mRNA_E-siliculosus-1a_F_contig11363.901.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11363.901.1
Unique NamemRNA_E-siliculosus-1a_F_contig11363.901.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11363.901.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-8
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  358 FAGNQRVCGKFFKAVFPVSNNVIYAAKGTPGARASSNV 471
            +AGN+ VCGKFFK+VFP SNN+I AAKGTPG+R S+NV
Sbjct:  164 YAGNRLVCGKFFKSVFPASNNLICAAKGTPGSRTSANV 201
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11363.901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTH9_9PHAE1.180e-873.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11363contigE-siliculosus-1a_F_contig11363:1480..1953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size453
Model size474
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11363.901.1prot_E-siliculosus-1a_F_contig11363.901.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11363 1482..1934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.8680587-UTR-E-siliculosus-1a_F_contig11363:1479..14811622927646.8680587-UTR-E-siliculosus-1a_F_contig11363:1479..1481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11363 1480..1481 +
1696318623.40824-UTR-E-siliculosus-1a_F_contig11363:1479..14811696318623.40824-UTR-E-siliculosus-1a_F_contig11363:1479..1481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11363 1480..1481 +
1622927646.8935175-UTR-E-siliculosus-1a_F_contig11363:1934..19531622927646.8935175-UTR-E-siliculosus-1a_F_contig11363:1934..1953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11363 1935..1953 +
1696318623.4440734-UTR-E-siliculosus-1a_F_contig11363:1934..19531696318623.4440734-UTR-E-siliculosus-1a_F_contig11363:1934..1953Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11363 1935..1953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.881415-CDS-E-siliculosus-1a_F_contig11363:1481..19341622927646.881415-CDS-E-siliculosus-1a_F_contig11363:1481..1934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11363 1482..1934 +
1696318623.4274442-CDS-E-siliculosus-1a_F_contig11363:1481..19341696318623.4274442-CDS-E-siliculosus-1a_F_contig11363:1481..1934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11363 1482..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11363.901.1

>prot_E-siliculosus-1a_F_contig11363.901.1 ID=prot_E-siliculosus-1a_F_contig11363.901.1|Name=mRNA_E-siliculosus-1a_F_contig11363.901.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp
MVLSSDILAFFSDVPGSTALDVVRPLPQARPPFPLRRRRSLRKKNRPRAQ
ASDLSAVVADDCCLKQCGRHFADSKRDDYSFDLLRAEHQRYQALESEPAR
KHFVIQKVPLQRKHKHKLFCRQSEGVWEVLQGRVSCFQQRHLRRERNTRC
*
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mRNA from alignment at E-siliculosus-1a_F_contig11363:1480..1953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11363.901.1 ID=mRNA_E-siliculosus-1a_F_contig11363.901.1|Name=mRNA_E-siliculosus-1a_F_contig11363.901.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=474bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11363:1480..1953+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCATGGTCCTCAGCTCAGACATCCTAGCCTTCTTTAGTGATGTACCTGGG
TCTACTGCCCTGGACGTCGTGCGCCCTCTTCCCCAGGCGCGCCCGCCCTT
CCCTCTTCGACGTCGGCGGAGCCTCCGAAAAAAAAATCGTCCTCGCGCCC
AAGCGAGCGATCTATCTGCTGTCGTCGCCGACGATTGTTGCCTCAAGCAA
TGTGGTAGGCATTTTGCCGACTCTAAACGGGATGACTACAGCTTCGACCT
GCTCAGGGCCGAGCACCAGCGATATCAGGCGTTGGAGAGCGAACCAGCGA
GGAAACATTTCGTCATCCAAAAGGTCCCCCTCCAACGTAAGCACAAGCAC
AAGCTGTTTTGCCGGCAATCAGAGGGTGTGTGGGAAGTTCTTCAAGGCCG
TGTTTCCTGTTTCCAACAACGTCATCTACGCCGCGAAAGGAACACCCGGT
GCTAGAGCATCGAGCAACGTCAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11363:1480..1953+

>mRNA_E-siliculosus-1a_F_contig11363.901.1 ID=mRNA_E-siliculosus-1a_F_contig11363.901.1|Name=mRNA_E-siliculosus-1a_F_contig11363.901.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11363:1480..1953+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCCTCAGCTCAGACATCCTAGCCTTCTTTAGTGATGTACCTGGGTC
TACTGCCCTGGACGTCGTGCGCCCTCTTCCCCAGGCGCGCCCGCCCTTCC
CTCTTCGACGTCGGCGGAGCCTCCGAAAAAAAAATCGTCCTCGCGCCCAA
GCGAGCGATCTATCTGCTGTCGTCGCCGACGATTGTTGCCTCAAGCAATG
TGGTAGGCATTTTGCCGACTCTAAACGGGATGACTACAGCTTCGACCTGC
TCAGGGCCGAGCACCAGCGATATCAGGCGTTGGAGAGCGAACCAGCGAGG
AAACATTTCGTCATCCAAAAGGTCCCCCTCCAACGTAAGCACAAGCACAA
GCTGTTTTGCCGGCAATCAGAGGGTGTGTGGGAAGTTCTTCAAGGCCGTG
TTTCCTGTTTCCAACAACGTCATCTACGCCGCGAAAGGAACACCCGGTGC
TAGATGGTCCTCAGCTCAGACATCCTAGCCTTCTTTAGTGATGTACCTGG
GTCTACTGCCCTGGACGTCGTGCGCCCTCTTCCCCAGGCGCGCCCGCCCT
TCCCTCTTCGACGTCGGCGGAGCCTCCGAAAAAAAAATCGTCCTCGCGCC
CAAGCGAGCGATCTATCTGCTGTCGTCGCCGACGATTGTTGCCTCAAGCA
ATGTGGTAGGCATTTTGCCGACTCTAAACGGGATGACTACAGCTTCGACC
TGCTCAGGGCCGAGCACCAGCGATATCAGGCGTTGGAGAGCGAACCAGCG
AGGAAACATTTCGTCATCCAAAAGGTCCCCCTCCAACGTAAGCACAAGCA
CAAGCTGTTTTGCCGGCAATCAGAGGGTGTGTGGGAAGTTCTTCAAGGCC
GTGTTTCCTGTTTCCAACAACGTCATCTACGCCGCGAAAGGAACACCCGG
TGCTAG
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