mRNA_E-siliculosus-1a_F_contig11351.894.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11351.894.1
Unique NamemRNA_E-siliculosus-1a_F_contig11351.894.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11351.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11351contigE-siliculosus-1a_F_contig11351:60..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size354
Model size705
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11351.894.1prot_E-siliculosus-1a_F_contig11351.894.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11351 61..414 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.1526866-UTR-E-siliculosus-1a_F_contig11351:59..601622927646.1526866-UTR-E-siliculosus-1a_F_contig11351:59..60Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11351 60..60 +
1696318622.9817908-UTR-E-siliculosus-1a_F_contig11351:59..601696318622.9817908-UTR-E-siliculosus-1a_F_contig11351:59..60Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11351 60..60 +
1622927646.1828449-UTR-E-siliculosus-1a_F_contig11351:414..7641622927646.1828449-UTR-E-siliculosus-1a_F_contig11351:414..764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11351 415..764 +
1696318623.0009825-UTR-E-siliculosus-1a_F_contig11351:414..7641696318623.0009825-UTR-E-siliculosus-1a_F_contig11351:414..764Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11351 415..764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.1686592-CDS-E-siliculosus-1a_F_contig11351:60..4141622927646.1686592-CDS-E-siliculosus-1a_F_contig11351:60..414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11351 61..414 +
1696318622.9915247-CDS-E-siliculosus-1a_F_contig11351:60..4141696318622.9915247-CDS-E-siliculosus-1a_F_contig11351:60..414Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11351 61..414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11351.894.1

>prot_E-siliculosus-1a_F_contig11351.894.1 ID=prot_E-siliculosus-1a_F_contig11351.894.1|Name=mRNA_E-siliculosus-1a_F_contig11351.894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=118bp
MGMMLSAFLSRQLERQESDGGDGVFDGSCIVGSRGTRFARCSGRWRHSNN
RRPAASCLSGEVRPVRPVGWLGWLGRKARAYRVFPRRRIFFCLVFFRMLF
FSLLAPPPPPAVDACRV*
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mRNA from alignment at E-siliculosus-1a_F_contig11351:60..764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11351.894.1 ID=mRNA_E-siliculosus-1a_F_contig11351.894.1|Name=mRNA_E-siliculosus-1a_F_contig11351.894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=705bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11351:60..764+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATGGGCATGATGCTGTCTGCGTTTCTTTCAAGACAACTGGAGAGGCAGG
AAAGTGACGGGGGCGATGGTGTTTTCGACGGCTCCTGCATAGTAGGCAGC
CGTGGAACCAGGTTTGCCAGGTGCTCTGGCAGGTGGAGGCACAGCAACAA
CCGTAGACCAGCAGCTTCTTGTCTAAGCGGAGAAGTCCGACCTGTTCGTC
CTGTAGGCTGGCTAGGCTGGCTTGGTCGGAAGGCTCGCGCATATCGAGTG
TTTCCTCGACGGAGGATTTTTTTTTGTCTTGTTTTTTTTCGGATGTTGTT
TTTCTCTCTGCTCGCCCCGCCCCCCCCCCCTGCCGTCGATGCGTGTCGTG
TGTGACGATTGCCTCCCTATGGACGAGTGGTGGATGATGGCCGGACGATG
ACGACGTGCGGGGAATGGAGGGGTAGAGAGACGTAGGCACTCGACGTCAT
GTGCTTGGGAAGAGGTTGGAGGTGCGGCAACAAGAATCAACAACGGACAG
GCAGAAAAAGACGCTCTGGGTCATTCGGACGGTAGCGCTAGTTTTCAAGT
ATGCTGGGCGGGCGGGAGGAGCGAACGAAGTTTCGCGATCTCGGCTTGTC
GCCGGTCTGTCTCCTGTAATCGTTTTGAGGTCTTGTCTCTTCTCCTGCAG
GGGTTTCAAAGCACGTGCGGCTTCGGTTGGCACTCCCCGACCGCACGGGG
ACGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11351:60..764+

>mRNA_E-siliculosus-1a_F_contig11351.894.1 ID=mRNA_E-siliculosus-1a_F_contig11351.894.1|Name=mRNA_E-siliculosus-1a_F_contig11351.894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11351:60..764+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCATGATGCTGTCTGCGTTTCTTTCAAGACAACTGGAGAGGCAGGA
AAGTGACGGGGGCGATGGTGTTTTCGACGGCTCCTGCATAGTAGGCAGCC
GTGGAACCAGGTTTGCCAGGTGCTCTGGCAGGTGGAGGCACAGCAACAAC
CGTAGACCAGCAGCTTCTTGTCTAAGCGGAGAAGTCCGACCTGTTCGTCC
TGTAGGCTGGCTAGGCTGGCTTGGTCGGAAGGCTCGCGCATATCGAGTGT
TTCCTCGACGGAGGATTTTTTTTTGTCTTGTTTTTTTTCGGATGTTGTTT
TTCTCTCTGCTCGCCCCGCCCCCCCCCCCTGCCGTCGATGCGTGTCGTGT
GTGAATGGGCATGATGCTGTCTGCGTTTCTTTCAAGACAACTGGAGAGGC
AGGAAAGTGACGGGGGCGATGGTGTTTTCGACGGCTCCTGCATAGTAGGC
AGCCGTGGAACCAGGTTTGCCAGGTGCTCTGGCAGGTGGAGGCACAGCAA
CAACCGTAGACCAGCAGCTTCTTGTCTAAGCGGAGAAGTCCGACCTGTTC
GTCCTGTAGGCTGGCTAGGCTGGCTTGGTCGGAAGGCTCGCGCATATCGA
GTGTTTCCTCGACGGAGGATTTTTTTTTGTCTTGTTTTTTTTCGGATGTT
GTTTTTCTCTCTGCTCGCCCCGCCCCCCCCCCCTGCCGTCGATGCGTGTC
GTGTGTGA
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