mRNA_E-siliculosus-1a_F_contig11399.920.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11399.920.1
Unique NamemRNA_E-siliculosus-1a_F_contig11399.920.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11399.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11399contigE-siliculosus-1a_F_contig11399:1281..1801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size171
Model size173
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927649.676094-CDS-E-siliculosus-1a_F_contig11399:1280..13891622927649.676094-CDS-E-siliculosus-1a_F_contig11399:1280..1389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11399 1281..1389 -
1696318624.889385-CDS-E-siliculosus-1a_F_contig11399:1280..13891696318624.889385-CDS-E-siliculosus-1a_F_contig11399:1280..1389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11399 1281..1389 -
1622927649.689677-CDS-E-siliculosus-1a_F_contig11399:1739..18011622927649.689677-CDS-E-siliculosus-1a_F_contig11399:1739..1801Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11399 1740..1801 -
1696318624.8983648-CDS-E-siliculosus-1a_F_contig11399:1739..18011696318624.8983648-CDS-E-siliculosus-1a_F_contig11399:1739..1801Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11399 1740..1801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11399.920.1prot_E-siliculosus-1a_F_contig11399.920.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11399 1281..1801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11399.920.1

>prot_E-siliculosus-1a_F_contig11399.920.1 ID=prot_E-siliculosus-1a_F_contig11399.920.1|Name=mRNA_E-siliculosus-1a_F_contig11399.920.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
DERVPRRPARGQRGEHQQTAAWLHLVRHEELRRSGVGMTVPRPDCGMRRG
RRNDRE*
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mRNA from alignment at E-siliculosus-1a_F_contig11399:1281..1801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11399.920.1 ID=mRNA_E-siliculosus-1a_F_contig11399.920.1|Name=mRNA_E-siliculosus-1a_F_contig11399.920.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=521bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11399:1281..1801- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGAACGCGTACCACGGCGGCCAGCGCGCGGTCAACGCGGTGAGCACCA
ACAGACTGCTGCGTGGTATGTGATGATAGGCGCCAGCCCTGACCTAAATT
TGCGGTGGAACGTGTGTGCAACTCAGAATTGAGTGGTGACGCCTTTAGCC
GAAGGAAAGAGGGCCGAAGGGCTGAGCCTACCCTGATTCTGGTGCTGAAA
CACCGATGCAATCAACAGTGAAAGAACGAAGTGCACAACAGCTGTCAGCC
AGAGGTGGGTATTCATTAGTCGTATCGTAAGCAAAGTGCCGTGAGGTAGC
GTTTACCTGTGGTGGACGAACGGCTCACGTGGTTCTTGCATATGGTCGCC
TTAGAATGTGACGGCATTCCACATGTAGTGCACACGTACGACCCCTTCCC
ACTGTTTGATAGTTGGCTACACCTGGTCCGTCATGAAGAGCTACGCCGCT
CCGGTGTCGGGATGACCGTCCCGAGACCGGATTGTGGGATGCGACGCGGA
CGACGAAATGACCGAGAATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11399:1281..1801-

>mRNA_E-siliculosus-1a_F_contig11399.920.1 ID=mRNA_E-siliculosus-1a_F_contig11399.920.1|Name=mRNA_E-siliculosus-1a_F_contig11399.920.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11399:1281..1801- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGAACGCGTACCACGGCGGCCAGCGCGCGGTCAACGCGGTGAGCACCA
ACAGACTGCTGCGATGAACGCGTACCACGGCGGCCAGCGCGCGGTCAACG
CGGTGAGCACCAACAGACTGCTGCTTGGCTACACCTGGTCCGTCATGAAG
AGCTACGCCGCTCCGGTGTCGGGATGACCGTCCCGAGACCGGATTGTGGG
ATGCGACGCGGACGACGAAATGACCGAGAATAATTGGCTACACCTGGTCC
GTCATGAAGAGCTACGCCGCTCCGGTGTCGGGATGACCGTCCCGAGACCG
GATTGTGGGATGCGACGCGGACGACGAAATGACCGAGAATAA
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