mRNA_E-siliculosus-1a_F_contig1139.913.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1139.913.1
Unique NamemRNA_E-siliculosus-1a_F_contig1139.913.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1139.913.1 vs. uniprot
Match: D8LHP7_ECTSI (Mitogen-activated protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHP7_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.840e-33
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = -1 
Query:    4 GADSREGSQAAWEQGADEAVQRRVSGEEESARCRRPQEVGDTARVVGGGEGDRSDSGRHDVRRALPSGGEGREE 225
            GADSREGSQAAWEQGADEAVQRRVSGEEESARCRRPQEVGD AR V GGEGDRSDSGRHDVRRALPSGGEGREE
Sbjct:  268 GADSREGSQAAWEQGADEAVQRRVSGEEESARCRRPQEVGDPARAVDGGEGDRSDSGRHDVRRALPSGGEGREE 341
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BLAST of mRNA_E-siliculosus-1a_F_contig1139.913.1 vs. uniprot
Match: A0A6H5K0E8_9PHAE (Mitogen-activated protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.930e-30
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = -1 
Query:    1 IMAGPRGADSREGSQAAWEQGADEAVQRRVSGEEESARCRRPQEVGDTARVVGGGEGDRSDSGRHDVRRALPSGGEGREEG 243
            IMAG  GADSREGS+AAWEQ ADEAVQRRVSGEE SARCRRPQE+GDTARVVGGGE DRSDSG+HDVRRALPSG +GR+EG
Sbjct:  265 IMAGTGGADSREGSRAAWEQRADEAVQRRVSGEE-SARCRRPQEMGDTARVVGGGERDRSDSGQHDVRRALPSG-QGRDEG 343
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1139.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHP7_ECTSI1.840e-3395.95Mitogen-activated protein kinase n=1 Tax=Ectocarpu... [more]
A0A6H5K0E8_9PHAE5.930e-3086.42Mitogen-activated protein kinase n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1139contigE-siliculosus-1a_F_contig1139:1191..1497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size306
Model size308
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927649.0525136-CDS-E-siliculosus-1a_F_contig1139:1190..14961622927649.0525136-CDS-E-siliculosus-1a_F_contig1139:1190..1496Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 1191..1496 +
1696318624.5343204-CDS-E-siliculosus-1a_F_contig1139:1190..14961696318624.5343204-CDS-E-siliculosus-1a_F_contig1139:1190..1496Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1139 1191..1496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1139.913.1prot_E-siliculosus-1a_F_contig1139.913.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1139 1191..1496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1139.913.1

>prot_E-siliculosus-1a_F_contig1139.913.1 ID=prot_E-siliculosus-1a_F_contig1139.913.1|Name=mRNA_E-siliculosus-1a_F_contig1139.913.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
AFFSSFSSARQGSPYVVPSAIRPIAFPTADNPCRVAHFLRPPAASALLLA
RHATLNRLVRALLPRGLASLSRVSTPRAGHDRRRRRCCAAAAALVSARVR
GR
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mRNA from alignment at E-siliculosus-1a_F_contig1139:1191..1497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1139.913.1 ID=mRNA_E-siliculosus-1a_F_contig1139.913.1|Name=mRNA_E-siliculosus-1a_F_contig1139.913.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=307bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:1191..1497+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCTTCTTCTCTTCCTTCTCCTCCGCTAGGCAAGGCTCGCCGTACGTCGT
GCCGTCCGCTATCAGACCGATCGCCTTCCCCACCGCCGACAACCCTTGCC
GTGTCGCCCACTTCCTGCGGCCGCCGGCAGCGAGCGCTCTCCTCCTCGCC
CGACACGCGACGCTGAACCGCCTCGTCCGCGCCCTGCTCCCACGCGGCTT
GGCTTCCCTCTCGCGAGTCAGCACCCCTCGGGCCGGCCATGATCGCCGCC
GCCGCCGCTGCTGCGCCGCCGCCGCCGCTCTCGTGAGCGCTCGCGTCCGT
GGTCGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1139:1191..1497+

>mRNA_E-siliculosus-1a_F_contig1139.913.1 ID=mRNA_E-siliculosus-1a_F_contig1139.913.1|Name=mRNA_E-siliculosus-1a_F_contig1139.913.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1139:1191..1497+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCTTCTTCTCTTCCTTCTCCTCCGCTAGGCAAGGCTCGCCGTACGTCGT
GCCGTCCGCTATCAGACCGATCGCCTTCCCCACCGCCGACAACCCTTGCC
GTGTCGCCCACTTCCTGCGGCCGCCGGCAGCGAGCGCTCTCCTCCTCGCC
CGACACGCGACGCTGAACCGCCTCGTCCGCGCCCTGCTCCCACGCGGCTT
GGCTTCCCTCTCGCGAGTCAGCACCCCTCGGGCCGGCCATGATCGCCGCC
GCCGCCGCTGCTGCGCCGCCGCCGCCGCTCTCGTGAGCGCTCGCGTCCGT
GGTCGCGCCTTCTTCTCTTCCTTCTCCTCCGCTAGGCAAGGCTCGCCGTA
CGTCGTGCCGTCCGCTATCAGACCGATCGCCTTCCCCACCGCCGACAACC
CTTGCCGTGTCGCCCACTTCCTGCGGCCGCCGGCAGCGAGCGCTCTCCTC
CTCGCCCGACACGCGACGCTGAACCGCCTCGTCCGCGCCCTGCTCCCACG
CGGCTTGGCTTCCCTCTCGCGAGTCAGCACCCCTCGGGCCGGCCATGATC
GCCGCCGCCGCCGCTGCTGCGCCGCCGCCGCCGCTCTCGTGAGCGCTCGC
GTCCGTGGTCGC
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