mRNA_E-siliculosus-1a_F_contig1134.890.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A6H5JKJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ9_9PHAE) HSP 1 Score: 225 bits (573), Expect = 3.230e-71 Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 3
Query: 60 MSAAAVARCLRAVPAARAARSMVALSRNNVGGVYQQVPVARACPQPDVLASMVRRLDGCRVDGIMLNAAAQGDFLPVVPAMEAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNIIRNGP 419
MSAAAVARCLRAVPA RAARSMVALSRNNVGGVYQQVPVA ACPQPD+LAS+VR+LDGCRVDGIMLNAAAQGDFLPVVPAMEAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNIIRNGP
Sbjct: 1 MSAAAVARCLRAVPAVRAARSMVALSRNNVGGVYQQVPVAPACPQPDLLASLVRQLDGCRVDGIMLNAAAQGDFLPVVPAMEAVNRNARRPKKANHGKRPCSHVGRRRRRRRKNIIRNGP 120
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A7S0W7F3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7F3_9CRYP) HSP 1 Score: 54.3 bits (129), Expect = 6.640e-6 Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 3
Query: 300 MEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
+EA+NRNARRPKKANHGKRP SHVGRR+RR
Sbjct: 70 VEAMNRNARRPKKANHGKRPNSHVGRRKRR 99
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A067CWA3_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CWA3_SAPPC) HSP 1 Score: 53.5 bits (127), Expect = 1.160e-5 Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 3
Query: 291 VPAMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
+P M+ V RN+R+PKKANHGKRPCSHV RR RR
Sbjct: 64 IPGMQLVGRNSRKPKKANHGKRPCSHVRRRSRR 96
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A3R7Z114_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7Z114_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.350e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 42 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 72
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A225WHG2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WHG2_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.520e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 47 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 77
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A0P1AMW0_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMW0_PLAHL) HSP 1 Score: 52.8 bits (125), Expect = 1.600e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 50 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 80
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A2P4XSB6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSB6_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.600e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 49 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 79
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: A0A3F2RXH5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXH5_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 1.720e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 52 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 82
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: W2R1K3_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2R1K3_PHYPN) HSP 1 Score: 52.8 bits (125), Expect = 1.760e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 53 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 83
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Match: G4YXE9_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YXE9_PHYSP) HSP 1 Score: 52.8 bits (125), Expect = 1.800e-5 Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 3
Query: 297 AMEAVNRNARRPKKANHGKRPCSHVGRRRRR 389
AME +NRNARRPKKANHGKRPCSH RR++R
Sbjct: 54 AMELLNRNARRPKKANHGKRPCSHHRRRQKR 84 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1134.890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1134.890.1 >prot_E-siliculosus-1a_F_contig1134.890.1 ID=prot_E-siliculosus-1a_F_contig1134.890.1|Name=mRNA_E-siliculosus-1a_F_contig1134.890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp MSAAAVARCLRAVPAARAARSMVALSRNNVGGVYQQVPVARACPQPDVLAback to top mRNA from alignment at E-siliculosus-1a_F_contig1134:31424..35303+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1134.890.1 ID=mRNA_E-siliculosus-1a_F_contig1134.890.1|Name=mRNA_E-siliculosus-1a_F_contig1134.890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3880bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:31424..35303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1134:31424..35303+ >mRNA_E-siliculosus-1a_F_contig1134.890.1 ID=mRNA_E-siliculosus-1a_F_contig1134.890.1|Name=mRNA_E-siliculosus-1a_F_contig1134.890.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:31424..35303+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |