mRNA_E-siliculosus-1a_F_contig1139.915.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1139.915.1
Unique NamemRNA_E-siliculosus-1a_F_contig1139.915.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1139.915.1 vs. uniprot
Match: A0A6H5K1N0_9PHAE (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1N0_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 1.200e-117
Identity = 188/219 (85.84%), Postives = 196/219 (89.50%), Query Frame = 1 
Query:    1 MIGSDAVVGSVEGVLEYDLGSKGLPVQPPLSPLEASIRPFSVDEQEITGVVFEKNENVTSLSFTRPITPEVAGKQTLLAGADTSAILLSAAGSDDSLGYHFLGRGAFNIDLACSEDQPVIEGDVXXXXXXXXXEQPGTEAGSAVPLLT*GPSTSPFTVFSVSPSSAPAPPFAAQPADGSTTSGALPRVPTAVVGFVYRFAGAAALGFATVEVFFAFAVL 657
            MIGSDAVVGS+EGVLEYDLGSKGLPVQPPLSPLEASIRP+SVDEQEITG V E++ENVTSLSFTRP  PEV+GKQ LLAGADTSAILL AAGSDDS GYHFLGRGAF+IDLACSE QPV+EG+V         EQ GTEAGSAVPLLT GPSTSPFTVFSVSPSSAPAPPF AQPA GSTTSGALPRVPTAVVGFVYRFA AAALGFA VEVFFAFAVL
Sbjct:  131 MIGSDAVVGSIEGVLEYDLGSKGLPVQPPLSPLEASIRPYSVDEQEITGAVLERDENVTSLSFTRPTIPEVSGKQALLAGADTSAILLWAAGSDDSFGYHFLGRGAFSIDLACSEGQPVVEGNVVEEDVVEGDEQLGTEAGSAVPLLTEGPSTSPFTVFSVSPSSAPAPPFTAQPAGGSTTSGALPRVPTAVVGFVYRFAAAAALGFAAVEVFFAFAVL 349
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1139.915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1N0_9PHAE1.200e-11785.84DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1139contigE-siliculosus-1a_F_contig1139:7268..8175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size447
Model size657
Exons2
Ec32 orthologEc-20_002550.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1139.915.1prot_E-siliculosus-1a_F_contig1139.915.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1139 7268..7965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927649.1598024-CDS-E-siliculosus-1a_F_contig1139:7267..73331622927649.1598024-CDS-E-siliculosus-1a_F_contig1139:7267..7333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 7268..7333 +
1696318624.5848386-CDS-E-siliculosus-1a_F_contig1139:7267..73331696318624.5848386-CDS-E-siliculosus-1a_F_contig1139:7267..7333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 7268..7333 +
1622927649.1755598-CDS-E-siliculosus-1a_F_contig1139:7584..79651622927649.1755598-CDS-E-siliculosus-1a_F_contig1139:7584..7965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 7585..7965 +
1696318624.5979123-CDS-E-siliculosus-1a_F_contig1139:7584..79651696318624.5979123-CDS-E-siliculosus-1a_F_contig1139:7584..7965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 7585..7965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927649.192263-UTR-E-siliculosus-1a_F_contig1139:7965..81751622927649.192263-UTR-E-siliculosus-1a_F_contig1139:7965..8175Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1139 7966..8175 +
1696318624.605317-UTR-E-siliculosus-1a_F_contig1139:7965..81751696318624.605317-UTR-E-siliculosus-1a_F_contig1139:7965..8175Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1139 7966..8175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1139.915.1

>prot_E-siliculosus-1a_F_contig1139.915.1 ID=prot_E-siliculosus-1a_F_contig1139.915.1|Name=mRNA_E-siliculosus-1a_F_contig1139.915.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MIGSDAVVGSVEGVLEYDLGSKGLPVQPPLSPLEASIRPFSVDEQEITGV
VFEKNENVTSLSFTRPITPEVAGKQTLLAGADTSAILLSAAGSDDSLGYH
FLGRGAFNIDLACSEDQPVIEGDVVEEDVVEGDEQPGTEAGSAVPLLT*
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mRNA from alignment at E-siliculosus-1a_F_contig1139:7268..8175+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1139.915.1 ID=mRNA_E-siliculosus-1a_F_contig1139.915.1|Name=mRNA_E-siliculosus-1a_F_contig1139.915.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=908bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:7268..8175+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAGGCTCCGACGCCGTCGTCGGTTCCGTTGAAGGAGTACTCGAGTA
TGACCTGGGTTCAAAGGTGTGCGCAATCCCTGTAGGAGAGGATTGACTCT
CCCGAGAGTTGGTCGGAGAGAAGACCTTGGAATGTCTCAATGTCTCCGGC
TGAATTACGCCGTGGCGAGGGACAGTTTAGGGTTGGAAAAATGCTTATCG
GCGCGAGCCAAACGCCGCGCGCAATGTCTCCTTTCTCCCTCCCCTTCCCT
CAACCACCGACACGCCTTCAACCCAACGCGTGCAATCGTACATGACGCTG
CACGGCGGTGCGTATAGGGGCTTCCCGTTCAGCCACCGCTCTCACCCCTC
GAAGCATCCATCCGGCCATTCTCTGTCGACGAGCAAGAAATCACGGGTGT
GGTGTTCGAGAAGAACGAGAACGTCACCTCGCTGTCCTTCACGCGACCGA
TAACCCCTGAGGTCGCTGGGAAGCAGACCCTCCTTGCCGGGGCGGACACT
TCGGCCATCTTGCTCTCGGCAGCCGGATCGGACGACTCTTTGGGCTACCA
CTTCCTCGGGCGCGGAGCTTTCAACATTGACCTGGCTTGTTCGGAGGACC
AACCCGTTATAGAAGGAGACGTGGTGGAAGAAGACGTGGTGGAAGGGGAC
GAGCAGCCTGGCACTGAGGCCGGCAGCGCCGTGCCTCTTCTCACCTAGGG
GCCGAGCACATCTCCGTTCACGGTGTTCTCCGTTAGCCCTAGTTCCGCAC
CCGCGCCCCCTTTCGCAGCCCAGCCGGCAGACGGTAGCACTACGAGCGGA
GCGTTGCCACGGGTGCCAACAGCGGTTGTTGGGTTTGTCTACAGATTTGC
TGGGGCGGCCGCCCTCGGATTTGCTACTGTCGAAGTGTTCTTCGCTTTTG
CCGTTCTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1139:7268..8175+

>mRNA_E-siliculosus-1a_F_contig1139.915.1 ID=mRNA_E-siliculosus-1a_F_contig1139.915.1|Name=mRNA_E-siliculosus-1a_F_contig1139.915.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:7268..8175+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATAGGCTCCGACGCCGTCGTCGGTTCCGTTGAAGGAGTACTCGAGTA
TGACCTGGGTTCAAAGATGATAGGCTCCGACGCCGTCGTCGGTTCCGTTG
AAGGAGTACTCGAGTATGACCTGGGTTCAAAGGGGCTTCCCGTTCAGCCA
CCGCTCTCACCCCTCGAAGCATCCATCCGGCCATTCTCTGTCGACGAGCA
AGAAATCACGGGTGTGGTGTTCGAGAAGAACGAGAACGTCACCTCGCTGT
CCTTCACGCGACCGATAACCCCTGAGGTCGCTGGGAAGCAGACCCTCCTT
GCCGGGGCGGACACTTCGGCCATCTTGCTCTCGGCAGCCGGATCGGACGA
CTCTTTGGGCTACCACTTCCTCGGGCGCGGAGCTTTCAACATTGACCTGG
CTTGTTCGGAGGACCAACCCGTTATAGAAGGAGACGTGGTGGAAGAAGAC
GTGGTGGAAGGGGACGAGCAGCCTGGCACTGAGGCCGGCAGCGCCGTGCC
TCTTCTCACCTAGGGGCTTCCCGTTCAGCCACCGCTCTCACCCCTCGAAG
CATCCATCCGGCCATTCTCTGTCGACGAGCAAGAAATCACGGGTGTGGTG
TTCGAGAAGAACGAGAACGTCACCTCGCTGTCCTTCACGCGACCGATAAC
CCCTGAGGTCGCTGGGAAGCAGACCCTCCTTGCCGGGGCGGACACTTCGG
CCATCTTGCTCTCGGCAGCCGGATCGGACGACTCTTTGGGCTACCACTTC
CTCGGGCGCGGAGCTTTCAACATTGACCTGGCTTGTTCGGAGGACCAACC
CGTTATAGAAGGAGACGTGGTGGAAGAAGACGTGGTGGAAGGGGACGAGC
AGCCTGGCACTGAGGCCGGCAGCGCCGTGCCTCTTCTCACCTAG
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