mRNA_E-siliculosus-1a_F_contig11367.903.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11367.903.1
Unique NamemRNA_E-siliculosus-1a_F_contig11367.903.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11367.903.1 vs. uniprot
Match: A0A6H5KWJ1_9PHAE (Methyltranfer_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWJ1_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.440e-67
Identity = 124/134 (92.54%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    4 PGRTSFRHHHTGHGNNGPAAAAVGLRPAYAAAAASGVEGAAAERLVSSYAATRSTARMGIVGAGVGRAVGRGLAAAAFATGGFLTRRTAVVGAAVAAVGLLGAVAIKVLDTPSRPYDADANTVGNEYDAWTEVG 405
            PGRTSFRHH TG  NNGPAAAAVGLRPAYAAA A GVEG A ERLVSSYAATRSTARMGIVGAGVGRAVGRGLAAAAFATGGFLTRRT VVGAAVAAVGLLGAVA+KVLDTPSRPYDADANTVGNEYDAWTE G
Sbjct:   46 PGRTSFRHHRTGGRNNGPAAAAVGLRPAYAAAVADGVEGTATERLVSSYAATRSTARMGIVGAGVGRAVGRGLAAAAFATGGFLTRRTVVVGAAVAAVGLLGAVAMKVLDTPSRPYDADANTVGNEYDAWTEDG 179
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BLAST of mRNA_E-siliculosus-1a_F_contig11367.903.1 vs. uniprot
Match: A0A835ZA13_9STRA (MPBQ/MSBQ transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA13_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.870e-6
Identity = 31/50 (62.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  256 TRRTAVVGAAVAAVGLLGAVAIKVLDTPSRPYDADANTVGNEYDAWTEVG 405
            TRR A+  AA  AV L   V   +LD PSRPYD +ANTVGNEYDAW E G
Sbjct:   82 TRRAAIAVAATTAVVL---VVKALLDKPSRPYDREANTVGNEYDAWCEDG 128
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BLAST of mRNA_E-siliculosus-1a_F_contig11367.903.1 vs. uniprot
Match: A0A830H9M2_9CHLO (Methyltransf_11 domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9M2_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 7.170e-6
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  283 AVAAVGLLGAVAIKVLDTPSRPYDADANTVGNEYDAWTEVGGL 411
            A AA+  +   A K+LDTPSR Y A A+TVGNEYDAWTE G L
Sbjct:   86 ATAALATIALAAKKILDTPSREYVAGADTVGNEYDAWTEEGVL 128
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BLAST of mRNA_E-siliculosus-1a_F_contig11367.903.1 vs. uniprot
Match: A0A7S2ARK4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2ARK4_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.570e-5
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  322 KVLDTPSRPYDADANTVGNEYDAWTEVGGL 411
            K+LDTPSR Y A A+TVGNEYDAWTE G L
Sbjct:    3 KILDTPSREYVAGADTVGNEYDAWTEEGVL 32
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BLAST of mRNA_E-siliculosus-1a_F_contig11367.903.1 vs. uniprot
Match: A0A7S2C8Q8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C8Q8_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 6.240e-5
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:  286 VAAVGLLGAVAIKVLDTPSRPYDADANTVGNEYDAWTEVG 405
            VA V +   V  K+LDTPSR Y+ + NTVG EYDAWTE G
Sbjct:  103 VAGVAVAAPVIKKILDTPSRTYNREENTVGKEYDAWTEEG 142
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11367.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KWJ1_9PHAE1.440e-6792.54Methyltranfer_dom domain-containing protein n=2 Ta... [more]
A0A835ZA13_9STRA2.870e-662.00MPBQ/MSBQ transferase n=1 Tax=Tribonema minus TaxI... [more]
A0A830H9M2_9CHLO7.170e-662.79Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S2ARK4_9CHLO1.570e-576.67Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A7S2C8Q8_9STRA6.240e-560.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11367contigE-siliculosus-1a_F_contig11367:245..1252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size411
Model size411
Exons2
Ec32 orthologEc-21_003900.1
Ec32 ortholog descriptionMPBQ/MSBQ transferase
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.Q
EC2.1.1.295,2.1.1.95
EggNOG OGsCOG0500@1,KOG1269@2759
EggNOG free text desc.sterol 24-C-methyltransferase activity
KEGG ModuleM00112
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ReactionR07236,R07501,R07504,R10491,R10492,R10709,R10710
KEGG koko:K05928,ko:K18534
KEGG rclassRC00003,RC01662
Seed eggNOG ortholog2880.D7FUJ0
Seed ortholog evalue2.2e-56
Seed ortholog score224.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.9943426-CDS-E-siliculosus-1a_F_contig11367:244..4871622927646.9943426-CDS-E-siliculosus-1a_F_contig11367:244..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11367 245..487 +
1696318623.4833345-CDS-E-siliculosus-1a_F_contig11367:244..4871696318623.4833345-CDS-E-siliculosus-1a_F_contig11367:244..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11367 245..487 +
1622927647.0060847-CDS-E-siliculosus-1a_F_contig11367:1084..12521622927647.0060847-CDS-E-siliculosus-1a_F_contig11367:1084..1252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11367 1085..1252 +
1696318623.4943578-CDS-E-siliculosus-1a_F_contig11367:1084..12521696318623.4943578-CDS-E-siliculosus-1a_F_contig11367:1084..1252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11367 1085..1252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11367.903.1prot_E-siliculosus-1a_F_contig11367.903.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11367 245..1252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11367.903.1

>prot_E-siliculosus-1a_F_contig11367.903.1 ID=prot_E-siliculosus-1a_F_contig11367.903.1|Name=mRNA_E-siliculosus-1a_F_contig11367.903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=137bp
APGRTSFRHHHTGHGNNGPAAAAVGLRPAYAAAAASGVEGAAAERLVSSY
AATRSTARMGIVGAGVGRAVGRGLAAAAFATGGFLTRRTAVVGAAVAAVG
LLGAVAIKVLDTPSRPYDADANTVGNEYDAWTEVGGL
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mRNA from alignment at E-siliculosus-1a_F_contig11367:245..1252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11367.903.1 ID=mRNA_E-siliculosus-1a_F_contig11367.903.1|Name=mRNA_E-siliculosus-1a_F_contig11367.903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11367:245..1252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCCCAGGCCGCACGAGCTTTCGACATCATCACACCGGCCACGGAAACAA
CGGCCCAGCGGCGGCCGCGGTAGGGCTGCGGCCGGCCTACGCGGCGGCGG
CAGCGTCCGGTGTCGAGGGGGCTGCGGCGGAGCGGTTAGTGAGCAGCTAC
GCGGCGACTAGAAGTACGGCCAGGATGGGAATCGTCGGGGCCGGGGTGGG
ACGGGCGGTGGGGAGAGGGCTGGCCGCTGCGGCGTTCGCCACGGTGAGAG
TTGGTGGTGGCGTTGTTTGGAGTTTTTGGGGCGCCTTGCGCGGAAGAGGT
TTCTTGTTTTTCTGCTCCTGTTGTTGTTGCTGTTGTTGTTGCGGTTGTTA
CTGTTCACTGTGACATGGGGTGTACTATTTAGTATGTCCTTCACCGAACC
CGTTGATTATTGTCGGTGTTTTTTTTTCGTGTGGTTTGGGTCAAAACCAG
GAACGACGCGGCACATCATCGTTTTGTCTTTCACAACCAGATTTTTCTTG
CCAGGATTTTGCTGCCAGCAGAACGATCGACATCCGTTGCTTTTTTCATG
TTGTTTTCCAGTACGGCAGTCGTCGCAAGCAAGAGCAACACCGATTGCAC
ACCTCTTCCTAGAATGCTTGCATCGGCTCCAATGGGCAAGCGCTATCTCC
TAGAGTACAACAAAAGTTCGTTTCGCGATGCAGTACCTCATTTCTCCGGG
GTACACCAACTGCTGTGCTTTCCTCTTGTTCGTTTTCGTTGAGTTGGATC
GAGTTAGACCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCGGGCCTGTTGATAAAATACAAAATACAGGGAGGCTTTC
TTACTCGCCGGACGGCCGTGGTGGGCGCGGCGGTGGCGGCGGTCGGCCTT
CTCGGGGCCGTGGCCATCAAGGTGCTCGACACCCCCTCGAGGCCGTACGA
CGCGGACGCTAATACGGTCGGGAACGAGTACGATGCTTGGACGGAGGTGG
GCGGGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11367:245..1252+

>mRNA_E-siliculosus-1a_F_contig11367.903.1 ID=mRNA_E-siliculosus-1a_F_contig11367.903.1|Name=mRNA_E-siliculosus-1a_F_contig11367.903.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11367:245..1252+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCCCAGGCCGCACGAGCTTTCGACATCATCACACCGGCCACGGAAACAA
CGGCCCAGCGGCGGCCGCGGTAGGGCTGCGGCCGGCCTACGCGGCGGCGG
CAGCGTCCGGTGTCGAGGGGGCTGCGGCGGAGCGGTTAGTGAGCAGCTAC
GCGGCGACTAGAAGTACGGCCAGGATGGGAATCGTCGGGGCCGGGGTGGG
ACGGGCGGTGGGGAGAGGGCTGGCCGCTGCGGCGTTCGCCACGGCCCCAG
GCCGCACGAGCTTTCGACATCATCACACCGGCCACGGAAACAACGGCCCA
GCGGCGGCCGCGGTAGGGCTGCGGCCGGCCTACGCGGCGGCGGCAGCGTC
CGGTGTCGAGGGGGCTGCGGCGGAGCGGTTAGTGAGCAGCTACGCGGCGA
CTAGAAGTACGGCCAGGATGGGAATCGTCGGGGCCGGGGTGGGACGGGCG
GTGGGGAGAGGGCTGGCCGCTGCGGCGTTCGCCACGGGAGGCTTTCTTAC
TCGCCGGACGGCCGTGGTGGGCGCGGCGGTGGCGGCGGTCGGCCTTCTCG
GGGCCGTGGCCATCAAGGTGCTCGACACCCCCTCGAGGCCGTACGACGCG
GACGCTAATACGGTCGGGAACGAGTACGATGCTTGGACGGAGGTGGGCGG
GTTGGGAGGCTTTCTTACTCGCCGGACGGCCGTGGTGGGCGCGGCGGTGG
CGGCGGTCGGCCTTCTCGGGGCCGTGGCCATCAAGGTGCTCGACACCCCC
TCGAGGCCGTACGACGCGGACGCTAATACGGTCGGGAACGAGTACGATGC
TTGGACGGAGGTGGGCGGGTTG
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