mRNA_E-siliculosus-1a_F_contig1139.914.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1139.914.1
Unique NamemRNA_E-siliculosus-1a_F_contig1139.914.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1139.914.1 vs. uniprot
Match: A0A6H5K0E8_9PHAE (Mitogen-activated protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E8_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 6.830e-54
Identity = 129/162 (79.63%), Postives = 132/162 (81.48%), Query Frame = 1 
Query:    1 VGVDAGGVGLEGTRDLPDKKKLQRKSVSFTGEEGYQLLGSEQSVASLSKAAVSAGSTGKMTSPVTVAPASTFFLRANRATSPMVTPHAAYATFAKNIPPHSSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASSSQGMFVPSAAEIPTTASVT 480
            VG+DAGGV LEG RDLPDKKKLQRKSVSFTGEEGYQLLGSEQSV SLSK AVSAG TGKMTSPVTVAPASTFFLRAN ATSPMVTPHAAYATFAKNIPPH++SATXXXXXX                   XXXXXXXX  ASSSQGM VPS AE PTTASVT
Sbjct:   26 VGMDAGGVRLEGARDLPDKKKLQRKSVSFTGEEGYQLLGSEQSVTSLSKGAVSAGGTGKMTSPVTVAPASTFFLRANPATSPMVTPHAAYATFAKNIPPHAASATXXXXXXVEAAVSHPTPRAVALRPAGXXXXXXXXXXASSSQGMLVPSVAESPTTASVT 187
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BLAST of mRNA_E-siliculosus-1a_F_contig1139.914.1 vs. uniprot
Match: D8LHP7_ECTSI (Mitogen-activated protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHP7_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 9.280e-49
Identity = 117/153 (76.47%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:    7 VDAGGVGLEGTRDLPDKKKLQRKSVSFTGEEGYQLLGSEQSVASLSKAAVSAGSTGKMTSPVTVAPASTFFLRANRATSPMVTPHAAYATFAKNIPPHSSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSSQGMFVPSAAEIPT 465
            VDAGGV LEG R LPDKKK QRKSVSFTGEEGYQLLGSEQSV SLSK AVSAG TGK+TSPVTVAPASTFFLRAN+ATSPMVTPHAAYA FAKNIPPH SSAT                       XXXXXXXXXX SSSQGMFVPSAAE PT
Sbjct:   31 VDAGGVRLEGARGLPDKKKFQRKSVSFTGEEGYQLLGSEQSVTSLSKGAVSAGGTGKITSPVTVAPASTFFLRANQATSPMVTPHAAYAAFAKNIPPHPSSATAAAAAVETAVSHPEPRAVASRPGXXXXXXXXXX-SSSQGMFVPSAAESPT 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1139.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0E8_9PHAE6.830e-5479.63Mitogen-activated protein kinase n=1 Tax=Ectocarpu... [more]
D8LHP7_ECTSI9.280e-4976.47Mitogen-activated protein kinase n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1139contigE-siliculosus-1a_F_contig1139:1467..3155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size633
Model size634
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.H
EC2.7.11.24
EggNOG OGsKOG0660@1,KOG0660@2759
EggNOG free text desc.MAP kinase activity
GOsGO:0000165,GO:0000187,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002237,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002684,GO:0002791,GO:0002793,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0004708,GO:0004712,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006935,GO:0006950,GO:0006955,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0007569,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010212,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010830,GO:0010831,GO:0012505,GO:0016192,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019903,GO:0022603,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030141,GO:0030154,GO:0030316,GO:0031098,GO:0031279,GO:0031281,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032501,GO:0032502,GO:0032655,GO:0032735,GO:0032879,GO:0032880,GO:0032940,GO:0033554,GO:0033674,GO:0033993,GO:0034774,GO:0035556,GO:0035924,GO:0036211,GO:0036230,GO:0038066,GO:0040011,GO:0042119,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042770,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045055,GO:0045321,GO:0045595,GO:0045597,GO:0045637,GO:0045639,GO:0045646,GO:0045648,GO:0045661,GO:0045663,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046903,GO:0048010,GO:0048255,GO:0048273,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050714,GO:0050715,GO:0050727,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051019,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051403,GO:0051525,GO:0051704,GO:0051707,GO:0051716,GO:0060142,GO:0060143,GO:0060205,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070391,GO:0070848,GO:0070887,GO:0070935,GO:0071214,GO:0071216,GO:0071219,GO:0071222,GO:0071223,GO:0071310,GO:0071363,GO:0071396,GO:0071478,GO:0071479,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0090087,GO:0090398,GO:0090400,GO:0097708,GO:0098586,GO:0099503,GO:0101002,GO:0104004,GO:0140096,GO:1900015,GO:1901564,GO:1901700,GO:1901701,GO:1901739,GO:1901741,GO:1901796,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903506,GO:1903530,GO:1903532,GO:1903706,GO:1903708,GO:1904813,GO:1904951,GO:2000026,GO:2000112,GO:2000377,GO:2000379,GO:2001141,GO:2001182,GO:2001184
KEGG ModuleM00687
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04016,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04016,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG koko:K04371,ko:K20536
Seed eggNOG ortholog2880.D8LHP7
Seed ortholog evalue1.3e-42
Seed ortholog score179.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1139.914.1prot_E-siliculosus-1a_F_contig1139.914.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1139 1467..3155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927648.9839396-CDS-E-siliculosus-1a_F_contig1139:1466..18711622927648.9839396-CDS-E-siliculosus-1a_F_contig1139:1466..1871Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 1467..1871 -
1696318624.4668202-CDS-E-siliculosus-1a_F_contig1139:1466..18711696318624.4668202-CDS-E-siliculosus-1a_F_contig1139:1466..1871Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 1467..1871 -
1622927649.0001884-CDS-E-siliculosus-1a_F_contig1139:2328..24481622927649.0001884-CDS-E-siliculosus-1a_F_contig1139:2328..2448Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 2329..2448 -
1696318624.4866629-CDS-E-siliculosus-1a_F_contig1139:2328..24481696318624.4866629-CDS-E-siliculosus-1a_F_contig1139:2328..2448Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 2329..2448 -
1622927649.01106-CDS-E-siliculosus-1a_F_contig1139:3047..31551622927649.01106-CDS-E-siliculosus-1a_F_contig1139:3047..3155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 3048..3155 -
1696318624.515069-CDS-E-siliculosus-1a_F_contig1139:3047..31551696318624.515069-CDS-E-siliculosus-1a_F_contig1139:3047..3155Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 3048..3155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1139.914.1

>prot_E-siliculosus-1a_F_contig1139.914.1 ID=prot_E-siliculosus-1a_F_contig1139.914.1|Name=mRNA_E-siliculosus-1a_F_contig1139.914.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=211bp
VGVDAGGVGLEGTRDLPDKKKLQRKSVSFTGEEGYQLLGSEQSVASLSKA
AVSAGSTGKMTSPVTVAPASTFFLRANRATSPMVTPHAAYATFAKNIPPH
SSSATAAAVAVETAVSHPEPRAVSPRPAGGGGGAGYDYASSSQGMFVPSA
AEIPTTASVTPPQQQAGPPPPPPTVASREPQRSVSGGGVTRETPPSPTPG
QATTDASAHES
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mRNA from alignment at E-siliculosus-1a_F_contig1139:1467..3155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1139.914.1 ID=mRNA_E-siliculosus-1a_F_contig1139.914.1|Name=mRNA_E-siliculosus-1a_F_contig1139.914.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1689bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:1467..3155- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGGGGTGGACGCGGGAGGAGTCGGACTAGAGGGCACGCGGGACCTCCC
TGATAAGAAGAAGCTGCAGAGAAAGAGCGTTTCTTTCACCGGGGAAGAGG
GCTACCAGGTTAGACCGCGTTTGCTGTTTTCGTTTGCTGCGTGTGCGTGC
GTGCGTGCGTGCGTGCGTGCGGGCGGGCGGGCGTCGTGTGTCGTTGTCGT
TGCCGTTTGTGCTCTTGTCTGTTTTGGTTGTTCCCGTCTGTGCTGTTTCT
GTTGATAGTTACGGAAATGCTGCTGGTGCTGCTGCTGCTGTGACTCCTCG
GGGCATGCGGGCTTCCGGCTAGGCCGCACCGGGAGACTTGCATGCCTGGT
TGAGTTACTCGTGTCTGTCTTTCTCGTCAAATGGTTGGATTCGAGCGATG
TTGCTCTGTTGTGGCCTAGATTCTAGGTGCAATTGGGCGTGGACTGTAGC
GGGTTTGGTGCCAACATGGCACCCTTTTCTGCAGGGACGTATGCATCCAT
TCCGTTGCGAACCCAATGTCAGACTGCATTGCTGAACCGTCGCCTGTTCT
CACAAAAGCTAGCCTTTCTCCTACGTTTGCTTTTTGTTCTCTCTGATGTC
ATGGATAGATACACGTAGCATTGCGTTCTGATGTTTTCGCTCGGCCCCTC
ACACACCGCGCTGCTTCAACAACTTTGATTGCGACCAAACCTCGAACCTC
ATGGCAGCTCCTGGGCAGCGAGCAGAGCGTCGCCTCCCTCTCAAAGGCAG
CTGTATCGGCGGGTAGTACCGGAAAAATGACGTCACCGGTAACCGTGGCC
CCGGCCTCGACGTTTTTCCTTCGTGCGGTGAGTCAAAATGCTTGGTGTGT
GTGTAATGTGGGCAGGAGCTTGGTGGTGGGGAGGTGTTCCAGCTCTCCAT
CGAACGTCGCGCGCTGTGCCACAGTATCGTAGGTGTTCTGGAATGCACGT
GTGCGTCGGAGAACAGGGGCATACCTAGCTGTGGCCCCCGCCATTAGCAG
GGTTGCGGCCCATGGCGTACTACTGTAGCATGCCTGCAACGTGAGGATCG
TTGAATGCAGTCCCGCCTCACCGAACCGGAACACACAAGAAACAGTGGGA
TTTCCGAAAGTGACCCTCATGCTGCAGATGTGATCTTGTTCCTGCCCGCA
CGAGTTGCTTCAAGTTTTTCGTTCACGCCGTCTTTCCGTGTGTCTCTTCT
GCCTCATTTCCATCTCTCAACCCCCACCCCTTCCTCCCCTCACAAACACG
AGTTCCTTCACCGTCTTCCTCTCCGCCCTCCCAGAACCGCGCGACGTCTC
CCATGGTGACACCTCACGCGGCGTACGCAACGTTTGCCAAGAACATTCCC
CCACACTCCTCTTCGGCAACGGCCGCGGCGGTGGCGGTGGAGACCGCGGT
TTCGCACCCCGAACCCAGAGCGGTATCCCCAAGGCCCGCTGGCGGCGGCG
GCGGAGCTGGCTACGACTATGCCTCGTCATCCCAGGGGATGTTTGTTCCG
AGCGCGGCCGAGATCCCGACCACCGCAAGCGTGACCCCTCCGCAGCAGCA
GGCGGGGCCGCCGCCACCGCCGCCGACTGTTGCCAGCCGGGAGCCACAGC
GGAGCGTCAGCGGTGGCGGCGTAACGCGGGAGACGCCGCCGTCTCCGACG
CCAGGGCAGGCGACCACGGACGCGAGCGCTCACGAGAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1139:1467..3155-

>mRNA_E-siliculosus-1a_F_contig1139.914.1 ID=mRNA_E-siliculosus-1a_F_contig1139.914.1|Name=mRNA_E-siliculosus-1a_F_contig1139.914.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1266bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:1467..3155- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGGGGTGGACGCGGGAGGAGTCGGACTAGAGGGCACGCGGGACCTCCC
TGATAAGAAGAAGCTGCAGAGAAAGAGCGTTTCTTTCACCGGGGAAGAGG
GCTACCAGGTCGGGGTGGACGCGGGAGGAGTCGGACTAGAGGGCACGCGG
GACCTCCCTGATAAGAAGAAGCTGCAGAGAAAGAGCGTTTCTTTCACCGG
GGAAGAGGGCTACCAGCTCCTGGGCAGCGAGCAGAGCGTCGCCTCCCTCT
CAAAGGCAGCTGTATCGGCGGGTAGTACCGGAAAAATGACGTCACCGGTA
ACCGTGGCCCCGGCCTCGACGTTTTTCCTTCGTGCGCTCCTGGGCAGCGA
GCAGAGCGTCGCCTCCCTCTCAAAGGCAGCTGTATCGGCGGGTAGTACCG
GAAAAATGACGTCACCGGTAACCGTGGCCCCGGCCTCGACGTTTTTCCTT
CGTGCGAACCGCGCGACGTCTCCCATGGTGACACCTCACGCGGCGTACGC
AACGTTTGCCAAGAACATTCCCCCACACTCCTCTTCGGCAACGGCCGCGG
CGGTGGCGGTGGAGACCGCGGTTTCGCACCCCGAACCCAGAGCGGTATCC
CCAAGGCCCGCTGGCGGCGGCGGCGGAGCTGGCTACGACTATGCCTCGTC
ATCCCAGGGGATGTTTGTTCCGAGCGCGGCCGAGATCCCGACCACCGCAA
GCGTGACCCCTCCGCAGCAGCAGGCGGGGCCGCCGCCACCGCCGCCGACT
GTTGCCAGCCGGGAGCCACAGCGGAGCGTCAGCGGTGGCGGCGTAACGCG
GGAGACGCCGCCGTCTCCGACGCCAGGGCAGGCGACCACGGACGCGAGCG
CTCACGAGAGCAACCGCGCGACGTCTCCCATGGTGACACCTCACGCGGCG
TACGCAACGTTTGCCAAGAACATTCCCCCACACTCCTCTTCGGCAACGGC
CGCGGCGGTGGCGGTGGAGACCGCGGTTTCGCACCCCGAACCCAGAGCGG
TATCCCCAAGGCCCGCTGGCGGCGGCGGCGGAGCTGGCTACGACTATGCC
TCGTCATCCCAGGGGATGTTTGTTCCGAGCGCGGCCGAGATCCCGACCAC
CGCAAGCGTGACCCCTCCGCAGCAGCAGGCGGGGCCGCCGCCACCGCCGC
CGACTGTTGCCAGCCGGGAGCCACAGCGGAGCGTCAGCGGTGGCGGCGTA
ACGCGGGAGACGCCGCCGTCTCCGACGCCAGGGCAGGCGACCACGGACGC
GAGCGCTCACGAGAGC
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