mRNA_E-siliculosus-1a_F_contig11370.906.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11370.906.1
Unique NamemRNA_E-siliculosus-1a_F_contig11370.906.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A0F9Y669_9ZZZZ (ACPS domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9Y669_9ZZZZ)

HSP 1 Score: 223 bits (568), Expect = 1.780e-73
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIARIERFARAVQRHGPRFA RILGPDEHAVWLQK+Q AAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLND LGKPH +LSGEADRL+K AGVT SHITLSDEADYAVAFVVLER
Sbjct:    6 GSDIARIERFARAVQRHGPRFALRILGPDEHAVWLQKAQPAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDALGKPHLMLSGEADRLMKVAGVTASHITLSDEADYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A2A3XJL3_9GAMM (Holo-[acyl-carrier-protein] synthase n=3 Tax=Halomonas TaxID=2745 RepID=A0A2A3XJL3_9GAMM)

HSP 1 Score: 223 bits (567), Expect = 2.530e-73
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIAR+ERFA+AV+RHGPRFAQRILGPDEHA WLQKSQ AAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEA+RL+ AAGVT SH+TLSDEA+YAVAFVVLER
Sbjct:    6 GSDIARVERFAQAVKRHGPRFAQRILGPDEHAAWLQKSQPAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEAERLLLAAGVTASHVTLSDEAEYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A651D2I0_HALSX (Holo-[acyl-carrier-protein] synthase n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A651D2I0_HALSX)

HSP 1 Score: 220 bits (561), Expect = 2.080e-72
Identity = 109/120 (90.83%), Postives = 114/120 (95.00%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIARIERF RAV+RHGPRFAQRILGPDEHAVW QKSQ AAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLND LGKP+FLLSGEA+RL +AAGVT SHITLSDEADYAVAFV+LER
Sbjct:    6 GSDIARIERFTRAVERHGPRFAQRILGPDEHAVWRQKSQPAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDALGKPYFLLSGEAERLFQAAGVTASHITLSDEADYAVAFVILER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: UPI001B8AD3E8 (holo-ACP synthase n=1 Tax=Halomonas boliviensis TaxID=223527 RepID=UPI001B8AD3E8)

HSP 1 Score: 213 bits (543), Expect = 1.320e-69
Identity = 102/120 (85.00%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIAR+ERF RA+QRHGPRFAQRILGP+EHA+W QKS+ AAFLAKRFAAKEAFVKALGLGLR+G+QWCDIQVLND LGKP+FLL+GEA RL++AAGVTTSH+TLSDEA+YAVAFVVLER
Sbjct:    6 GSDIARVERFTRAIQRHGPRFAQRILGPEEHALWQQKSEPAAFLAKRFAAKEAFVKALGLGLRQGLQWCDIQVLNDALGKPYFLLNGEAGRLLQAAGVTTSHVTLSDEAEYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A117KIK1_9GAMM (Holo-[acyl-carrier-protein] synthase n=1 Tax=Halomonas sp. 54_146 TaxID=1635257 RepID=A0A117KIK1_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 1.640e-69
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIARIERF RAVQRHGPRFAQRILGPDEHAVWL+KSQ AAFLAKRFAAKEAFVKALGLGLR+G+QW DIQVLND LGKP+F LSGEA+R IK AG+T SHITLSDEADYAVAFVVLER
Sbjct:    6 GSDIARIERFVRAVQRHGPRFAQRILGPDEHAVWLEKSQPAAFLAKRFAAKEAFVKALGLGLRQGIQWSDIQVLNDALGKPYFQLSGEAERQIKTAGITASHITLSDEADYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A0D5M5K2_9GAMM (Holo-[acyl-carrier-protein] synthase n=5 Tax=Halomonas TaxID=2745 RepID=A0A0D5M5K2_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 1.700e-69
Identity = 104/120 (86.67%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIARIERF RAVQRHGPRFAQRILGP+EH +WLQKSQ AAFLAKRFAAKEAFVKALGLGLR GMQWCDIQVLND LGKP+F+L G+A+RL++AAGVT SHITLSDEA+YAVAFVVLER
Sbjct:    6 GSDIARIERFTRAVQRHGPRFAQRILGPEEHTLWLQKSQPAAFLAKRFAAKEAFVKALGLGLRHGMQWCDIQVLNDALGKPYFVLDGKAERLLQAAGVTASHITLSDEAEYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A0D6EAB4_9GAMM (Holo-[acyl-carrier-protein] synthase n=7 Tax=Halomonas TaxID=2745 RepID=A0A0D6EAB4_9GAMM)

HSP 1 Score: 207 bits (527), Expect = 3.180e-67
Identity = 101/120 (84.17%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIAR+ERF RA+QRHGPRFAQRILGPDE  +WLQKSQ AAFLAKRFAAKEAFVKALGLGLR+G+QW DIQVLND LGKP+FLLSGEA+RL++AAGV  SH+TLSDEA+YAVAFVVLER
Sbjct:    6 GSDIARVERFTRAMQRHGPRFAQRILGPDEQTLWLQKSQPAAFLAKRFAAKEAFVKALGLGLRQGLQWSDIQVLNDALGKPYFLLSGEAERLLQAAGVINSHVTLSDEAEYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A265DXI2_9GAMM (Holo-[acyl-carrier-protein] synthase n=5 Tax=Halomonas TaxID=2745 RepID=A0A265DXI2_9GAMM)

HSP 1 Score: 206 bits (524), Expect = 1.040e-66
Identity = 99/119 (83.19%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLE 357
            GSDIAR+ERFARA+QRHGPRFA RILGP+EHA+W QKSQ  AFLAKRFAAKEAFVKALGLGLR+G+QWCDIQVLND LGKP+FLL+GEA RL++ AGVTTSH+TLSDEA+YAVAFV+LE
Sbjct:    6 GSDIARVERFARAMQRHGPRFALRILGPEEHALWQQKSQPVAFLAKRFAAKEAFVKALGLGLRQGLQWCDIQVLNDGLGKPYFLLNGEAKRLLQVAGVTTSHVTLSDEAEYAVAFVILE 124
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A0C3EJR2_9GAMM (Holo-[acyl-carrier-protein] synthase n=4 Tax=Halomonas TaxID=2745 RepID=A0A0C3EJR2_9GAMM)

HSP 1 Score: 202 bits (514), Expect = 3.050e-65
Identity = 97/120 (80.83%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIAR+ERF RA++RHGPRFA+RILGPDE A+WL K+Q AAFLAKRFAAKEAFVKALG+GLR+G+QW DIQVLND LGKP+FLL+GEA+RL++AAGVT SH+TLSDEA+YAVAFVVLER
Sbjct:    6 GSDIARVERFTRAMKRHGPRFAERILGPDEQALWLHKAQPAAFLAKRFAAKEAFVKALGVGLRQGLQWGDIQVLNDALGKPYFLLNGEAERLLQAAGVTASHVTLSDEAEYAVAFVVLER 125
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BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Match: A0A1U9R865_9GAMM (Holo-[acyl-carrier-protein] synthase n=2 Tax=Halomonas TaxID=2745 RepID=A0A1U9R865_9GAMM)

HSP 1 Score: 190 bits (482), Expect = 2.300e-60
Identity = 93/120 (77.50%), Postives = 104/120 (86.67%), Query Frame = 1 
Query:    1 GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAAKEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTTSHITLSDEADYAVAFVVLER 360
            GSDIAR+ERFARAVQRHGPRFA RILGP E A+W QK +  A+LAKRFAAKEAFVKALGLGLR GMQW DIQV+ND LGKP   LSGEA RL +A+G +T+H+TLSDEADYAVAFV+LER
Sbjct:    6 GSDIARVERFARAVQRHGPRFAARILGPQEQAIWCQKGEPVAYLAKRFAAKEAFVKALGLGLRSGMQWGDIQVVNDPLGKPSLALSGEALRLFQASGASTTHVTLSDEADYAVAFVILER 125
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11370.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F9Y669_9ZZZZ1.780e-7392.50ACPS domain-containing protein n=1 Tax=marine sedi... [more]
A0A2A3XJL3_9GAMM2.530e-7390.83Holo-[acyl-carrier-protein] synthase n=3 Tax=Halom... [more]
A0A651D2I0_HALSX2.080e-7290.83Holo-[acyl-carrier-protein] synthase n=2 Tax=Halom... [more]
UPI001B8AD3E81.320e-6985.00holo-ACP synthase n=1 Tax=Halomonas boliviensis Ta... [more]
A0A117KIK1_9GAMM1.640e-6988.33Holo-[acyl-carrier-protein] synthase n=1 Tax=Halom... [more]
A0A0D5M5K2_9GAMM1.700e-6986.67Holo-[acyl-carrier-protein] synthase n=5 Tax=Halom... [more]
A0A0D6EAB4_9GAMM3.180e-6784.17Holo-[acyl-carrier-protein] synthase n=7 Tax=Halom... [more]
A0A265DXI2_9GAMM1.040e-6683.19Holo-[acyl-carrier-protein] synthase n=5 Tax=Halom... [more]
A0A0C3EJR2_9GAMM3.050e-6580.83Holo-[acyl-carrier-protein] synthase n=4 Tax=Halom... [more]
A0A1U9R865_9GAMM2.300e-6077.50Holo-[acyl-carrier-protein] synthase n=2 Tax=Halom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11370contigE-siliculosus-1a_F_contig11370:3..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size363
Model size363
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelOceanospirillales
COG Functional cat.I
EC2.7.8.7,3.2.1.52
EggNOG OGs1MZBF@1224,1S98P@1236,1XKU7@135619,COG0736@1,COG0736@2
EggNOG free text desc.Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006633,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008897,GO:0009058,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0018070,GO:0018193,GO:0018209,GO:0018215,GO:0019538,GO:0019752,GO:0032787,GO:0036211,GO:0043170,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:0072330,GO:1901564,GO:1901576
KEGG ModuleM00628
KEGG Pathwayko00520,ko00531,ko00770,ko01100,ko01501,map00520,map00531,map00770,map01100,map01501
KEGG ReactionR00022,R01625,R05963,R07809,R07810,R10831
KEGG koko:K00997,ko:K01207
KEGG rclassRC00002,RC00049
Preferred nameacpS
Seed eggNOG ortholog1504981.KO116_0791
Seed ortholog evalue3.5e-53
Seed ortholog score214.2
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.9920893-CDS-E-siliculosus-1a_F_contig11370:2..3651622927647.9920893-CDS-E-siliculosus-1a_F_contig11370:2..365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11370 3..365 +
1696318623.9623735-CDS-E-siliculosus-1a_F_contig11370:2..3651696318623.9623735-CDS-E-siliculosus-1a_F_contig11370:2..365Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11370 3..365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11370.906.1prot_E-siliculosus-1a_F_contig11370.906.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11370 3..365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11370.906.1

>prot_E-siliculosus-1a_F_contig11370.906.1 ID=prot_E-siliculosus-1a_F_contig11370.906.1|Name=mRNA_E-siliculosus-1a_F_contig11370.906.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp
GSDIARIERFARAVQRHGPRFAQRILGPDEHAVWLQKSQSAAFLAKRFAA
KEAFVKALGLGLREGMQWCDIQVLNDTLGKPHFLLSGEADRLIKAAGVTT
SHITLSDEADYAVAFVVLER*
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mRNA from alignment at E-siliculosus-1a_F_contig11370:3..365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11370.906.1 ID=mRNA_E-siliculosus-1a_F_contig11370.906.1|Name=mRNA_E-siliculosus-1a_F_contig11370.906.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11370:3..365+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTCCGATATTGCCCGCATTGAGCGGTTTGCTCGGGCCGTGCAACGTCA
TGGCCCGCGCTTTGCCCAGCGAATTTTAGGTCCTGATGAACATGCAGTTT
GGCTGCAGAAATCTCAGTCTGCTGCGTTTCTAGCTAAGCGTTTTGCTGCA
AAAGAAGCCTTTGTTAAAGCGTTGGGGTTGGGGTTGCGCGAAGGGATGCA
GTGGTGCGATATCCAGGTGCTTAACGATACGCTGGGCAAGCCGCATTTTT
TGCTTAGCGGTGAAGCCGACCGGCTTATCAAGGCAGCAGGCGTCACGACC
AGCCACATTACGTTAAGTGATGAAGCTGATTATGCTGTCGCCTTCGTGGT
TCTAGAACGCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11370:3..365+

>mRNA_E-siliculosus-1a_F_contig11370.906.1 ID=mRNA_E-siliculosus-1a_F_contig11370.906.1|Name=mRNA_E-siliculosus-1a_F_contig11370.906.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11370:3..365+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCTCCGATATTGCCCGCATTGAGCGGTTTGCTCGGGCCGTGCAACGTCA
TGGCCCGCGCTTTGCCCAGCGAATTTTAGGTCCTGATGAACATGCAGTTT
GGCTGCAGAAATCTCAGTCTGCTGCGTTTCTAGCTAAGCGTTTTGCTGCA
AAAGAAGCCTTTGTTAAAGCGTTGGGGTTGGGGTTGCGCGAAGGGATGCA
GTGGTGCGATATCCAGGTGCTTAACGATACGCTGGGCAAGCCGCATTTTT
TGCTTAGCGGTGAAGCCGACCGGCTTATCAAGGCAGCAGGCGTCACGACC
AGCCACATTACGTTAAGTGATGAAGCTGATTATGCTGTCGCCTTCGTGGT
TCTAGAACGCTAAGGCTCCGATATTGCCCGCATTGAGCGGTTTGCTCGGG
CCGTGCAACGTCATGGCCCGCGCTTTGCCCAGCGAATTTTAGGTCCTGAT
GAACATGCAGTTTGGCTGCAGAAATCTCAGTCTGCTGCGTTTCTAGCTAA
GCGTTTTGCTGCAAAAGAAGCCTTTGTTAAAGCGTTGGGGTTGGGGTTGC
GCGAAGGGATGCAGTGGTGCGATATCCAGGTGCTTAACGATACGCTGGGC
AAGCCGCATTTTTTGCTTAGCGGTGAAGCCGACCGGCTTATCAAGGCAGC
AGGCGTCACGACCAGCCACATTACGTTAAGTGATGAAGCTGATTATGCTG
TCGCCTTCGTGGTTCTAGAACGCTAA
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