mRNA_E-siliculosus-1a_F_contig1134.889.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1134.889.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1134.889.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: D7FQY7_ECTSI (Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY7_ECTSI)

HSP 1 Score: 617 bits (1590), Expect = 8.580e-221
Identity = 312/317 (98.42%), Postives = 313/317 (98.74%), Query Frame = 2

Query:  125 MPATLAFLCLVAHSSTSAAASTCHGGAPSRAFLAHGRRSSALTSSHARSCNPGPTTQEESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVASTEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 1075
            MPATLAFLCLVAHSSTSAAASTC GGAPSRAFLAHGRRSSALTSS+ARSCNPGPTTQ ESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPV  TEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC
Sbjct:    1 MPATLAFLCLVAHSSTSAAASTCQGGAPSRAFLAHGRRSSALTSSNARSCNPGPTTQGESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVPITEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQWIYHDDLC 317

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A835ZFF1_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF1_9STRA)

HSP 1 Score: 263 bits (671), Expect = 8.600e-81
Identity = 139/255 (54.51%), Postives = 175/255 (68.63%), Query Frame = 2

Query:  326 ETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGD---GELDLEGG--GLMRRLKRLVSGVFRKVRGSPVASTEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDL 1072
            E   L++RGG     S   LFM++ +PG+  D  GD   G+  L     GL +R+KR +S +F   +  P    +  G+ K         G +K  T   HL   +RPG+ANYRIQKEL+EFM NPP+ C+VSVGK+++VWIITI+GA+GTI+ GEKF+LRV FPE YP KPP+VYFLQ PPPP+H+H+YTNGDICLSLL  +DW PNLT  +LALSILSMLSSAKEKR P DN  +A  RPGQ+Q  WIYHD+ 
Sbjct:  123 EQRGLMLRGGGKGSLSKFQLFMQIFIPGYGEDAAGDDGDGKAALTSAQPGLAKRVKRFLSALFSGGKKQPTKGAKG-GKGKG--------GSSKDDTVGKHLASKHRPGDANYRIQKELQEFMKNPPEGCQVSVGKSLKVWIITITGAKGTIFEGEKFKLRVGFPENYPLKPPSVYFLQDPPPPEHEHVYTNGDICLSLLG-KDWTPNLTASALALSILSMLSSAKEKRRPADNFQNANRRPGQSQDSWIYHDNF 367

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A0G4GVI6_9ALVE (UBC core domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GVI6_9ALVE)

HSP 1 Score: 221 bits (562), Expect = 9.610e-67
Identity = 107/170 (62.94%), Postives = 132/170 (77.65%), Query Frame = 2

Query:  569 KKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPG-QAQQWIYHDDLC 1075
            KKS GK K   T++HL+  + PGN NYRIQKELKEF+ +PP  C+VSVG N+R WIITI G EGT+Y  E ++L+V FP+EYP  PP+VYFL+  P P+H H+YTNGDICL+LL + DWKP LTV ++AL+ILSMLSSAKEK++P DNA HAEA PG Q   W+YHDD C
Sbjct:   36 KKSGGKKKADATSNHLKAKWTPGNPNYRIQKELKEFIKSPPPNCRVSVGSNLRAWIITIKGVEGTLYEKETYKLKVVFPDEYPLVPPSVYFLR--PAPRHPHVYTNGDICLNLLGT-DWKPTLTVSAIALAILSMLSSAKEKKIPLDNAAHAEAPPGGQQHNWMYHDDKC 202

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A0G4GQN8_VITBC (UBC core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GQN8_VITBC)

HSP 1 Score: 221 bits (562), Expect = 1.090e-66
Identity = 101/156 (64.74%), Postives = 128/156 (82.05%), Query Frame = 2

Query:  611 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPG-QAQQWIYHDDLC 1075
            HL +++RPG+ NYRIQKELK+F+  PPD C+++VG NIRVWIIT++G EGT+Y GEK+RL++ FP EYP KPP +YFLQ  P P+H H+Y+NGDICL+LL + DWKP LTV S+ALSILSMLSSAKEK+LP DNA+HA+ + G Q   W+YHDD C
Sbjct:   54 HLRRSFRPGHVNYRIQKELKDFLTTPPDHCEIAVGSNIRVWIITLTGVEGTLYEGEKYRLKIVFPPEYPLKPPIIYFLQ--PTPRHPHVYSNGDICLNLLGT-DWKPTLTVASVALSILSMLSSAKEKKLPLDNASHADLKAGGQQHNWMYHDDKC 206

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: W7U274_9STRA (Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U274_9STRA)

HSP 1 Score: 223 bits (567), Expect = 5.760e-66
Identity = 117/252 (46.43%), Postives = 164/252 (65.08%), Query Frame = 2

Query:  323 LETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVASTEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQ-QWIYHDDLC 1075
            L T     RGG+ +  SL    MR      +R           GG +  R+KR + G+     GS       +   ++ +      G+  G     HL K +R GNAN+R+QKEL+E++ANP +  +V+VG NIRVW++T++GA+GTI+AGEK++L+ +FP +YP+KPP+VYFLQ  PPP+H+H+YTNGDICL+LL  RDW+PN+T   LALSILSMLSSA+EK++P+DN  HA+  PG+ Q  W+YHDD C
Sbjct:   78 LITLLAQKRGGALQSSSLLGRIMRAWRGSAKR-----------GGSIHGRIKRFL-GLLWNAAGSSAGHDVKRSTIRSGSLGGVGGGRLGGNRMQKHLGKEFRRGNANFRVQKELREWLANPTENLQVAVGDNIRVWVVTLTGAKGTIFAGEKYKLKFTFPMDYPSKPPSVYFLQ--PPPRHEHVYTNGDICLNLLG-RDWRPNMTASMLALSILSMLSSAREKKIPQDNHVHADNPPGKEQANWLYHDDRC 314

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A7S1TYR4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYR4_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.210e-63
Identity = 104/153 (67.97%), Postives = 125/153 (81.70%), Query Frame = 2

Query:  614 LEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDD 1069
            L K  + GN  YRIQKEL+EF+ NPP  CKVSVG NIRVW +T++GAE T+Y GE+++LRV+FP  YPTKPP+VYFL+  PPPKH H+YTNGDICLSLL  +DW+PNLT  SLALSILSMLSSA+EKRLP DNA HA++ PG+ Q  W+YHDD
Sbjct:   91 LGKRVKRGNPLYRIQKELREFVDNPPPNCKVSVGDNIRVWTVTLTGAEDTLYEGEEYKLRVTFPTGYPTKPPSVYFLK--PPPKHPHVYTNGDICLSLLG-KDWRPNLTASSLALSILSMLSSAREKRLPNDNAQHADSPPGKPQDGWMYHDD 240

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A7S2R2N4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2N4_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.200e-60
Identity = 103/176 (58.52%), Postives = 128/176 (72.73%), Query Frame = 2

Query:  551 KNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 1075
            K V  KKK  GK+  A    H+ K  +  N NYRIQ+ELKEF+ +PP   KV+VGKNIRVWIIT+ GA+ TIY G+KFRLRV FP +YPT PP+VYFLQ  P P+H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LS A+ K LP DNA +   +PG  Q  W+YHDD C
Sbjct:   40 KPVVAKKKPAGKSAAAV---HIAKELKSNNPNYRIQRELKEFLKSPPPNLKVNVGKNIRVWIITLIGAKNTIYDGDKFRLRVQFPADYPTSPPSVYFLQ--PTPRHEHVYTNGDICLSLLG-KDWRPTMTAQSIAMSILSILSGAQRKSLPMDNARNCLNKPGAKQDDWVYHDDNC 209

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A7S4A863_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A863_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.590e-59
Identity = 118/253 (46.64%), Postives = 159/253 (62.85%), Query Frame = 2

Query:  320 ALETFALVVRGGSDEDPSLTTLFMRVLMPGFRRDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVASTEPKGEAKNVATKKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 1075
            A+ T AL V GG++   SL       L+ G     GG G L     G++R+  R+   +    +      T P  + K VA KKK +  A+ +      +          RI +EL +F+ NPPD CKVSVGKN+ VWI+T++GAEGTI+AGEK++LRVSFP +YPT PP+ YFL+  P P+H H+YTNGDICL+LL +  W+P +TV  L+LSILSMLSSAK K +P+DNA HA + PG+ Q+ W+YHDD C
Sbjct:   86 AMHTRALRVSGGANAT-SLAPEAKAGLLDG-----GGGGSLATRLFGVIRKTVRMTLRLLGFGKDGGDEDTAPATK-KKVAAKKKRRSPARASPAQRQAQ----------RISRELTDFVENPPDGCKVSVGKNLNVWIVTMTGAEGTIFAGEKYKLRVSFPADYPTSPPSCYFLE--PTPRHPHVYTNGDICLNLLGN-GWRPTITVAQLSLSILSMLSSAKTKGIPQDNAVHAASAPGKPQEGWMYHDDSC 318

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A6U3E3N1_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3E3N1_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.680e-58
Identity = 95/165 (57.58%), Postives = 126/165 (76.36%), Query Frame = 2

Query:  584 KAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 1075
            K+K      H++K  +  + NYRIQ+ELK F+++PP   KV VGKNIRVWI+T+SGA+ TIY GE F+LR++FP  YPT PP+VYFL  P  P H+H+YTNGDICLSLL  +DW+P +T  S+A+SILS+LSSA+ K LP DNA H++ +PG+ Q+ W+YHDDLC
Sbjct:   42 KSKSTLANLHVKKELKATSPNYRIQRELKSFLSDPPPNLKVKVGKNIRVWIVTMSGAKDTIYEGETFQLRIAFPAAYPTVPPSVYFLP-PNIPLHEHVYTNGDICLSLLG-KDWRPTMTAQSIAVSILSILSSAQSKSLPMDNARHSQNKPGEYQKDWVYHDDLC 204

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BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Match: A0A7S4RNY0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNY0_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.030e-58
Identity = 98/156 (62.82%), Postives = 120/156 (76.92%), Query Frame = 2

Query:  611 HLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVGKNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPKHQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNATHAEARPGQAQQ-WIYHDDLC 1075
            HL    +  + NYRIQKEL+ F+ +PP    V+VGKNIRVWI+TI+GA  TIY GEK+RLR+SFP  YPT PP+VYFL  PP PKH+H+YTNGDICLSLL  +DW+P +T  SLA+SILS+LSSA+EK LP DNA H++ +PG  Q  WIYHDD C
Sbjct:  196 HLSAKLKSNSPNYRIQKELRAFLTSPPPNLSVAVGKNIRVWIVTITGASNTIYEGEKYRLRMSFPSNYPTSPPSVYFL--PPTPKHEHVYTNGDICLSLLG-KDWRPTMTGQSLAVSILSLLSSAREKSLPMDNAAHSQNKPGGNQDNWIYHDDNC 348

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1134.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQY7_ECTSI	8.580e-221	98.42	Ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si...	[more]
A0A835ZFF1_9STRA	8.600e-81	54.51	Ubiquitin-conjugating enzyme/RWD-like protein n=1 ...	[more]
A0A0G4GVI6_9ALVE	9.610e-67	62.94	UBC core domain-containing protein n=1 Tax=Chromer...	[more]
A0A0G4GQN8_VITBC	1.090e-66	64.74	UBC core domain-containing protein n=1 Tax=Vitrell...	[more]
W7U274_9STRA	5.760e-66	46.43	Ubiquitin-conjugating enzyme n=2 Tax=Monodopsidace...	[more]
A0A7S1TYR4_9STRA	1.210e-63	67.97	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2R2N4_9STRA	3.200e-60	58.52	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S4A863_9STRA	1.590e-59	46.64	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
A0A6U3E3N1_9STRA	1.680e-58	57.58	Hypothetical protein n=1 Tax=Amphiprora paludosa T...	[more]
A0A7S4RNY0_9STRA	2.030e-58	62.82	Hypothetical protein n=1 Tax=Ditylum brightwellii ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1134	contig	E-siliculosus-1a_F_contig1134:25193..31313 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	963
Model size	1313
Exons	9
Ec32 ortholog	Ec-09_003260.1
Ec32 ortholog description	Ubiquitin-conjugating enzyme
Hectar predicted targeting category	chloroplast
BRITE	ko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	O
EC	2.1.1.297,2.3.2.25
EggNOG OGs	COG5078@1,KOG0427@2759
EggNOG free text desc.	protein modification by small protein conjugation
GOs	GO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
KEGG Pathway	ko04120,ko04138,ko05146,map04120,map04138,map05146
KEGG Reaction	R04112
KEGG ko	ko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG rclass	RC00064,RC00141
Preferred name	UBC18
Seed eggNOG ortholog	2880.D7FQY7
Seed ortholog evalue	3.6e-174
Seed ortholog score	617.5
Taxonomic scope	Eukaryota

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927645.3484309-UTR-E-siliculosus-1a_F_contig1134:25192..25427	1622927645.3484309-UTR-E-siliculosus-1a_F_contig1134:25192..25427	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1134 25193..25427 -
1696318622.6811922-UTR-E-siliculosus-1a_F_contig1134:25192..25427	1696318622.6811922-UTR-E-siliculosus-1a_F_contig1134:25192..25427	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1134 25193..25427 -
1622927645.528462-UTR-E-siliculosus-1a_F_contig1134:29797..29811	1622927645.528462-UTR-E-siliculosus-1a_F_contig1134:29797..29811	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1134 29798..29811 -
1696318622.7652047-UTR-E-siliculosus-1a_F_contig1134:29797..29811	1696318622.7652047-UTR-E-siliculosus-1a_F_contig1134:29797..29811	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1134 29798..29811 -
1622927645.5436628-UTR-E-siliculosus-1a_F_contig1134:31212..31313	1622927645.5436628-UTR-E-siliculosus-1a_F_contig1134:31212..31313	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1134 31213..31313 -
1696318622.7735107-UTR-E-siliculosus-1a_F_contig1134:31212..31313	1696318622.7735107-UTR-E-siliculosus-1a_F_contig1134:31212..31313	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1134 31213..31313 -

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1134.889.1	prot_E-siliculosus-1a_F_contig1134.889.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1134 25428..29797 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1134:25193..31313-
coding sequence from alignment at E-siliculosus-1a_F_contig1134:25193..31313-

protein sequence of mRNA_E-siliculosus-1a_F_contig1134.889.1

>prot_E-siliculosus-1a_F_contig1134.889.1 ID=prot_E-siliculosus-1a_F_contig1134.889.1|Name=mRNA_E-siliculosus-1a_F_contig1134.889.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=321bp
MVGMPATLAFLCLVAHSSTSAAASTCHGGAPSRAFLAHGRRSSALTSSHA
RSCNPGPTTQEESGHGEDALETFALVVRGGSDEDPSLTTLFMRVLMPGFR
RDKGGDGELDLEGGGLMRRLKRLVSGVFRKVRGSPVASTEPKGEAKNVAT
KKKSKGKAKGATTTSHLEKTYRPGNANYRIQKELKEFMANPPDCCKVSVG
KNIRVWIITISGAEGTIYAGEKFRLRVSFPEEYPTKPPAVYFLQSPPPPK
HQHIYTNGDICLSLLSSRDWKPNLTVMSLALSILSMLSSAKEKRLPEDNA
THAEARPGQAQQWIYHDDLC*

mRNA from alignment at E-siliculosus-1a_F_contig1134:25193..31313-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1134.889.1 ID=mRNA_E-siliculosus-1a_F_contig1134.889.1|Name=mRNA_E-siliculosus-1a_F_contig1134.889.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6121bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:25193..31313- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGCAGTGCACATTGCAGGCAGTGAGTCGTCTTCGCTGTGCCTGCTTGTC
CTTCGGAGACACATACATACAAACCCACACACAGCTTGGGCAGCTTCACA
GGTGTGTGCTTGGCAGTTATTTGAATCGCTTGAAAGCAACAAGGTAGGCC
TTGTAGTGCATACGGTTGGGCGAGTAATGAGTGCCGCTGAAAGTGGACTG
CTGTGTACCCGCGTGCAGTAACCTTGTGTCGAATATATGTGCCACAGCAG
CAGTTATGAAGCTGGCGGTATAGCATCCGACAAACCAGTGAGACGTATGG
AGTTTCCATTGGTGTTTGCGTGATAAGGCAAGCCATGTAACACTCTGGTT
CCGCTGTTTCCACGTTTAGGCTTTTCAGTGCAAGGTCACATGGCTGTTGG
CGACAACTGGCCTCTCATGATTCCACATGTCATGTTGTGGGAGGCCGCCG
CATTCAAATTCAACGACTTCGCACTTCGCACCCTAGCGGGTGACCTCCCT
TTAATCCGGGCAATACATTGCATGTTTGACGCCCTATTGCTGCCGTGAGT
ATCGTAGCGTTGCCAAACGCCCCCCTCGACACAATCTGCGCCGTACACAG
CAGTAGTGCTGTACTTTCGCTGCTGTCTTGACCATACCAGCGTCGCATGT
ATCATATCATCATATCCAGTAGGTTGCCGGCACGCGAGATTCGCTGCATG
CGGAAGTGCGCGAGATCACGACCAAAATATGCGCATCCGCCCGATTTTAG
AATCATGTTCGCATGCACGGAAATAGTGCACAGCTTTTGTAGTTGGAACT
ACAGCTCTAAGAAGATAGAGAGGCAAACGACCAAAATATGCGCATCCGCC
CGATTTTAGAATCATGTTCGCATGCACGGAAATAGTGCACAGCTTTTGTA
GTTGGAACTACAGCTCTAAGAAGATAGAGAGGCAAAGTGCCACTGCTGTA
TGCTACAAGCGTGTCCTTCTCACTTCTAGACTGTAAGCTCACTTCTAGAC
TGTAAGTCGTAATGAGTGGTATATCAAGATTGGTTCCCAGTGGTCCATGT
ATCATAGTAAAAGGAAGAGAGAGGGGAAGAACAAATGATAGCGGCAGGCA
GAGATCACGGCCACAGGCTTTTTATTTTTGGCAGCACGACCGAAGCACCC
CCACCAGATCACGCCTGTAGGGACGTCTCTGGTGAAGGCGCTCGACGTTT
GCACTCTCGCTGCTGCTGGCGGTGCTAGGCACCGAACACGTGGTTCTCGC
TGGGAAACTCGAGGTCGCTGCCTGTGGGTGCAAGTAGGGCGAGTGCATTC
GCTCAGCAGCAACAGGGTTGTCTCAAGAGTACTAAAAAACACAGCAGTGA
AACAACAACGATGTTGGCGTACAACCGATGTACAAAAGGCAGGTGTAGAA
ATGTTGGCCTTGCTTCACAAAGTACTGCAACACGTGTTGCTTGACAAAAC
CGCCACTGCTGTGCTTTTTCTCCTCGCACCTCTCCTGCCGATCAACTGGC
AGATACAACGACCAACATGGTGGGCATGCCTGCAACGTTGGCGTTCCTGT
GTCTGGTCGCACATTCCTCAACTTCGGCCGCCGCGTCTACCTGTCACGGA
GGAGCTCCTTCAAGAGCTTTCCTCGCCCACGGCAGGCGGTCTTCGGCCCT
GACTAGCTCTCACGCTCGGTCATGTAACCCTGGCCCAACAACACAGGTAG
GTTTTCATTTTCTCTTGGTGAGGGCAAACTTGTTCCTATGCTGATTGTCT
TTTGTCCAAGGCTGTTCTGTTGCGTTGCGTGTTGCCATGGGGCTATGATG
TCAGGTGCCTGAATGGCGGGAGATGATTTACTCGCGGTCGTATTTCAGGG
CTCCTGTCTTTCACAGGTTCGCCCGTTTTTCAAGGGCTACAGTACGACGT
TGGAAATATATCTCCGTCCTACACACACTGCTTGATAAATTGTCCAGAAT
AATGCCGCTGCAGCTCCCTAGAAATTGTTGTTGAAGAATCTCCCATGCAA
CTCCCAGTTCCAGTTCCATTGCGTCACTCCACTCCCAAGCACACTTTTTC
TGATCTTGCTGGCATTTTTTGCGCGCCGATCCCAGCAGGGAAACTCCCAT
ATCTCGTTTGTTTCGTCAACTTTGCTTCACTTTGGCCTCGACGAATCAGA
CTCTTGATATTTTGGGGAAAGTGGCTCATGTACGATACAAGCTGACGATG
GATCGACTTTTCGTCTCGAGGGGCATGGACGCGTAGTTTGCTCAACGGTT
GGACACATCATGACTACCACCCCTTCCTTTTGTCCTCCTTCACATCAGGA
AGAGTCTGGTCATGGCGAGGACGCATTAGAAACGTTTGCCTTGGTTGTGA
GAGGAGGAAGCGACGAGGATCCATCCCTCACTACGCTCTTTATGCGAGTT
CTAATGCCAGGCTTTAGACGAGACAAGGGCGGGGACGGGGAGTTGGACTT
GGAAGGAGGTGGGCTGATGCGAAGGCTGAAGCGGTTGGTGTCCGGGGTGT
TTCGGAAAGTGCGAGGGTCGCCGGTCGCGAGCACTGAACCCAAAGGTGAG
GAGAGTACTGCGATGACACTTTGAACGGACATTTTGACGCTCGGGACAAC
TAGGTGCGGGCAGCCTCCCGGGGGCGTTGGCATCGCATCTGTGTACAATA
ACTGCGCTTGTATTCCCTTTGGATGCATGAATCAAAGGTGTCTACGACCT
GGTGGAGAAAAATACGCACGGGGTGACTAGTTTGCTGGAGTAGCCTGTCT
TCTGGCTTGATCTATCCGCGTAGCTGACGCATTAGAGCAAGCGACTTGCG
TTGGCAGTCGGCGCAGGTGGGTATTGTTCGCAGCGTAGGTACGCGAGAGG
GTTTTAGAATTTTGGTCGACCGTTCGCCCAACTGATTGCAGGTGGTGCTG
CCCAACCCTCGGCTGCTATCTACAAACTCGGCTTGATGATTCCTGAGCCC
TCAATTTGATCTCTATCACGTCTCTGCACAGCTAGCTCGCCTGACCTGCC
TAGCGCGCGGATGCGCGTCGGAATTCTGGTGTAAGGAAATTGTGAAATGC
CGCTCTACGTCAGCTAACACCCCATCGAGGCGAGATGTTTTCACCGAGGT
GCTCATGTAGTCCGATTGTGTTGTAATTCACCTGTAAGGTGAGGCGAAAA
ACGTAGCGACCAAGAAAAAGAGCAAGGGAAAAGCTAAGGGGGCAACAACT
ACATCCCATCTCGAGAAAACGTACCGTCCAGGGAACGCCAACTATCGGAT
ACAGAAGGTATGCGCTCGTACGCACCCACTCAAGCATTGCGTCTCGCTGC
GTCGTGTGGCGATGTTGATGTGGCACTTGCAAAGATGATCGGGAATCGCC
CCGAGTTCTGAGCATGAGCTTGACAGTGTCGTTCTTGCTGTGTTTTGTTC
CCGCGCGGTACGCGCTCCCTGCTTGGCTATGCAGCTGTCGAAGTAGCAAG
TTTTATCGTGTGGGACGTCTGAAAGGCCGGTAACCGCCTGGATGAAAAAG
GAGTGTATTCGTTCAACAGGGTTGGTTCATGCGATACGTATTACTCTGAG
GAATCTATCCAAAGCAAGAAGCGAAGCACGGCAAAAGTGGTTTGCCGATT
GTTGCTTTTTGGCCGACGATGACGTAGACTCTCCAAGGCGTTCGGTACTA
CAGCACCGAGCCGAATGTCTGCATTCAACCCCCTACGATAGGACTGATTG
CTTATACTTAAGCATGTGAAGCAGCACGGAAATAAACCTGGCGCTGTTTC
CCCCCATGTCTCACACCGCTTTATTTAGGAATTGAAAGAATTCATGGCCA
ACCCGCCTGATTGCTGCAAGGTCAGCGTCGGTAAGAACATCAGGTAAGAG
GGCAGGGGAGAGAGGCAGCATGCTCATGGCGCGTTCATGTCGTAGATTTT
CGGCCCTTCAGAATCAAATTTGGCAACCCTGACGATTGGTTGCTTGCGTT
AAATGGCAAGCACCCACCAACATCCGGCTCGATTTGTCGTTATATCCGGC
CCTGGTTTCCGACCGCGAATTCTCTCTTCCCGGTATCTGGTCCGCCCCGT
GCATCACGTATTGATCGAATTGCTCGCGACGAGACGGATGAGCCCTCCGC
GAAGAAGCTTGCACTGCGAGAAAAGGACAATCATGTGATATGTCATGGTT
CCCAAGCCTGGCTCTCATGTGACCGTCTTGTAGACTCGTATGTAGCATGC
TCCACGCGTATGTATCCCGTTGACCGCGTTTCGGAATAGCCAGCAAGGCA
TCACTCAAATTATGTCGTGAACTCAAGAGGTAGAGTTCCTGTCTGAATTG
AGTACGCGCAACGTCATTCGCTGTTTTCTTCGCGGAAACTCCACCACAAA
CGTGTTTTACACCACCTGCTGCCGTTACCTCTCTTCTTGGCTGGCTCTTG
TAGAGTATGGATCATCACCATCAGCGGGGCGGAAGGCACCATTTACGCAG
GGGAGAAGTTCCGGCTTAGAGTATCCTTCCCCGAGGAGTACCCTACCAAA
CCGCCGGCGGTGTACTTCCTTCAATCTCCGCCGCCGCCGAAGCACCAGGT
TTGCCAGTCTTGCCTCAACCCCATGTCATTGTACATGCTGTCTGCGGTTG
ATCAACCAGCCAAGTGTCGTCTCGGTTTCGTTTAATCGACTTATGTTCTA
CTTGCGGCAATATGTATCAGCACCCAGCCGCGTGAATGGTATCACGTTTC
TTTCGGTAGCTCCCAAAGTGACTGTGGACAACCTGAGCGCTTCAGAAACA
AGCCACAAGTCGGCTTCTTAAGAGTCAGCTCTATTCCTTTTCCTGACTTC
CCCAATACATGTACATGGCATTGCCAATTTAAAGAACCGGCGTTTGCTAT
TGTTGCTCCTACGCCGTCAAGTGAAAAGATCGTGTGACATGCGTTGCTCC
TCTGAAGAACACGACTATCCTGCTGTGCCATAGGTTTCACGTCGGCAATC
CCCGCCTATTTCGTGACTTTTGTTGTCCTCTCTGTTCAGTCGCATCCTAT
CGCCTTCCGTTGCCCGTTTCCCATCGTAGCACATCTACACCAACGGAGAC
ATCTGCCTGAGCTTGTTGAGCTCCAGAGACTGGAAACCAAATCTCACCGT
CATGTAAGTCATAGGGCAGACCAACGGGTACGCGCGCGGCATGTGCGCTG
TGCCCATGTGCTCAAATACGCGGGCAATTGATGCTCGACGCCCAATCGCT
GGATATTCGCACATGTAAAAGATGGTAAACTGACGTGTAGGAACGTCGCC
TCCCACGCTAGCCTCTTCGAATTTTCACAATAGGCAGCAGCACAAGATGA
GCCATGTTGCACGCTTGAATCGGAAGGCAAGATCTGACATGCGAATCTCG
TTTGTGTTTTCGTTTTCGTTGTGGCTTGCGCGTCAATAATTTGTCAAGGT
CTCTGGCGCTGAGCATCCTCAGCATGCTCTCTAGCGCCAAGGAGAAGCGC
CTCCCAGAAGACAACGCTACACGTGAGTCTGCATCGCGGGCAGTGCGCAA
CAAGTCTTGATAGTTTCATGGCCATTGAACGAAGAATGGCGCAGCCTTTT
AGTCAAAGTGTACACTTTGCGTCCTATGTACAACTAAATAGCCTCCCGGA
CAACGCCCTTCCACCACAATTTTTGCGGGTGCAGTTTTATGGAGGCGCTT
GTCGTGACTGCCGACCCAAAACTCCTCCTGTGGTACGCCCAGTAGTTGCC
GATGCTGTCCGTAACCTCCCCTGTCTTTTGGCCGAGATAAAATTATCCCG
CGGCAGAGAACTCAATGAGCTGTGTTGCTCCTCTATTTCTCTGGCACTAC
TTGCTGTGTCGCGCCTTTTTGATGCAGATGCGGAAGCGAGACCAGGGCAG
GCTCAACAGTGGATATACCACGATGATCTGTGTTAGGTGTGGACCACAAC
ATGGCCGGCAGTTGCGGCTCATCCCTTTGAGCTTTAGCCAAGATCGTCAT
TTCCTGCTCTCGTCTCCTTGTGTAGTCTTGACGTGCTGCTTCTTGATGGT
AGAAATGGCGGTGCGGTGCAGGGGTAATGACGCTTTCGTTGCTGGCTGCT
GTGTGCCCCTAGAATCACTCATCCTAGATTTATATGTGGCACTCGAAGAC
ACTGCCCGACCTGATAATATG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1134:25193..31313-

>mRNA_E-siliculosus-1a_F_contig1134.889.1 ID=mRNA_E-siliculosus-1a_F_contig1134.889.1|Name=mRNA_E-siliculosus-1a_F_contig1134.889.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1926bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:25193..31313- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGGCATGCCTGCAACGTTGGCGTTCCTGTGTCTGGTCGCACATTC
CTCAACTTCGGCCGCCGCGTCTACCTGTCACGGAGGAGCTCCTTCAAGAG
CTTTCCTCGCCCACGGCAGGCGGTCTTCGGCCCTGACTAGCTCTCACGCT
CGGTCATGTAACCCTGGCCCAACAACACAGATGGTGGGCATGCCTGCAAC
GTTGGCGTTCCTGTGTCTGGTCGCACATTCCTCAACTTCGGCCGCCGCGT
CTACCTGTCACGGAGGAGCTCCTTCAAGAGCTTTCCTCGCCCACGGCAGG
CGGTCTTCGGCCCTGACTAGCTCTCACGCTCGGTCATGTAACCCTGGCCC
AACAACACAGGAAGAGTCTGGTCATGGCGAGGACGCATTAGAAACGTTTG
CCTTGGTTGTGAGAGGAGGAAGCGACGAGGATCCATCCCTCACTACGCTC
TTTATGCGAGTTCTAATGCCAGGCTTTAGACGAGACAAGGGCGGGGACGG
GGAGTTGGACTTGGAAGGAGGTGGGCTGATGCGAAGGCTGAAGCGGTTGG
TGTCCGGGGTGTTTCGGAAAGTGCGAGGGTCGCCGGTCGCGAGCACTGAA
CCCAAAGGAAGAGTCTGGTCATGGCGAGGACGCATTAGAAACGTTTGCCT
TGGTTGTGAGAGGAGGAAGCGACGAGGATCCATCCCTCACTACGCTCTTT
ATGCGAGTTCTAATGCCAGGCTTTAGACGAGACAAGGGCGGGGACGGGGA
GTTGGACTTGGAAGGAGGTGGGCTGATGCGAAGGCTGAAGCGGTTGGTGT
CCGGGGTGTTTCGGAAAGTGCGAGGGTCGCCGGTCGCGAGCACTGAACCC
AAAGGTGAGGCGAAAAACGTAGCGACCAAGAAAAAGAGCAAGGGAAAAGC
TAAGGGGGCAACAACTACATCCCATCTCGAGAAAACGTACCGTCCAGGGA
ACGCCAACTATCGGATACAGAAGGTGAGGCGAAAAACGTAGCGACCAAGA
AAAAGAGCAAGGGAAAAGCTAAGGGGGCAACAACTACATCCCATCTCGAG
AAAACGTACCGTCCAGGGAACGCCAACTATCGGATACAGAAGGAATTGAA
AGAATTCATGGCCAACCCGCCTGATTGCTGCAAGGTCAGCGTCGGTAAGA
ACATCAGGAATTGAAAGAATTCATGGCCAACCCGCCTGATTGCTGCAAGG
TCAGCGTCGGTAAGAACATCAGAGTATGGATCATCACCATCAGCGGGGCG
GAAGGCACCATTTACGCAGGGGAGAAGTTCCGGCTTAGAGTATCCTTCCC
CGAGGAGTACCCTACCAAACCGCCGGCGGTGTACTTCCTTCAATCTCCGC
CGCCGCCGAAGCACCAGAGTATGGATCATCACCATCAGCGGGGCGGAAGG
CACCATTTACGCAGGGGAGAAGTTCCGGCTTAGAGTATCCTTCCCCGAGG
AGTACCCTACCAAACCGCCGGCGGTGTACTTCCTTCAATCTCCGCCGCCG
CCGAAGCACCAGCACATCTACACCAACGGAGACATCTGCCTGAGCTTGTT
GAGCTCCAGAGACTGGAAACCAAATCTCACCGTCATCACATCTACACCAA
CGGAGACATCTGCCTGAGCTTGTTGAGCTCCAGAGACTGGAAACCAAATC
TCACCGTCATGTCTCTGGCGCTGAGCATCCTCAGCATGCTCTCTAGCGCC
AAGGAGAAGCGCCTCCCAGAAGACAACGCTACACGTCTCTGGCGCTGAGC
ATCCTCAGCATGCTCTCTAGCGCCAAGGAGAAGCGCCTCCCAGAAGACAA
CGCTACACATGCGGAAGCGAGACCAGGGCAGGCTCAACAGTGGATATACC
ACGATGATCTGTGTTAGATGCGGAAGCGAGACCAGGGCAGGCTCAACAGT
GGATATACCACGATGATCTGTGTTAG