mRNA_E-siliculosus-1a_F_contig1136.898.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1136.898.1
Unique NamemRNA_E-siliculosus-1a_F_contig1136.898.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: D8LDP9_ECTSI (Kinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP9_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 7.390e-97
Identity = 157/165 (95.15%), Postives = 158/165 (95.76%), Query Frame = 2 
Query:  149 MDLTRGTASGKGDGGGMSKTPQGGRAGGTATLPLAALECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR 643
            MDLTR TASGKGDGGGMSKTPQGGRAGGTATLPLAALECAVCL LVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHN     AEDQPEDVMLA+IARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR
Sbjct:    1 MDLTRETASGKGDGGGMSKTPQGGRAGGTATLPLAALECAVCLFLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNS----AEDQPEDVMLANIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRR 161
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A6H5KHS7_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHS7_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 6.880e-81
Identity = 141/287 (49.13%), Postives = 191/287 (66.55%), Query Frame = 2 
Query:  257 LECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYV-----PNYSNYVATI---GDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGPFMSEMIERYGEIPASAEGFSQWAAAVLPMPVREKHAMLSGRSTADRLVAC 1093
            L C  CL L+ EPVSL CGH+FCRVCLV  LRR  K+CP+C A CH R+  VAEDQP++VMLA IA++ FPEL   RL+E EAE+ KF   LP F+Y+VP+FPG++L +H FEPRYKLMM+R++NTSRRFAYV     P+ ++        G +AL A + E EFLSD RV++K KL  R TV++ FVE GT  LH+C++E   D+P    Q G A   + +LH R + +    +GPF  +++E +G +P  A G S W A++LP    +KH+++  R T  R+ AC
Sbjct:   27 LACPACLQLLAEPVSLPCGHTFCRVCLVKELRRKPKECPSCHATCHTRQ--VAEDQPQNVMLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYSVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVPSTNDDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDFVEAGTGNLHYCQLEPFDDDPL---QEGGAGE-LTDLHTRAKTICNGFLGPFKGQLVEAHGRMPEDAVGLSMWMASLLPFYPPDKHSLVRSRCTRRRMRAC 307
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A835ZAH9_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAH9_9STRA)

HSP 1 Score: 265 bits (677), Expect = 3.360e-78
Identity = 147/327 (44.95%), Postives = 207/327 (63.30%), Query Frame = 2 
Query:  329 VCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGPFMSEMIERYGEIP--ASAEGFSQWAAAVLPMPVREKHAMLSGRSTADRLVACERHLAPLTTGRGGGVPPALAEPRDVTAVADAFTRHISDAVHTPESVAAAVSAGPGDGSREEEGGDAGSDE 1303
            +CLV TL R KK+CPTCRAVCHN     A+DQPE+VM+A IAR  FP+L   RL+E + E+    ++ P+FYYNVPMFPGE L LHLFEPRY+LMM+R+++T+RRF YVPNY+NY A+IGDVAL+A++ +C+F SDGR  L A LI R  + DH+VE+GT GL++C++E   DEP    +    +  V+ +       +   +GP  S++++ +GE+P  A  + FS + A VLP+   EKH+ML+  +T +RL AC   L     GR GG  P         A+A    R ++  +   E+ AAA +A      ++   GD+GS E
Sbjct:    1 MCLVKTLTRTKKRCPTCRAVCHN----CAQDQPENVMVAQIARAAFPQLYLERLRETQTEKAALRSIHPIFYYNVPMFPGEILSLHLFEPRYRLMMRRIIDTTRRFVYVPNYTNYEASIGDVALIAEVKDCDFQSDGRCYLSATLIGRSRITDHYVEDGTHGLNYCQLETLVDEPIQPHEARFVTTLVQPI----ANFVSSVLGPIHSDVVKTHGEMPPVAREQEFSLFIAGVLPLGNAEKHSMLACTNTLERLRACAAAL-----GRMGGDNPLRV------ALAHVLQR-VNAEIEISEAAAAAEAA------QQRASGDSGSSE 301
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A6U2J5U5_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2J5U5_HEMAN)

HSP 1 Score: 254 bits (648), Expect = 3.210e-74
Identity = 123/282 (43.62%), Postives = 185/282 (65.60%), Query Frame = 2 
Query:  257 LECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGP---FMSEMIERYGEIPASAEGFSQWAAAVLPMPVREKHAMLSGRSTADRLVAC 1093
            LEC+VCL L+CEPV+  CGHSFCR CLV TLR+NKKKCP+CRA+C    +   E   E + L+S+A+  FP+    R+ EV+AE+  + T+LP+F+YN  +FP   L L+LFEPRYK+M+ R+V +SRRFAY+P +  Y A +GD+ ++A++ + EFL+DGR  L+AK   R T+ + ++E+GTQGLH+C+V+   D   ++E    A   +EE  +   +L    +        E+  +YG  PA +E FS W +++LP+P  +KH +L+  +T +RL  C
Sbjct:   14 LECSVCLQLLCEPVTTPCGHSFCRPCLVGTLRKNKKKCPSCRAIC----QIEPETHSETIALSSVAKAVFPKAYQQRILEVQAEKASWDTILPIFFYNDTLFPFSPLALNLFEPRYKVMLHRIVESSRRFAYLPKFDTYQANVGDMGVIAEITDIEFLADGRAHLQAKCRDRFTIKEAWIEDGTQGLHWCKVDLVNDGVSASESERQA---LEEAVSDCEQLFASVMARSSHLAREIESQYGSRPADSERFSFWLSSILPVPYGDKHCLLTCLNTTERLTLC 288
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A482RY16_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY16_9ARCH)

HSP 1 Score: 253 bits (645), Expect = 5.570e-74
Identity = 124/252 (49.21%), Postives = 172/252 (68.25%), Query Frame = 2 
Query:  257 LECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGPFMSEMIER-YGEIPASAEGFSQW 1009
            L+C++CLSLVCEP+S+SCGH+FCRVCLV  LRR+KK+CPTCR VCH      AE+  E++M+ ++A    PE   +RL E E E+  +  + P+FYYN  +FPG  L L LFEPRYKLMM+R+++T+R FAYVPN++NY A +GDVALV +L E EFL+DGR LL+  L+SRQ + +H+VE+GTQGLH+CR+E+  D+    ++   A    ++L    R L+    G     ++E+  G  P   E FS W
Sbjct:   37 LDCSLCLSLVCEPISISCGHTFCRVCLVKALRRHKKQCPTCREVCH----VSAENAAENIMVKTLAMALDPETYRSRLLEAEGEKSSWTALYPIFYYNSILFPGNKLSLVLFEPRYKLMMRRIIDTTRSFAYVPNFTNYHARVGDVALVVELKEVEFLADGRCLLEGLLVSRQRIAEHYVEQGTQGLHYCRLESLRDDGLGEQRRQQADYLSQQL----RTLLASLGGGSSRRLLEQGLGSPPQDLENFSLW 280
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A4D9DDG8_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDG8_9STRA)

HSP 1 Score: 254 bits (648), Expect = 4.850e-73
Identity = 141/303 (46.53%), Postives = 186/303 (61.39%), Query Frame = 2 
Query:  242 LPLAALECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVI-DHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGPFMSEMIERYGEIPA--SAEGFSQWAAAVLPMPVRE-KHAMLSGRSTADRLVACERHLAPLTTGRGGGV 1138
            L L  LEC VCL L+CE V+  CGHS CR+CLV  L+R + KCP CRAVC       AED  E  +L  +A+  FP L   RL+E   ERE    +LP+F+YN+P+FPGE+L+LHLFEPRY+LMM+R+VN SRRFAYVPNYSNY A  GD+AL+A+L E  F+ DGR  L+A++  R T+  D +VE+GT GL +CR++   DE P + +   A  +  E        I        + +++RYGE+P   + E  S W AAVLP   R+ KH +L    T+ RL  C   L  L   RG G+
Sbjct:   89 LTLGDLECGVCLGLLCEAVTTPCGHSLCRLCLVRALQR-QTKCPVCRAVCM----INAEDHAETRLLTRLAKRAFPALYEQRLEETRQEREALKLLLPIFFYNLPIFPGEALRLHLFEPRYRLMMQRIVNGSRRFAYVPNYSNYRAKAGDIALIAELKEVRFMRDGRSELEARIAGRFTIAEDPYVEDGTGGLSYCRLKELRDESPKSAEASQALRQASEKAREMAHAIFLERRDIKAVVVDRYGEMPGPQTPEALSLWIAAVLPTENRQIKHDLLVSTDTSHRLEVCMSKLQAL---RGAGM 383
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A7S0CSC1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSC1_9EUKA)

HSP 1 Score: 236 bits (601), Expect = 3.940e-67
Identity = 128/299 (42.81%), Postives = 189/299 (63.21%), Query Frame = 2 
Query:  257 LECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGPFMSEMIERYGEIP--ASAEGFSQWAAAVLPMPVREKHA---MLSGRSTADRLVACERHLAPLT--TGRGG 1132
            L+C++CL +VCEP+++ CGH+FCR CL   ++R KKKCP CRAVCH            +VMLA+IA+ CFP+    R +E +A ++KF T LP+F+YN  +FPG  L LHLFE RY+ M+ R V+++R+F Y+PN+S+Y AT GDV L+A + ECEFLSDGR LLKA L+ R  + + +VEEGTQGLH+C+ +A  +E     +  D    V+E+HA+   ++  A G    +++   G+ P  ++A  FS W +A++ M  R   +   +L    TA+RL   +  L+ +   T R G
Sbjct:   30 LQCSLCLGIVCEPITIPCGHTFCRSCLYLAMQRTKKKCPNCRAVCH----VDPSSHSVNVMLANIAQKCFPKEYKKRAEECKALKQKFQTTLPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRQFLYLPNFSDYKATAGDVGLLAYVDECEFLSDGRALLKATLVKRVVITNSWVEEGTQGLHYCQYQAY-EETDKTVKEAD----VKEIHAKVNVILQSAPG-LREQIVNHIGKQPPISNATQFSFWISALVTMITRAGKSGMPLLKTTKTAERLKLVKTVLSQIVSQTSRAG 318
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A6B2LCC5_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCC5_9EUKA)

HSP 1 Score: 221 bits (563), Expect = 4.120e-62
Identity = 121/285 (42.46%), Postives = 177/285 (62.11%), Query Frame = 2 
Query:  257 LECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGD----ASARVEELHARTRRLILDAIGPF-MSEMIERYGEIPASAEGFSQWAAAVLP----MPVREKHAMLSGRSTADRL 1084
            ++C +CL+++ EP+S+ CGH+FCR CLV   +R +KKCP CRAVC       A  Q E+V LASI +TCFP+  A RLKEVE  ++ +   LP+F++N  +FPG  L+LHLFE RYKLM+KRV+  +R+F Y+PN++NY A+ GDV +VA+++EC FL DGR LL+A+++ R  V D +VE+GT  L +C+ E   DEP +++Q  +    A+  +E      +RL  + I  F + E +  + E  ++ E  S W    L     M    K A+L   S   RL
Sbjct:    1 MDCTICLNMLVEPISVPCGHTFCRTCLVAAQQRAQKKCPVCRAVC----VIDATAQKENVQLASILKTCFPKQYAERLKEVEETKKTWKQNLPIFFFNDTLFPGGVLKLHLFEERYKLMIKRVLEGNRKFVYLPNFTNYKASKGDVGVVAEVLECRFLHDGRALLQARIVERAVVADSWVEDGTGNLAYCQYELFKDEPENDDQLQELLVTANLSLERFKGFVQRL--EPIRQFTLKEQLGGFPEERSTPEAISWWLINTLSRFDGMSTSTKVALLKSNSFKWRL 279
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: A0A6V3MPG8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3MPG8_9EUKA)

HSP 1 Score: 217 bits (552), Expect = 4.550e-60
Identity = 128/323 (39.63%), Postives = 189/323 (58.51%), Query Frame = 2 
Query:  224 AGGTATLPLAALECAVCLSLVCEPVSLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRL--ILDAIGPFMSEMIERYGEIPASAEG--FSQWAAAVLPMPVR---EKHAMLSGRSTADRLVACERHLA----PLTTGRGGGVPPALAEP 1159
            A  +A++    L C +CL+LVC+P+++ CGH+FCRVCL   ++R+KKKCP CRAVCH            +VMLA IA+ CFP+    RL E + E+EKF +  P+F+YN  +FPG  L LHLFE RY+ M+ R V+++R+F Y+PN+++Y A  GDV L+A + ECEFL DGR LLKA +  R  V + +VEEGTQGLH+C+     +E        D +   EEL+A  +++  + + +     +++   G+ P       +S W AA + M  R   +  ++L    T++RL   +R L+    P    R  G   A AEP
Sbjct:   22 ASSSASIEADMLTCPLCLNLVCQPITVPCGHTFCRVCLYMAMQRSKKKCPNCRAVCH----VEPASHAVNVMLAQIAQKCFPKQYEQRLLESKQEQEKFESTSPIFFYNNCLFPGCLLHLHLFEQRYRHMINRCVSSNRKFIYLPNFTDYKAKTGDVGLLAYIDECEFLPDGRALLKATIQKRVKVTNTWVEEGTQGLHYCQFHPYVEE--------DKTVDEEELNAVHKQVNGLFNHVPGLKDQIVHHIGKQPPLTNPVLWSFWLAAFVTMVSRSGVQSMSLLKTTKTSERLKQSKRLLSQVSLPGRNNRNSG--QAAAEP 330
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Match: D8LI81_ECTSI (Lon N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI81_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.350e-54
Identity = 104/227 (45.81%), Postives = 143/227 (63.00%), Query Frame = 2 
Query:  437 MLASIARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEPRYKLMMKRVVNTSRRFAYV--------PNYSNYVATIGDVALVAQLVECEFLSDGRVLLKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEELHARTRRLILDAIGPFMSEMIERYGEIPASAEGFSQWAAAVLPMPVREKHAMLSGRSTADRLVAC 1093
            MLA IA++ FPEL   RL+E EAE+ KF   LP F+YNVP+FPG++L +H FEPRYKLMM+R++NTSRRFAYV         N        G +AL A + E EFLSD RV++K KL  R TV++ FVE GT  LH+C++E   D+P    Q G A   +E+LH R + +    +GPF  +++E +G +P  A G S W A++LP    +KH+++  R T  R+  C
Sbjct:    1 MLAQIAKSLFPELLERRLRETEAEKAKFELCLPAFFYNVPVFPGQTLCVHFFEPRYKLMMQRIINTSRRFAYVLPAPVQSTNNDDRNTDQQGRIALEAHVCEAEFLSDDRVMVKIKLAGRHTVVEDFVEAGTGDLHYCQLEPFDDDPL---QDGGADE-LEDLHTRAKTMCNGFLGPFKGQLVEAHGRMPEDAVGLSMWMASLLPFYPPDKHSLVRSRCTRRRMRTC 223
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1136.898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP9_ECTSI7.390e-9795.15Kinase, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KHS7_9PHAE6.880e-8149.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZAH9_9STRA3.360e-7844.95PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6U2J5U5_HEMAN3.210e-7443.62Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A482RY16_9ARCH5.570e-7449.21RING-type domain-containing protein n=1 Tax=archae... [more]
A0A4D9DDG8_9STRA4.850e-7346.53RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S0CSC1_9EUKA3.940e-6742.81Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6B2LCC5_9EUKA4.120e-6242.46RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A6V3MPG8_9EUKA4.550e-6039.63Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
D8LI81_ECTSI3.350e-5445.81Lon N-terminal domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1136contigE-siliculosus-1a_F_contig1136:12726..20575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1161
Model size2553
Exons7
Ec32 orthologEc-19_001490.1
Ec32 ortholog descriptionZinc finger, C3HC4 RING-type
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03400,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EC2.3.2.31
EggNOG OGsCOG2802@1,KOG4159@2759
EggNOG free text desc.histone H2A-K13 ubiquitination
GOsGO:0000122,GO:0000151,GO:0000209,GO:0001775,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010212,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0016043,GO:0016064,GO:0016444,GO:0016445,GO:0016447,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019724,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031491,GO:0031593,GO:0031974,GO:0031981,GO:0032182,GO:0032446,GO:0032501,GO:0032502,GO:0032784,GO:0032785,GO:0032879,GO:0032880,GO:0032991,GO:0033522,GO:0033554,GO:0034243,GO:0034244,GO:0034641,GO:0034644,GO:0035518,GO:0035861,GO:0036211,GO:0036351,GO:0036352,GO:0042113,GO:0042393,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045190,GO:0045321,GO:0045739,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046649,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070530,GO:0070534,GO:0070535,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0104004,GO:0140030,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1990234,GO:1990391,GO:2000112,GO:2000113,GO:2001020,GO:2001022,GO:2001141
KEGG koko:K20779
Seed eggNOG ortholog2880.D8LDP9
Seed ortholog evalue1.3e-80
Seed ortholog score307.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.5411372-UTR-E-siliculosus-1a_F_contig1136:12725..139691622927646.5411372-UTR-E-siliculosus-1a_F_contig1136:12725..13969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1136 12726..13969 -
1696318623.1969438-UTR-E-siliculosus-1a_F_contig1136:12725..139691696318623.1969438-UTR-E-siliculosus-1a_F_contig1136:12725..13969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1136 12726..13969 -
1622927646.6426356-UTR-E-siliculosus-1a_F_contig1136:20427..205751622927646.6426356-UTR-E-siliculosus-1a_F_contig1136:20427..20575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1136 20428..20575 -
1696318623.2712862-UTR-E-siliculosus-1a_F_contig1136:20427..205751696318623.2712862-UTR-E-siliculosus-1a_F_contig1136:20427..20575Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1136 20428..20575 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.5592043-CDS-E-siliculosus-1a_F_contig1136:13969..143291622927646.5592043-CDS-E-siliculosus-1a_F_contig1136:13969..14329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 13970..14329 -
1696318623.209461-CDS-E-siliculosus-1a_F_contig1136:13969..143291696318623.209461-CDS-E-siliculosus-1a_F_contig1136:13969..14329Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 13970..14329 -
1622927646.572861-CDS-E-siliculosus-1a_F_contig1136:15163..154001622927646.572861-CDS-E-siliculosus-1a_F_contig1136:15163..15400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 15164..15400 -
1696318623.21957-CDS-E-siliculosus-1a_F_contig1136:15163..154001696318623.21957-CDS-E-siliculosus-1a_F_contig1136:15163..15400Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 15164..15400 -
1622927646.5847282-CDS-E-siliculosus-1a_F_contig1136:15678..157481622927646.5847282-CDS-E-siliculosus-1a_F_contig1136:15678..15748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 15679..15748 -
1696318623.2305214-CDS-E-siliculosus-1a_F_contig1136:15678..157481696318623.2305214-CDS-E-siliculosus-1a_F_contig1136:15678..15748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 15679..15748 -
1622927646.5972955-CDS-E-siliculosus-1a_F_contig1136:16059..161561622927646.5972955-CDS-E-siliculosus-1a_F_contig1136:16059..16156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 16060..16156 -
1696318623.238816-CDS-E-siliculosus-1a_F_contig1136:16059..161561696318623.238816-CDS-E-siliculosus-1a_F_contig1136:16059..16156Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 16060..16156 -
1622927646.6075778-CDS-E-siliculosus-1a_F_contig1136:17149..172831622927646.6075778-CDS-E-siliculosus-1a_F_contig1136:17149..17283Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 17150..17283 -
1696318623.2459657-CDS-E-siliculosus-1a_F_contig1136:17149..172831696318623.2459657-CDS-E-siliculosus-1a_F_contig1136:17149..17283Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 17150..17283 -
1622927646.621298-CDS-E-siliculosus-1a_F_contig1136:17828..180241622927646.621298-CDS-E-siliculosus-1a_F_contig1136:17828..18024Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 17829..18024 -
1696318623.2536697-CDS-E-siliculosus-1a_F_contig1136:17828..180241696318623.2536697-CDS-E-siliculosus-1a_F_contig1136:17828..18024Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 17829..18024 -
1622927646.6323597-CDS-E-siliculosus-1a_F_contig1136:20360..204271622927646.6323597-CDS-E-siliculosus-1a_F_contig1136:20360..20427Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 20361..20427 -
1696318623.2618773-CDS-E-siliculosus-1a_F_contig1136:20360..204271696318623.2618773-CDS-E-siliculosus-1a_F_contig1136:20360..20427Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1136 20361..20427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1136.898.1prot_E-siliculosus-1a_F_contig1136.898.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1136 13970..20427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1136.898.1

>prot_E-siliculosus-1a_F_contig1136.898.1 ID=prot_E-siliculosus-1a_F_contig1136.898.1|Name=mRNA_E-siliculosus-1a_F_contig1136.898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=387bp
MDLTRGTASGKGDGGGMSKTPQGGRAGGTATLPLAALECAVCLSLVCEPV
SLSCGHSFCRVCLVNTLRRNKKKCPTCRAVCHNRREFVAEDQPEDVMLAS
IARTCFPELAAARLKEVEAEREKFMTVLPVFYYNVPMFPGESLQLHLFEP
RYKLMMKRVVNTSRRFAYVPNYSNYVATIGDVALVAQLVECEFLSDGRVL
LKAKLISRQTVIDHFVEEGTQGLHFCRVEARGDEPPSNEQHGDASARVEE
LHARTRRLILDAIGPFMSEMIERYGEIPASAEGFSQWAAAVLPMPVREKH
AMLSGRSTADRLVACERHLAPLTTGRGGGVPPALAEPRDVTAVADAFTRH
ISDAVHTPESVAAAVSAGPGDGSREEEGGDAGSDEG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1136:12726..20575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1136.898.1 ID=mRNA_E-siliculosus-1a_F_contig1136.898.1|Name=mRNA_E-siliculosus-1a_F_contig1136.898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7850bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1136:12726..20575- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTAGACGGTAGACGGGTCATCTGGTCATCTCTTGGTGAGCCAATGAGGTG
AGGCGCTGACCTTTAAAATCCAACGAAATCCAACGGCACATCTACGAAGA
TCCCATCGCATCATCCAGCGTGCTTGTTGTGTGACACACACGCGCCGCAT
GGACCTTACGAGGGGGACCGCCTCGGGGAAGGGCGATGGCGGAGGGATGA
GCAAGACACCTCAAGGTTCGGAGACGTTGTCCGTGTTTTTTTTTGTTCTG
TGGTTGGTCGGTGAACGCTCTGACCAAATCGATTGTTGACTTGATGTCTC
CAAAAAGGTGCCCGAGTTTTCTGTGTCCACTCACACATTATTTGGGCCGC
TGTAGTTGAACACCTCGACACCTCCTCGCGAAGCGTCCAGGAGCAAGCGT
TGACTGCGCGTGCCATTTCTTCAAGCAGGGGTCATCACCTGTCTAGCTCT
GACTAGCTATCATGGACTCTGTGACGTTTGCAGCGTTGGTGTTCGCAGCT
TCATTGGCAGAGGATTTCAGGCTGTAGCGCCGAAAAAGTGTGGTACAAAC
ACAGCGGTGTGTCCAGATCCATCTCCTCTTTCTTCAGAGTTTTCGGCCTC
CCGCGCCACCGCTGCGATGGCCCAAACTGTCCTACGTTGTGCGGAAACGT
TCCAGGCTGGGTTCTCGCAGGCCAGGGAAAAAGTTCCTGCGCGATTGGCC
TTGTAATAGTTTCGCAATTGAGTGCAAACGGTCTGAAAATGTCCCCGGGA
TTCGTTGAAATCTCCCCGGTCCAAGAGGCACATGAGTCATACTGCGTCGG
CACCCGTTCGTGTAACAACCACGAGCTGACAACGCCGCACAGCGGCGTCG
AGGCCCAGGCAACGAGCTTCTACTGGAACGAGTGCATGTCAGGACTACGC
TAGCTCTGGCGGATGCGTGACCCTCGTCTAGGACCGACCTACCCCCACCC
TCGTTTGTATGATAGCTGGAGATCTACTGCTGTACGTTGTATGAAGCCGG
TGCAAATTTACAAATCAGAGCATCCTACCTGCTAGGAGCAATATGTATCT
TGGCGCTTGTAGAAAATCATCAACTCCCCACCGTACTTGCTCAGTGATTT
TTCGTGGTAGCCATCCTCACCAGCATATATATATCGGAGCATGGATCGTG
TGCAAGAGAGTCACCAGTGCCAGCACTCCTCTTGTGTCTGTCTCTCTCTG
TCTCTCTGTCTCTCTTCTCTCTCGAGGGGCATATGATAGATGATAGAATG
CGGAAGAAAGAAGTCCACAAGTTTGACTTTCGTTACCACTAAACTAACCG
AACACCGAATACTGCTCTGTTGCTTGCTACTGTATTTTTTTTTGCAGCAG
CTGTTGTGTGCTTGTTTGCTTTCTCCTTCGAATAACATCGGCCATGATAA
ATTCAAAGACGCCAGTTTATGGCGAGAACTGTGAGCGCTCGTTTCCTAAT
TAATTTCTGGCGCCAGTCTGTTATGGACCTTCTCGTGTACCTTGCAGTAC
AGTACTTGATAGTTTGACGTATCAGCCGGATTCTAGCAGCCGCACTTTCG
TTTAATTTTTCGCCCCACTTTTCTTTTGAAGTAATTTTTTTTCCCTGGGG
AGGGTTGAGCCCGTCCCTTTCCCTCGTCGACCTTGAGCGGAAGAAGAGCG
TGTATGCTCACGAGTCAATCGCTTTCTCAATGCAAACTGCAGAGTTCTCT
TTCCACTCCGGAGAGAGGATCGAACTCCAAACCTGCTACTTACAGAGGTG
TGTACATACGAGGTACTGCTAGACCACCGGGGCGAAAATTGACCACCCAT
TCGAAATATCAGCCCGGCGGGGAACACGCAAGTTGAAGTCTTCACCTCAA
GTTTTGAGGAACTCTTGTTGGATGGTGGGCTTACGTTCAAGCCGTGGTAC
CGAAACTTGAGGAGCCAGTGAAGCTTACCGGGCCAAATTTGCCGGGGCCT
GTGCCGTTGGGTGTCTTCCTTCACTAGCAGTTGGATTTCGGTTTGTAAAA
AATAATACCTCTATCCCGGACTCTAAACTGAGATATAGAGATAAAAAATC
GTTGTGCATTTAACAAAAAATAAGCGAAGGAATAACTGCAAGCGTCATGA
CCCACGTGAAATGCCGCTTTGTTCGCGTCGTTCACAGCAGTCGCAAAGCG
GGTGTTGACGTGTTGACGGCAAGAAGAAACATCGTAGCGTAATTTCCGTC
ATCATGAATATGCCCCTCCCTGCCAATGAAGATATCAATCTACATGCAGC
GTCTTCCACATGCGTATGCGCCGGCCTAGCCTCGAATCTCTATCCGACGC
TCTCGATATTCGCCCACTTATTTTTTCTTTTCGTAGTATGAAACAACGAT
TCATTTTCTATCCATGGTAGAAAAGAGTCTACGTTAGGTTAGCAATGAAA
ACCATCGCGTCAGCCGAGACTAGCTGTATTTCTACGGTTTCCCGACCAGC
ACACAACGATATCTCCCCTCCCGGTGGGTTGCAGGCTCAACTGTTTTGTT
TGTTTTTCGTTTGTACCATTTGTTCTGTTTTTTCTTGTTCTTTTCGTGCA
GGTGGCCGCGCCGGCGGCACCGCCACTCTCCCTCTGGCTGCCCTGGAGTG
CGCCGTATGCCTGTCTCTGGTGTGCGAGCCCGTGAGCCTCAGCTGCGGGC
ACTCGTTCTGCAGGGTCTGCCTCGTCAACACCCTACGCCGGAACAAGAAG
AAGTGCCCCACGTGTCGAGCGGTGTGTCACAACAGGCGAGAATTTGTGTT
CTTAATCGTCTTGTCCCCCCCCACAAAGCCATCGATAATTAATAACAGAA
TGATAAATTGGTCAGCCGGTTAGCGCGGTCGATGCTACGGTAGTAGTAAA
CACACACACACACATATCATCGCACGTTGCCCATCACCTCTTTTCTTTGC
GCTCAAAATTGATATGCGTGTGACCAAGTTTTTCATGCCGGTGATGTGAC
GCCGTAGGTTGTTTCTACAAGAAAACCTCAAAATATTCGGGCACAAATTT
CAAGTGTACGTGGAGCGCAGTGATTTCCGCGCGAACTTGTGCGCGGATTC
GCTTGTCTCAAAAATTGCACCATCGCAGCTCCTACATATGTAAAATGACA
GCTGGGGGCGCGATGTTTACATGGTTTGTTCGAAGGATCAATGTTCATGT
TTTGCTGTAGATCTTATATATAGACCAAATATCTTCGAACTCGTTGTCAG
CAAAACATCACCTCTCGCTTGCTTGTTTGCACACGTTCATCGCACATGAA
CCAACAAGTGCAAAAACGAACATTGCTATAATAATTCCACAGTGCGGAAG
ATCAGCCGGAAGACGTGATGCTCGCCAGCATCGCCCGAACCTGCTTCCCC
GAGCTCGCGGCGGCCCGGCTGAAGGAGGTGGAGGCGGAGCGGGAGAAGTT
CATGACCGTGCTGCCAGTGTTTTATTGTGCGTCAGTGTCACGTCGTTCTA
GTGGTGGTGGAGCGTAAGGTGGTTTGGTGGCCTGATCCGACAGCTTGTTG
TAGTGTTCCCGCGCCCTGTTGAGTAGGATAGCGTCTTTTAAAGTTGTGAC
GTTGAGTGTACGCTGAAGAGGAGCTTGATGACGTAGTCTGGTGTGCGTAT
CGGCAACCGGCGTTTTGGGGTCCCGACACTAGCGTGTCGGCACGCGGAGG
AGCGGAGGTGAACATTCCCCTCTGCCCCACGCTCGGGCCTTGTTCTAGCT
TGTAACAGCTCTTTGAGTCGGCGGTTATCGTTGGCATTTTGCACCGTGGC
ATGCTGCCATTGCTCTCATCGCTTTGTTCGTCAACACCGCGGCATCCTTA
ACACGGCCGTTGTTTCGTAGAGGAACTTCTGTTTTTAGTCATTGGCCGTT
TTAACTTTCTTCCTCTGGGCAAGAGGGTCCTCGCAACGTTACTTCGGTGT
GCCCCCTCTAGTCAGCGGATGATGCCACTAGTCAAATGTGGTCCTCTCCC
GGTTAGCCGTCGTCATCCGAACCCGTCGTCATCCGAACCCGAACAACAGC
TTCTCGGCTTCGTTTTTTTCCCAGAGCATGAGAGACTGCTGTTGCTACTG
CCGCCGTTGCCGCGGTCCCGTTTTTTTTTTCTTCTTCCATAGTCAAGAGA
AATTTTTGGTGTGTCGCTACAATAGCAGCATCACAACATCCTCCATCAAC
CACCGCCCCTTTTTACGCCTGAAAAATCGCCTCATTATCCACCACTACTT
CTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCTCCCCCCCCCCCCTCCCTCTCTCCCCTCCCCCCNNNNNNNNN
NGGCCGGGATTTCACCGGTGTCTCCTCCCCACCAAAAAACCCCCCCCTTT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGTTCTTCTCCCAATC
TTGTATCGAATTGTTCCAGACAACGTGCCCATGTTTCCCGGAGAGAGCCT
GCAGCTGCACCTGTTCGAGCCGCGCTACAAGCTCATGATGAAGAGAGTCG
TCAACACCTCGCGAAGGTAGGCGCTATGTGCTGCTGTCCTACACGTTGCG
ACCGGGAACTAAAGTGTTTAACTCGTTGTCTCCAGGGTTTTGGGGTCTGC
TGTGCCGATGGAAAATGCACGCAGAGAGGCGAGTGCACACGAGCGATCGA
CGCAATCAATCACACAGACAACCGTTACCTCCTGACCTTCTACCCCACCC
TCCAATGTATTCCCCGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCTTTC
CCCCGCGCCCCCCCCCCCCCCCCCCAGGTTCGCGTACGTTCCCAACTACT
CGAACTACGTCGCGACCATCGGGGACGTAGCGCTCGTCGCCCAGCTGGTG
AGACAAATGCCGCCACGCCGTGCAAACGCGCAGCTTCTGGCGTTGTGTGG
GTACAGTAGTTCCTCGTTGAGTAGGACACCGGCATTCTGTTTCCTCACAA
ACCTTGGCCTTGACAACAAGCCATTTGCTCTCCCTCTTTCAAAACAAGTG
AAACGACGATAACCATGAGTCACAAAACCAACCCCTTTTCTCTCGCTCTC
TTTCTCTTTCAAATCAAAACGAAACGGCGACGACACACACACACACACAC
AACAACAACAACGACAACAAAAAAGGTCGAGTGCGAGTTCCTGAGCGACG
GGCGCGTGCTGCTCAAGGCGAAGCTGATCTCGAGACAGACGGTGATCGAC
CATTTCGTTGAGGAGGGCACCCAGGGGCTGCACTTCTGCCGCGTCGAGGC
CCGCGGCGACGAACCCCCCTCGAACGAACAACACGGGGACGCCTCAGCAC
GGGTGGAGGAACTCCACGCGAGGACACGGCGGCTCATCCTGGACGCGATT
GGGCCGTTCATGGTAAGTTATGTATCACGGGTCATTTTTGGAAACAGACA
AAAAATGTGTGGTCTGTCGTTCCCCCGTTCCCTCCTGTCACCCAGATCGC
CACGTCGTTGATGACCGGGGGCTGCAGTTTCTCGCAGCCGGTCAACCATG
TACGCAAAGAGAGAGAGACTCGTAAAATGAAACCAAAGACTTAGGGAGGG
CTGTAGTAGTAGGGGTTGGTTTGTGGAAGGTCCTGATTCTCGGGAAACGG
ATACAAAATACTGTCTGGTGTCATCGGACCCTTCATGGTGAGTGTCATGA
ATGCATACCGTCTAAAACGCAAGGAACGCAAAGACTCGTTAGTAGTACGT
AAACCAACACCTAGGGCGGTAGTAGGGGGGTGACTTTGGACGGTCCTTTT
CTCGGGCAACGGGTAGAATACATCGCGTGCAAAACATATCAATACCCTCA
AGACCTATCGTTAAACCTTTTTGTGTTTGGTTGAAAGCAAGCTTGTACCT
TTTCGAGAGGCAACTGCAGTAGCGCGAGACACGCCCCCACGCCTGCGTGT
GTGTAAGTTCGTCGAGGTAGGCTATGAGTCACCTTCGTTACATTGGCAAA
ATCGATTGCTGCCGACTGTGTGGACCTCCGGCCCGCGTGAATGGTGAACA
GCAGCGCTTTGGCTCGTCCCGTAGAGACGTAGATTTAGCCCGAAGATAAC
ATGTTGAGAATTCGCACGGGTCCTGCCTTCCAGAAAGCCGTGCAAGTAGC
CAACACATCGAACTGTTGTTTTACAAGAGAGACACACACGCTGCTGCGCC
GTATCGCTGTCCTGCGCCATATGTGCCCCCCCCCCCGCAACGGCAGTCGG
AAATGATCGAGAGGTACGGCGAGATCCCAGCGAGCGCGGAAGGCTTCTCC
CAGTGGGCGGCCGCCGTCCTGCCCATGCCGGTGCGCGAGAAGCACGCCAT
GCTCTCGGGGAGGTCCACCGCCGACCGACTAGTCGCCTGCGAGCGCCACC
TGGCGCCCCTCACGACCGGGCGAGGGGGGGGGGTGCCTCCCGCGCTCGCG
GAGCCCCGTGACGTCACCGCGGTGGCCGACGCCTTCACCCGCCACATCTC
CGACGCGGTCCACACGCCCGAGTCTGTGGCGGCGGCAGTGTCCGCCGGCC
CTGGGGATGGTAGTAGAGAAGAGGAAGGGGGCGACGCGGGATCGGACGAA
GGCTGAGGAGGCTTCATCGGCGGTGTGCGCCGGCGGGAACAGAAGCAAGA
GTCACATTTCATTTTTTTTTGTTTTGTTCCGAAGTCCCATGGGGGACGTG
GGGTGAAACGATGGGGGTGTCGTCACCTGCACTGCTACTGCGTCGGCGCA
AGACCGGACTGAATCAATTAACTAGGAGTAGGTTGGCGGTGACGACTTGG
AATTGTTTTGGGCGAGCGGGGTTGGAGGGACGGGGGGACGGTGGTGTGTG
TTCTATAAATAAACGTACAAAAAATCATTTTGTAGGTGCGGGACCGAGTG
GTGTACGCAGGGCAGTCCATAGGGTAAACTAGTAGCTTGCTTGTTTCGGA
TCGAGAGAGGGGTGGTTCTCGAGGAGGGAAATTGTGTGCGTGCGTTGGAA
CGGGGGGGTGGCGATACAACGCGGGTTGGGTGTACCCCTGGGTGTACTTT
GATGTTGTGAAGTTTTGTTTTTTCGTTTGTCGTCAACATTTTTTTTACTC
TTCGTTTCGAGAGAAACGAAAGAGGAAGCCAGAAGAACCGGCGTTCTTCC
AGGTGTGGGGTGTCGCGGATGGGATGTGCCTGCTGAAGGGGGGAGTGGGT
ATATCTTTGAGGCGGTGCCGGCATGTTGCCTCGAGCTGACAACGGGTTGC
TAGGGAGACCAGGCCTACTTATCGGTGTGTGCGAGTGTTGCGTTCTCCGA
AACATGTAGGGGGGGGGGAAAGTGGCGAAGCTTGTTCACTCTTACGACCC
TCGATGAGATATACCCTCGAGAAGTCTCTAATTTCTTGATCCAAAAGGCA
CACGGTGTGGTCGGATATTATTTCCTGTGGAATATTTCATGCACATATTC
CAGGTGGGGGATCAGCACGCACGGGTATTGAGGCGAGAGAGGCAGGAGGT
CCCTAGTATGGGACAAGGGAGAGGCGGATGTCTGCTGCTTGTAGGCCTGG
CTTGTGTGTGTGAGGCACCAGCAGCAGCAGCAGCCCAACTGTAACAGGTT
GGCTCATTTTGCTATCGGTACAGAGCCTAAGAATATGTCGTTCCAGTTTT
GAAATGAAATTCAAGCGCAACAAAGCATCCTGCCGGGTTGACTTGCTGCC
TGGCCTCACTCGCAGGCACATTGCCCGGTTGCGGGCGTGTATATTCATGC
CCTCCTAGAGTCAAAGGCGTAAAGGGGTGTTGACCGGGGCGAGCTGGACA
TGGCCGCGGCGGAAAAATGTTTTTGCGTAGGAAAGTCCGCCTAATGCGCA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1136:12726..20575-

>mRNA_E-siliculosus-1a_F_contig1136.898.1 ID=mRNA_E-siliculosus-1a_F_contig1136.898.1|Name=mRNA_E-siliculosus-1a_F_contig1136.898.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2322bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1136:12726..20575- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACCTTACGAGGGGGACCGCCTCGGGGAAGGGCGATGGCGGAGGGAT
GAGCAAGACACCTCAAGATGGACCTTACGAGGGGGACCGCCTCGGGGAAG
GGCGATGGCGGAGGGATGAGCAAGACACCTCAAGGTGGCCGCGCCGGCGG
CACCGCCACTCTCCCTCTGGCTGCCCTGGAGTGCGCCGTATGCCTGTCTC
TGGTGTGCGAGCCCGTGAGCCTCAGCTGCGGGCACTCGTTCTGCAGGGTC
TGCCTCGTCAACACCCTACGCCGGAACAAGAAGAAGTGCCCCACGTGTCG
AGCGGTGTGTCACAACAGGCGAGAATTTGTGTGGCCGCGCCGGCGGCACC
GCCACTCTCCCTCTGGCTGCCCTGGAGTGCGCCGTATGCCTGTCTCTGGT
GTGCGAGCCCGTGAGCCTCAGCTGCGGGCACTCGTTCTGCAGGGTCTGCC
TCGTCAACACCCTACGCCGGAACAAGAAGAAGTGCCCCACGTGTCGAGCG
GTGTGTCACAACAGGCGAGAATTTGTTGCGGAAGATCAGCCGGAAGACGT
GATGCTCGCCAGCATCGCCCGAACCTGCTTCCCCGAGCTCGCGGCGGCCC
GGCTGAAGGAGGTGGAGGCGGAGCGGGAGAAGTTCATGACCGTGCTGCCA
GTGTTTTATTTGCGGAAGATCAGCCGGAAGACGTGATGCTCGCCAGCATC
GCCCGAACCTGCTTCCCCGAGCTCGCGGCGGCCCGGCTGAAGGAGGTGGA
GGCGGAGCGGGAGAAGTTCATGACCGTGCTGCCAGTGTTTTATTACAACG
TGCCCATGTTTCCCGGAGAGAGCCTGCAGCTGCACCTGTTCGAGCCGCGC
TACAAGCTCATGATGAAGAGAGTCGTCAACACCTCGCGAAGACAACGTGC
CCATGTTTCCCGGAGAGAGCCTGCAGCTGCACCTGTTCGAGCCGCGCTAC
AAGCTCATGATGAAGAGAGTCGTCAACACCTCGCGAAGGTTCGCGTACGT
TCCCAACTACTCGAACTACGTCGCGACCATCGGGGACGTAGCGCTCGTCG
CCCAGCTGGTTCGCGTACGTTCCCAACTACTCGAACTACGTCGCGACCAT
CGGGGACGTAGCGCTCGTCGCCCAGCTGGTCGAGTGCGAGTTCCTGAGCG
ACGGGCGCGTGCTGCTCAAGGCGAAGCTGATCTCGAGACAGACGGTGATC
GACCATTTCGTTGAGGAGGGCACCCAGGGGCTGCACTTCTGCCGCGTCGA
GGCCCGCGGCGACGAACCCCCCTCGAACGAACAACACGGGGACGCCTCAG
CACGGGTGGAGGAACTCCACGCGAGGACACGGCGGCTCATCCTGGACGCG
ATTGGGCCGTTCATGGTCGAGTGCGAGTTCCTGAGCGACGGGCGCGTGCT
GCTCAAGGCGAAGCTGATCTCGAGACAGACGGTGATCGACCATTTCGTTG
AGGAGGGCACCCAGGGGCTGCACTTCTGCCGCGTCGAGGCCCGCGGCGAC
GAACCCCCCTCGAACGAACAACACGGGGACGCCTCAGCACGGGTGGAGGA
ACTCCACGCGAGGACACGGCGGCTCATCCTGGACGCGATTGGGCCGTTCA
TGTCGGAAATGATCGAGAGGTACGGCGAGATCCCAGCGAGCGCGGAAGGC
TTCTCCCAGTGGGCGGCCGCCGTCCTGCCCATGCCGGTGCGCGAGAAGCA
CGCCATGCTCTCGGGGAGGTCCACCGCCGACCGACTAGTCGCCTGCGAGC
GCCACCTGGCGCCCCTCACGACCGGGCGAGGGGGGGGGGTGCCTCCCGCG
CTCGCGGAGCCCCGTGACGTCACCGCGGTGGCCGACGCCTTCACCCGCCA
CATCTCCGACGCGGTCCACACGCCCGAGTCTGTGGCGGCGGCAGTGTCCG
CCGGCCCTGGGGATGGTAGTAGAGAAGAGGAAGGGGGCGACGCGGGATCG
GACGAAGGCTGATCGGAAATGATCGAGAGGTACGGCGAGATCCCAGCGAG
CGCGGAAGGCTTCTCCCAGTGGGCGGCCGCCGTCCTGCCCATGCCGGTGC
GCGAGAAGCACGCCATGCTCTCGGGGAGGTCCACCGCCGACCGACTAGTC
GCCTGCGAGCGCCACCTGGCGCCCCTCACGACCGGGCGAGGGGGGGGGGT
GCCTCCCGCGCTCGCGGAGCCCCGTGACGTCACCGCGGTGGCCGACGCCT
TCACCCGCCACATCTCCGACGCGGTCCACACGCCCGAGTCTGTGGCGGCG
GCAGTGTCCGCCGGCCCTGGGGATGGTAGTAGAGAAGAGGAAGGGGGCGA
CGCGGGATCGGACGAAGGCTGA
back to top