND 140
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.800e-31
Identity = 75/137 (54.74%), Postives = 84/137 (61.31%), Query Frame = 3 
Query:  174 YEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 584
            YE+R++IL+   DT F+LV DRATP+QWAEWLRAPLEHAAAT + DLV KLL AGANG  GW GC GKTLLHAAAEGGN QVI  L  AGA  D    A     TP                    A+V+ LD   D
Sbjct:   46 YEERSSILQDLGDTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAKALDTGHTPLDLAVIGGKEAAAKALIMAGANVNMLDATND 182
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 6.080e-30
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 3 
Query:  177 EDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKD 461
            EDRA  L  +   IF+L+CDRAT EQWAEWLRAPLEHAA TA+ DLV+KLL AGA+GS GW GCD KTLLHAAAEGGN +V+ AL+RAGA  D +
Sbjct:    9 EDRAKTLGDAAGIIFKLMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVVTALVRAGAGEDME 103
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: A0A6H5JXY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.950e-27
Identity = 67/99 (67.68%), Postives = 75/99 (75.76%), Query Frame = 3 
Query:  162 RSSRYEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQ-VIMALLRAGAAGD 455
            R    EDRA IL  + D IF L+CDRAT EQWAEWLRAPLEHAA TA+ DLV+KLL AGANGS G  GCD  TLLHAAAEGGN + V+ AL++AGA  D
Sbjct:    6 REDDAEDRAKILGDAADMIFELMCDRATSEQWAEWLRAPLEHAAGTANQDLVEKLLKAGANGSAGRRGCDDNTLLHAAAEGGNEEEVVTALIKAGAEED 104
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D7FQP2_ECTSI (Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 7.140e-27
Identity = 67/136 (49.26%), Postives = 80/136 (58.82%), Query Frame = 3 
Query:  177 EDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTDQD 584
            EDR  IL  + D IF+L+CDRAT EQW EWLRAPLEHAA TA+ DLV+KLL AGA+GS GW GCD  TLLHAA       V+ AL+RAGA  D +        TP                    ADV+++D + D
Sbjct:    9 EDRVKILGDAADMIFKLMCDRATSEQWTEWLRAPLEHAAGTANRDLVEKLLKAGADGSAGWRGCDDNTLLHAAXXXXXXXVVTALIRAGAGEDMEAKTPGTGGTPLHVAVMRGQEAAARVLVLAGADVNAVDHNTD 144
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D7G2A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.260e-26
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:  183 RATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGC-DGKTLLHAAAEGGNAQVI 422
            RA I++   DTIF+LVCDR T EQW+EWLRAPLEHAAATA+++LV KLL AGANG   W GC D KTLLHAAAEGG+A V+
Sbjct:    2 RARIMQDLGDTIFKLVCDRVTAEQWSEWLRAPLEHAAATANYELVSKLLRAGANGGASWRGCHDDKTLLHAAAEGGDALVV 82
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D7FM65_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 9.170e-26
Identity = 66/137 (48.18%), Postives = 78/137 (56.93%), Query Frame = 3 
Query:  168 SRYEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTPXXXXXXXXXXXXXXXXXXXXADVHSLDTD 578
            S ++DR + L G+ D I  LVCD ATP QW +WLR PLEHAA T +  LV+KLL  GAN S GW GCDG+TL+HA AEGG+ QVI  L RAGA    +  A     TP                    ADV+ LD D
Sbjct:    2 STHQDRKSTLHGTGDMILDLVCDLATPRQWTKWLRVPLEHAAGTGNAALVEKLLKVGANASAGWRGCDGRTLMHAGAEGGSEQVISMLTRAGAGKYINDQAPLSGLTPLHLAVSGGKLAATKVLMLAGADVNRLDAD 138
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D8LH19_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH19_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.610e-22
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 3 
Query:  168 SRYEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERTP 491
            + +++R   L G+E+ +F+LV   ATP QWAEWLRAPLEHA A  +  L   LL AGA+G  GW GCDG++LL  A +GGN++ + ALL AG+ GD +       R+P
Sbjct:    2 ANFDERTAALGGTEEQLFKLVSRHATPAQWAEWLRAPLEHAVAEGNQHLASTLLRAGADGGAGWKGCDGRSLLDVAVQGGNSKTVSALLEAGSLGDVNAVTGSDRRSP 109
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.680e-22
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  177 EDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATADHDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGDKDTAASYKERT 488
            EDR T L+G E  +F+LV ++AT  QW+EWLRAPLEHA A  D DL   LL AGANG +GW GC+ +TLL AAAEGGN +V+  LL  G   + D A+  ++RT
Sbjct:    5 EDR-TALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSGWEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRT 107
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig114.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN3_ECTSI9.540e-11487.50Similar to ankyrin 2,3/unc44, partial n=2 Tax=Ecto... [more]
D7G2A3_ECTSI3.060e-3256.20Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LHQ7_ECTSI1.800e-3154.74F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
D7FQP1_ECTSI6.080e-3069.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXY4_9PHAE3.950e-2767.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQP2_ECTSI7.140e-2749.26Pc16g06120 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G2A9_ECTSI1.260e-2670.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM65_ECTSI9.170e-2648.18Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
D8LH19_ECTSI1.610e-2248.15Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D8LDP2_ECTSI3.680e-2254.81Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig114contigE-siliculosus-1a_F_contig114:50209..53874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1323
Model size2823
Exons2
Ec32 orthologEc-16_001330.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
KEGG koko:K21440
Seed eggNOG ortholog2880.D7FPN3
Seed ortholog evalue3.8e-97
Seed ortholog score362.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig114.924.1prot_E-siliculosus-1a_F_contig114.924.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig114 52397..53719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927651.44073-UTR-E-siliculosus-1a_F_contig114:50208..515431622927651.44073-UTR-E-siliculosus-1a_F_contig114:50208..51543Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 50209..51543 -
1696318625.7012506-UTR-E-siliculosus-1a_F_contig114:50208..515431696318625.7012506-UTR-E-siliculosus-1a_F_contig114:50208..51543Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 50209..51543 -
1622927651.453501-UTR-E-siliculosus-1a_F_contig114:52386..523961622927651.453501-UTR-E-siliculosus-1a_F_contig114:52386..52396Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 52387..52396 -
1696318625.7183099-UTR-E-siliculosus-1a_F_contig114:52386..523961696318625.7183099-UTR-E-siliculosus-1a_F_contig114:52386..52396Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 52387..52396 -
1622927651.4733658-UTR-E-siliculosus-1a_F_contig114:53719..538741622927651.4733658-UTR-E-siliculosus-1a_F_contig114:53719..53874Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 53720..53874 -
1696318625.7474165-UTR-E-siliculosus-1a_F_contig114:53719..538741696318625.7474165-UTR-E-siliculosus-1a_F_contig114:53719..53874Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig114 53720..53874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927651.4640577-CDS-E-siliculosus-1a_F_contig114:52396..537191622927651.4640577-CDS-E-siliculosus-1a_F_contig114:52396..53719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 52397..53719 -
1696318625.7350123-CDS-E-siliculosus-1a_F_contig114:52396..537191696318625.7350123-CDS-E-siliculosus-1a_F_contig114:52396..53719Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig114 52397..53719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig114.924.1

>prot_E-siliculosus-1a_F_contig114.924.1 ID=prot_E-siliculosus-1a_F_contig114.924.1|Name=mRNA_E-siliculosus-1a_F_contig114.924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=441bp
MPRSSRYEDRATILRGSEDTIFRLVCDRATPEQWAEWLRAPLEHAAATAD
HDLVKKLLNAGANGSTGWVGCDGKTLLHAAAEGGNAQVIMALLRAGAAGD
KDTAASYKERTPLHVAVSGGKEAAAKALMMAGADVHSLDTDQDTPLHLAI
EGGYVELAEDLLLSGADPNAKGSRDSYPIQLAAGRGQDEVVSALVQKGAS
LNCLDAVGKTPLYLAVVEDRVSTVKLLLAAGADASFRLANATTVLHVAAE
YNEAGAIGTLVEAGADIEARSKSGQTPLWFSAFYGSYTAMLALLKLGAGV
NSVGTYGSTPLHAACKRGHADVARLLLRWGADETIVDNRGRTACQRLPAI
DNVVEEYRPGIERLSKVLARAPQDRAWCRRGFLVMCRARPDKVRLQTADM
LDPTAAGNQPQERDEGLVGLAARLMKLADEDVFRKVVGLL*
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mRNA from alignment at E-siliculosus-1a_F_contig114:50209..53874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig114.924.1 ID=mRNA_E-siliculosus-1a_F_contig114.924.1|Name=mRNA_E-siliculosus-1a_F_contig114.924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:50209..53874- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGAGGAGGAAGACAGAAGCGAAACGTGCGTGCCTTCTCTCCACCCCC
CTCTCTTTCATTCCACGCGTTGTGTCTCTCCCATATATTCCGTGTGACTG
CTATTCATTTTGATACTACAACACTTCGCTGGGCGGAGTTACCGGGACTG
AAGTCATGCCGCGTTCCTCGCGTTACGAAGACCGTGCCACCATCCTGCGG
GGCTCCGAAGACACGATCTTCAGACTGGTGTGCGATAGGGCCACGCCAGA
GCAATGGGCGGAGTGGCTGAGGGCTCCGTTAGAGCACGCGGCGGCCACAG
CGGACCATGACCTGGTGAAGAAGCTGCTGAACGCCGGAGCGAACGGGAGC
ACGGGTTGGGTGGGTTGCGATGGCAAGACTCTGTTGCATGCAGCCGCGGA
GGGCGGCAACGCGCAGGTGATCATGGCGCTGCTGAGGGCAGGGGCCGCAG
GGGACAAGGACACCGCAGCCTCGTACAAAGAGCGAACCCCGCTTCATGTT
GCGGTTTCTGGCGGGAAGGAGGCTGCTGCGAAGGCGCTCATGATGGCCGG
AGCGGATGTACACTCCCTCGACACCGACCAGGACACTCCGCTTCACTTGG
CCATCGAAGGCGGCTACGTAGAACTTGCGGAGGACCTGCTGCTCAGCGGA
GCTGACCCCAACGCCAAAGGTTCGAGAGACTCCTACCCTATTCAGCTCGC
TGCTGGCCGTGGCCAGGATGAGGTGGTCTCGGCCTTGGTGCAAAAGGGAG
CGAGCCTGAACTGCCTCGATGCGGTAGGAAAGACCCCCCTGTATCTGGCG
GTTGTCGAAGACCGCGTGTCCACAGTGAAACTTCTCCTGGCTGCGGGTGC
CGACGCAAGCTTTCGCCTGGCCAATGCGACGACCGTCCTACACGTAGCCG
CGGAGTATAACGAAGCCGGTGCCATCGGAACTCTAGTGGAGGCTGGGGCT
GATATCGAAGCCCGGAGCAAAAGCGGACAGACCCCGCTGTGGTTTTCGGC
GTTCTACGGCTCGTACACCGCCATGCTCGCGCTGCTGAAACTCGGAGCGG
GCGTGAACTCGGTAGGCACCTACGGATCGACACCCTTGCACGCGGCGTGC
AAGAGAGGCCACGCAGACGTTGCGCGCCTGCTGTTGAGATGGGGCGCAGA
CGAGACCATCGTCGACAACCGTGGCCGAACTGCCTGCCAGAGGTTGCCAG
CGATCGACAACGTGGTCGAAGAATACCGCCCGGGAATCGAGCGTCTGTCC
AAGGTGCTGGCGCGCGCCCCGCAAGATAGAGCCTGGTGCCGCCGGGGCTT
CCTCGTCATGTGCCGTGCCCGTCCAGACAAGGTGCGGCTACAAACAGCAG
ATATGTTAGATCCGACAGCGGCTGGCAACCAGCCCCAGGAACGAGACGAG
GGACTCGTTGGTTTGGCGGCGCGGCTGATGAAGCTAGCCGACGAGGACGT
GTTCCGCAAGGTCGTGGGACTGCTGTAGAGCGAGCAAGGTCAGTCCTGTG
CCGGTGTGTGTTTGCACCCCATGCTACATGTAAGGAAGTTTCAGTTTCCT
TTTTCAGGCGTCAGCCTCTGCTGCTGTTTGTAGGCTACCCCTCTCACTCG
TTTTGAAGACGTGCGGTCATTTTCAAGTGCTGGACAGCGTTGTCGAGTGT
ATTTGCGCCTTTAGGGAAGTGCAGTGCTGCTGTGTCATTTCGTTGTGGTT
GGCCACTGTACTGCTGTAGCCGTGCCTCAACACGTCCGTCGCCGTTAGCC
GACTAAGCTCTGCCAAACAGACAATGCGTGTGGATGTGCCACCGGACTCG
AGAAAAGCATGCACGGGTGTACGTATCTATCATATCGCGATTGCGAGAAG
CGTCCACCGATAGAGGTTGCATTTATCAAGTTCACCATCTATTCTACACG
TGTCTCGTCAAATCCGTATAGCATGCCCACACGCATCGCAACGATGGCAC
TATGTATTCCTGCATCGATAAACTGGAAGCAATGACAGGCCACCAGGCAC
TCCACAGCCCAGCTCATGCCGTTCGATATATTTCCTGTCAAGGTCGTGTC
ATGGAGACGGTGTGGCATATTCCTAACCGCCTCCGGGCTTGTTGCTATGT
GCTGGTATCGTATTTCGAACTCGTTACGGCCGAGCTGGGCTTTTCCTCCT
CGGTATCTAGCGGTGCAGTGCTGACTGCACGTGGATGACGCTGCGGGAAT
GATCTTGGAGATAGGGTATGTGACTACTAGCTTGCGTTCAGCCCGCGCTG
CTGGCACCCAACCGGATCGATTCAATAGGTTCCCCCTACTGCCGCCCGTC
CCGTCTGTCTTTGCCACTCTCGCATTGACAGACGATCAGCTAGTGCGTCG
GCGGCGTTCTTGGTTGCTGGAGAGCATGGCAATCGTGGCTGACCGGGCGG
GAGAGTCACACTTTTTTGTTCAGCAGTATTCGGAAGCAGGCACAACGTAC
CGATGCGCCCGTCAGTTAATGTTCCTGACAAATTATCGCGAGGCCAGTGC
GAACGCGCGCTCGAAATGTGTGTTTTTGTAGTGTATCTTACAAGGGAGAG
AGAACGTGCTGTAGTGCTGCTTACGAGGTTGGGGTATAGCACGGGCCTAC
AGATCGGATACGTGGGCGTTGGGGAGTGACCGAATCACCGACGTGGTGTG
CAAATAGGAATAAACGAGAGCGAAGGACTCGTGGTGGTTCGCAGGCACAC
TTAATTGTTTTCTTGTAAAATTTTCGTCGTTGCTCTAACCACTGAAATGT
ACATAATTAGACCCTTGTACGTATTGCCGCCAGCAAAGCAACTTTTTTTT
TAATTCTTCCCCCGCCCCCTGCTAGAAGTACATATTTTCTCATGTTCGAT
GCCCGGTTTGTTTATTGATCGTTCTTTTGTTGGTGTAGATAATGGAAAGG
TTGTAACCGTGTAGTTGGGTAGAGTGTGAGAATATTTCGAAGCCCGCTGA
CAAGGACGGGCGTACATCTTGGTTTGCCCTGTGTTTTGTATCAGTTATTT
AGTTCGACTGTTTGCATTTTTATCGGTTCAGAGAAGCGTGGGCTTCGTAA
ATCCTTGCGTGTGAGTTAATACCATGGGCGTAGGCTGCTGGTTTGTCCAC
TCTCTTCTTCAGTTTGTCGAAACGTAGGTGTTGTGGATGTCTTGCAAACA
CTTTGTACACATGATTGGGCGGTGAGGCTCTTGCTCCCTTGTACAAGATG
GATTGAAGCTGTTTTGGGTCTGTCGATCCCGGACATTCGGTGGTGTGTGC
GTGATTTTTCGCTACCCACAGATGATCTGGGTTGTAGGCGTTGCCTTCGG
TTGCTTGTATCTGATCTGCCCGACAGCAGGTATTGTTGTGCCCAGCAAGC
CCCTGCGATTTATTCATGTAGGTGGAACGTGTTCCTCCCTGTAGACGATG
GTGTTGGTGGCTAGCTCTCGTTGGGTCTGTCGATAATAGTTTTTTTTTAT
CCCGTCCAGAAATGCCGAGGTGTATCATGTAGGCGTGAGCGATGTGTTCG
CCCTTTTTAAGAGGATGGAGTTATACTGCTCTATCGCTCTCTTGATATCC
AGTCGTCGATTACGGGCTGAGTTGTTGCGCCTATTGAGTACGTACAAGGG
TTCAGTGTGGGGTGTGGGGGGTGCGGTTATTCCCCTGCCACAAATGACGA
CATGTTACAATCCGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig114:50209..53874-

>mRNA_E-siliculosus-1a_F_contig114.924.1 ID=mRNA_E-siliculosus-1a_F_contig114.924.1|Name=mRNA_E-siliculosus-1a_F_contig114.924.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2646bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig114:50209..53874- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGCGTTCCTCGCGTTACGAAGACCGTGCCACCATCCTGCGGGGCTC
CGAAGACACGATCTTCAGACTGGTGTGCGATAGGGCCACGCCAGAGCAAT
GGGCGGAGTGGCTGAGGGCTCCGTTAGAGCACGCGGCGGCCACAGCGGAC
CATGACCTGGTGAAGAAGCTGCTGAACGCCGGAGCGAACGGGAGCACGGG
TTGGGTGGGTTGCGATGGCAAGACTCTGTTGCATGCAGCCGCGGAGGGCG
GCAACGCGCAGGTGATCATGGCGCTGCTGAGGGCAGGGGCCGCAGGGGAC
AAGGACACCGCAGCCTCGTACAAAGAGCGAACCCCGCTTCATGTTGCGGT
TTCTGGCGGGAAGGAGGCTGCTGCGAAGGCGCTCATGATGGCCGGAGCGG
ATGTACACTCCCTCGACACCGACCAGGACACTCCGCTTCACTTGGCCATC
GAAGGCGGCTACGTAGAACTTGCGGAGGACCTGCTGCTCAGCGGAGCTGA
CCCCAACGCCAAAGGTTCGAGAGACTCCTACCCTATTCAGCTCGCTGCTG
GCCGTGGCCAGGATGAGGTGGTCTCGGCCTTGGTGCAAAAGGGAGCGAGC
CTGAACTGCCTCGATGCGGTAGGAAAGACCCCCCTGTATCTGGCGGTTGT
CGAAGACCGCGTGTCCACAGTGAAACTTCTCCTGGCTGCGGGTGCCGACG
CAAGCTTTCGCCTGGCCAATGCGACGACCGTCCTACACGTAGCCGCGGAG
TATAACGAAGCCGGTGCCATCGGAACTCTAGTGGAGGCTGGGGCTGATAT
CGAAGCCCGGAGCAAAAGCGGACAGACCCCGCTGTGGTTTTCGGCGTTCT
ACGGCTCGTACACCGCCATGCTCGCGCTGCTGAAACTCGGAGCGGGCGTG
AACTCGGTAGGCACCTACGGATCGACACCCTTGCACGCGGCGTGCAAGAG
AGGCCACGCAGACGTTGCGCGCCTGCTGTTGAGATGGGGCGCAGACGAGA
CCATCGTCGACAACCGTGGCCGAACTGCCTGCCAGAGGTTGCCAGCGATC
GACAACGTGGTCGAAGAATACCGCCCGGGAATCGAGCGTCTGTCCAAGGT
GCTGGCGCGCGCCCCGCAAGATAGAGCCTGGTGCCGCCGGGGCTTCCTCG
TCATGTGCCGTGCCCGTCCAGACAAGGTGCGGCTACAAACAGCAGATATG
TTAGATCCGACAGCGGCTGGCAACCAGCCCCAGGAACGAGACGAGGGACT
CGTTGGTTTGGCGGCGCGGCTGATGAAGCTAGCCGACGAGGACGTGTTCC
GCAAGGTCGTGGGACTGCTGTAGATGCCGCGTTCCTCGCGTTACGAAGAC
CGTGCCACCATCCTGCGGGGCTCCGAAGACACGATCTTCAGACTGGTGTG
CGATAGGGCCACGCCAGAGCAATGGGCGGAGTGGCTGAGGGCTCCGTTAG
AGCACGCGGCGGCCACAGCGGACCATGACCTGGTGAAGAAGCTGCTGAAC
GCCGGAGCGAACGGGAGCACGGGTTGGGTGGGTTGCGATGGCAAGACTCT
GTTGCATGCAGCCGCGGAGGGCGGCAACGCGCAGGTGATCATGGCGCTGC
TGAGGGCAGGGGCCGCAGGGGACAAGGACACCGCAGCCTCGTACAAAGAG
CGAACCCCGCTTCATGTTGCGGTTTCTGGCGGGAAGGAGGCTGCTGCGAA
GGCGCTCATGATGGCCGGAGCGGATGTACACTCCCTCGACACCGACCAGG
ACACTCCGCTTCACTTGGCCATCGAAGGCGGCTACGTAGAACTTGCGGAG
GACCTGCTGCTCAGCGGAGCTGACCCCAACGCCAAAGGTTCGAGAGACTC
CTACCCTATTCAGCTCGCTGCTGGCCGTGGCCAGGATGAGGTGGTCTCGG
CCTTGGTGCAAAAGGGAGCGAGCCTGAACTGCCTCGATGCGGTAGGAAAG
ACCCCCCTGTATCTGGCGGTTGTCGAAGACCGCGTGTCCACAGTGAAACT
TCTCCTGGCTGCGGGTGCCGACGCAAGCTTTCGCCTGGCCAATGCGACGA
CCGTCCTACACGTAGCCGCGGAGTATAACGAAGCCGGTGCCATCGGAACT
CTAGTGGAGGCTGGGGCTGATATCGAAGCCCGGAGCAAAAGCGGACAGAC
CCCGCTGTGGTTTTCGGCGTTCTACGGCTCGTACACCGCCATGCTCGCGC
TGCTGAAACTCGGAGCGGGCGTGAACTCGGTAGGCACCTACGGATCGACA
CCCTTGCACGCGGCGTGCAAGAGAGGCCACGCAGACGTTGCGCGCCTGCT
GTTGAGATGGGGCGCAGACGAGACCATCGTCGACAACCGTGGCCGAACTG
CCTGCCAGAGGTTGCCAGCGATCGACAACGTGGTCGAAGAATACCGCCCG
GGAATCGAGCGTCTGTCCAAGGTGCTGGCGCGCGCCCCGCAAGATAGAGC
CTGGTGCCGCCGGGGCTTCCTCGTCATGTGCCGTGCCCGTCCAGACAAGG
TGCGGCTACAAACAGCAGATATGTTAGATCCGACAGCGGCTGGCAACCAG
CCCCAGGAACGAGACGAGGGACTCGTTGGTTTGGCGGCGCGGCTGATGAA
GCTAGCCGACGAGGACGTGTTCCGCAAGGTCGTGGGACTGCTGTAG
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