mRNA_E-siliculosus-1a_F_contig1136.900.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: D8LDQ1_ECTSI (Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDQ1_ECTSI) HSP 1 Score: 176 bits (445), Expect = 1.480e-49 Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1
Query: 298 DSSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGPPGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWGGVFK 552
DSSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGPPGGQLMTTT+VDNFPGFPAGVTGPDLMNGMRDQA RWGGVFK
Sbjct: 12 DSSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGPPGGQLMTTTDVDNFPGFPAGVTGPDLMNGMRDQALRWGGVFK 96
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A6A1WAI7_9ROSI (Thioredoxin reductase NTRC n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WAI7_9ROSI) HSP 1 Score: 129 bits (324), Expect = 8.970e-35 Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 1
Query: 301 SSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
SS+ DVEN+VIIGSGPAGYTA+IYA RANLKP+ FEG VG PGGQLMTTTEV+NFPGFP G+TGPDLM+ MR QA RWG
Sbjct: 80 SSAKDVENLVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 160
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A8J4R529_9ROSI (Pyr_redox_2 domain-containing protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4R529_9ROSI) HSP 1 Score: 126 bits (316), Expect = 8.550e-34 Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 301 SSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
S + ++ENVVIIGSGPAGYTA+IY+ RANLKPL FEG VG PGGQLMTTTEV+NFPGFP G+TGPDLM+ MR QA RWG
Sbjct: 56 SPAKNIENVVIIGSGPAGYTAAIYSARANLKPLVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 136
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: M1CLP3_SOLTU (Thioredoxin reductase n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1CLP3_SOLTU) HSP 1 Score: 128 bits (321), Expect = 9.380e-34 Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 301 SSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWGG 543
SS+ +EN+VI+GSGPAGYTA+IYA RANLKP+ FEG VG PGGQLMTTTEV+NFPGFP G+TGPDLM+ MR QA RWGG
Sbjct: 94 SSAQGIENLVIVGSGPAGYTAAIYAARANLKPVVFEGFQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWGG 175
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A7S4DIX8_HETAK (Thioredoxin reductase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIX8_HETAK) HSP 1 Score: 132 bits (332), Expect = 1.110e-33 Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query: 301 SSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGPPGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
+ L+VENVVIIGSGPAGYTA++YA RANLKP+ FEG+ VGPPGGQLMTTTEV+NFPGFP G+TGP+LM MR QA +WG
Sbjct: 48 AKQLEVENVVIIGSGPAGYTAALYAARANLKPVVFEGVTVGPPGGQLMTTTEVENFPGFPDGLTGPELMTNMRLQAEKWG 127
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A6A6KMS0_HEVBR (Pyr_redox_2 domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KMS0_HEVBR) HSP 1 Score: 124 bits (312), Expect = 3.140e-33 Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 316 VENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
VENVVIIGSGPAGYTA+IYA RANLKP+ FEG +G PGGQLMTTTEV+NFPGFP G+TGPDLM+ MR QA RWG
Sbjct: 28 VENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGVPGGQLMTTTEVENFPGFPEGITGPDLMDRMRRQAERWG 103
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A835ZEJ8_9STRA (Thioredoxin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ8_9STRA) HSP 1 Score: 132 bits (331), Expect = 6.400e-33 Identity = 63/80 (78.75%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 301 SSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGPPGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
+S L VENVVIIGSGPAGYTA+IYA RANLKPL FEGL GPPGGQL+TTTEV+NFPGFP GV+GP LM MR QA RWG
Sbjct: 12 ASGLAVENVVIIGSGPAGYTAAIYAARANLKPLLFEGLRSGPPGGQLVTTTEVENFPGFPEGVSGPQLMANMRAQAERWG 91
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A096P8S8_OSTTA (Thioredoxin reductase n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P8S8_OSTTA) HSP 1 Score: 132 bits (332), Expect = 7.250e-33 Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 1
Query: 313 DVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWGGVF 549
DVENVVIIGSGPAGYTA+IYAGRANL+PL FEG G PGGQLMTTTEV+NFPGFP GVTGPDLM+ MR QA RWG V
Sbjct: 58 DVENVVIIGSGPAGYTAAIYAGRANLRPLVFEGFQAGGVPGGQLMTTTEVENFPGFPEGVTGPDLMDKMRQQAERWGAVM 137
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A5P1EP54_ASPOF (Pyr_redox_2 domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EP54_ASPOF) HSP 1 Score: 126 bits (317), Expect = 9.130e-33 Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 301 SSSLDVENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
SS VEN+VIIGSGPAGYTA+IYA RANLKPL FEG +G PGGQLMTTTEV+NFPGFP G+TGPDLM+ MR QA RWG
Sbjct: 19 SSYAGVENLVIIGSGPAGYTAAIYAARANLKPLVFEGYQIGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 99
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Match: A0A835H6C1_9MAGN (Pyr_redox_2 domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835H6C1_9MAGN) HSP 1 Score: 124 bits (311), Expect = 9.150e-33 Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 316 VENVVIIGSGPAGYTASIYAGRANLKPLCFEGLNVGP-PGGQLMTTTEVDNFPGFPAGVTGPDLMNGMRDQASRWG 540
VEN+VIIGSGPAGYTA+IYA RANLKP+ FEG VG PGGQLMTTTEV+NFPGFP G+TGPDLM+ MR QA RWG
Sbjct: 72 VENLVIIGSGPAGYTAAIYAARANLKPVVFEGYQVGGVPGGQLMTTTEVENFPGFPDGITGPDLMDRMRRQAERWG 147 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1136.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1136.900.1 >prot_E-siliculosus-1a_F_contig1136.900.1 ID=prot_E-siliculosus-1a_F_contig1136.900.1|Name=mRNA_E-siliculosus-1a_F_contig1136.900.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=184bp LLTTPCAATEEMVSRRYRRLAVATASFAASLAASSNRCCCCDAFLSAPRSback to top mRNA from alignment at E-siliculosus-1a_F_contig1136:34451..36278+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1136.900.1 ID=mRNA_E-siliculosus-1a_F_contig1136.900.1|Name=mRNA_E-siliculosus-1a_F_contig1136.900.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1828bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1136:34451..36278+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1136:34451..36278+ >mRNA_E-siliculosus-1a_F_contig1136.900.1 ID=mRNA_E-siliculosus-1a_F_contig1136.900.1|Name=mRNA_E-siliculosus-1a_F_contig1136.900.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1136:34451..36278+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |