mRNA_E-siliculosus-1a_F_contig1134.887.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI) HSP 1 Score: 961 bits (2484), Expect = 0.000e+0 Identity = 493/519 (94.99%), Postives = 505/519 (97.30%), Query Frame = 1
Query: 1 MITMQSTICVLFRCALLTHLRGDMAIGGDLTFSHIPKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLELAPCVEDRVQFEHDRSIANALRQGISRLGCVVNAVRPRKKKDKSTAPEQELRASSTPSEHKIHFSLAAIVGARPQEATIASPTDKVIVEIRSGSEHDFLKSGTTGPLIGKVALHTKFKGAKHLAYETEHFFESLSQQATPTRQSRKQQHQAEKERQKQPTPSRDDDCVPAVRFTKVLRVFGRRGEGSS 1557
MI MQSTI +LFR ALLTH+RGDMAIGGDLTFSHIPKVLKGCLHTICQNCAE+GLQRSK GSSIMCPLCGVSTS VTSTSAL DNIVALQDVHRKNSHCDFCDDVAKASH+C+ECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHR GLTRR VSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRA+KTQ LNAQLAKLGQVMRAYE ALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLEL PCVEDRV+FEHDRSIANALRQGISRLGCVVNAVRPRKKK+KSTAPEQEL ASSTPSEH IHFSLAAIVGARPQEAT+ASPTDKVIVEIRSGSEHDFLKSGTTGP+IG+VALHTKFKGAKHLAYETEHFFESLSQ+ATPTRQSRKQQHQAEKERQKQPTPSRD DCVPAVRFTKVLRVFGRRGEGSS
Sbjct: 1 MIAMQSTIFLLFRRALLTHVRGDMAIGGDLTFSHIPKVLKGCLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDVTSTSALQDNIVALQDVHRKNSHCDFCDDVAKASHVCHECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRAGLTRRGVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAQKTQDLNAQLAKLGQVMRAYEIALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLELTPCVEDRVEFEHDRSIANALRQGISRLGCVVNAVRPRKKKEKSTAPEQELHASSTPSEHNIHFSLAAIVGARPQEATLASPTDKVIVEIRSGSEHDFLKSGTTGPVIGRVALHTKFKGAKHLAYETEHFFESLSQRATPTRQSRKQQHQAEKERQKQPTPSRDGDCVPAVRFTKVLRVFGRRGEGSS 519
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: UPI001425AA88 (tripartite motif-containing protein 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AA88) HSP 1 Score: 85.9 bits (211), Expect = 1.110e-13 Identity = 78/291 (26.80%), Postives = 124/291 (42.61%), Query Frame = 1
Query: 106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCG----VSTSGVTSTSALPDNIVALQDVHRKNS-------------HCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLK------NREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS------VFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDST 891
PK L CLH+ C+ C + +++S G ++CP C +ST GV D ++ +H + +CD CD A+ C +C LC H RGTK+HR++SLK +RE +C H E + FC+ C IC C+V H H V+ + E++ + R+ L R+ S R R + +E + GVE S V + A+D R++E+++ L+ K L Q+ G+VM + + T
Sbjct: 525 PKSLP-CLHSFCRECLQQHVKKSDG--RLICPQCRKDCPLSTDGV-------DGLLDSHFIHNLSEFVEQGGTAKDAVPNCDGCD--RDANDRCLDCPCPLCPECSKMHKRMRGTKTHRIISLKEYNSLSDREKIMMQPTSCPYHPRCELEFFCTV-CEVPICMKCAVCGHEDHKRMNLVDVYEKQAMEIDSL-RNKLAERLKSFEEVAGRTRAVAETLEKEEKGVE-------SQIVDHAERMHEAIDKRKEELIRELKMKSKSKKDILRRQVNNYGEVMHSLHDTYEKT 794
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A6P5AZG9_BRABE (protein PML-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AZG9_BRABE) HSP 1 Score: 70.9 bits (172), Expect = 3.960e-9 Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1
Query: 106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLC---------GVSTSGVTSTSALPDNIVALQDVHRKNSH-----CDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASH-------RVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEH 549
PK+L CLHT C++C + +Q++ G + CP+C GV G+ + S L + A+ + H+ C CD+ A+ C ECA LC + H R TK+H + + + + R C++H KL+C C IC C++ EH
Sbjct: 27 PKILIPCLHTFCEHCLREWVQKNDG-DTFPCPICRQPVPLPQDGV--DGLKNNSHLASLVKAVTEHHKIRQGKDVLVCTSCDEGKPATSRCSECAEFLCANCESVHRRVRATKAHTLFTFEELKTGKYDKVFRARTAPPCSKHSGEILKLYC-RTCEAPICSECALFEH 191
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A6J8D946_MYTCO (TRIM56 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8D946_MYTCO) HSP 1 Score: 62.8 bits (151), Expect = 1.120e-6 Identity = 53/184 (28.80%), Postives = 78/184 (42.39%), Query Frame = 1
Query: 64 GDMAIGGDLTFSHIPKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSA--LPDN--IVALQDV----HRKNSHCDFCDDVAK---ASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKN-REASH------RVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS 561
GD+ G P++L CLH++C C + L +K +I CP C T +++ A P N ++ + DV H + HC CD +K A C +C LC AHS +R T H V+SL SH + + C H +C C +C C + +H HS
Sbjct: 13 GDIVCGVCNKVFQKPRMLP-CLHSMCFECLQRILDTNKTADTIECPTCE-ETIEISAHDAREFPSNEYLITIIDVYFSRHGGDKHCAICDLRSKKIQAKFKCVDCEDFLCESCGGAHSSTRMTIEHNVLSLDELARGSHDDIIRDKRMMHCEHHEKEVLDHYCKS-CNILVCRECRLGDHFDHS 193
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A8I6SRA9_CIMLE (Uncharacterized protein n=4 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6SRA9_CIMLE) HSP 1 Score: 60.1 bits (144), Expect = 1.020e-5 Identity = 64/247 (25.91%), Postives = 106/247 (42.91%), Query Frame = 1
Query: 265 LQDVHRKNSHCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREAS---------------HRVQITCARHRDVE----AKLFCSEPCGTTICHNCSVAEHSGHS-VFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDA---VEAVKTGVEKHTRLAESATVQAFSA-------IRAA---VDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTSLE 906
LQD + C CD+ AKA+ C +C LLC + AH + TK H +V + + + S + + + H D+ KL+C + C T+IC C++ EH GHS V+ D+ E G R A VR DA ++VK ++ R+ +S +++ IR A ++ RE+++L + R K + + Q+ L V+ Y + + LE
Sbjct: 137 LQDKNDSQCLCHNCDECAKATSRCKDCDELLCDSCVRAHIRVKLTKDHCIVRITDSQQSPTFNNASSIASSGSPNSTILNDSTHCDIHLTETVKLYC-DTCCTSICGECTMREHRGHSFVYLQDAIE----------------GARAASVRLITDAKMGAQSVKECLDISQRMIDSVNLKSHEVGREIRTMIRKAKVVLEDRERDLLMKVDKIRVMKQKAIQQQIDGLRAVLSCYSNTSEMLSDVLE 366
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A6H5GPX5_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GPX5_9HEMI) HSP 1 Score: 59.3 bits (142), Expect = 1.680e-5 Identity = 60/248 (24.19%), Postives = 105/248 (42.34%), Query Frame = 1
Query: 247 PDNIV--ALQDVHRKNSHCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQIT----------------------CARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS-VFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRA---AVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTSLE 906
P++I+ L D C CD+ +KA+ C +C LLC + AH + TK H +V L++ S ++ C H KL+C + C +IC C+V +H GHS ++ D+ + + L +G + AR D ++ + +E + + S + S IR A++ RE+E++ + R K + L Q+ L + Y D+ T+L+
Sbjct: 23 PEDIINELLLDKQEVTPVCHSCDECSKATSKCKDCDELLCDRCVRAHIRVKLTKDHFIVPLEDPLQSSPPFVSKSPSGNSSGSGGSSSILNGNTLCESHLSETVKLYC-DTCCVSICTECTVLDHRGHSFIYLQDALDGARSAASRLLSDA-KIGSQSAR-----DCIDMTQRMIENVSLKSHSIIREIKSMIRKFRFALEERERELINKVEKLRVLKQKSLQQQMEGLKALHTCYSHTSDAIATALD 263
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: UPI0018855882 (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018855882) HSP 1 Score: 58.9 bits (141), Expect = 1.930e-5 Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = 1
Query: 106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCDFCDD---VAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS--VFFSDSAEVEQ 594
PK+L GCLHT+C CA+ Q S G C LC S+ + L + ++ Q +++ C C + A AS C EC++ LC + AH V++ T H + ++ A Q C+ H +C + C T C C ++ H H + AEV++
Sbjct: 89 PKLLTGCLHTVCAPCAQ---QCSSAG--FQCQLCMTSSPSLLDH-PLVEELLQRQHEEQRSRLCGQCAERGGQAAASGTCTECSTDLCNVCIQAHRVTKPTWGHNIDVCQDSCA----QQQCSSHYKTFDN-YC-DTCNTLGCGECILSAHRSHQSCTLLAKDAEVKE 244
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: UPI001C920A7D (mucin-19-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C920A7D) HSP 1 Score: 59.3 bits (142), Expect = 2.250e-5 Identity = 58/228 (25.44%), Postives = 99/228 (43.42%), Query Frame = 1
Query: 100 HIPKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCDFCDDVAK---ASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGH--SVFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDS 768
H P++L GCLHT+C +CA + G C LC ++ V L + ++ + V + + C C + + A+ C EC + LC + AH+ ++ T H + + + A R C HR +C + C T C +C ++ H H S AEV+ L +RL R R ++ +T + + A++A + + I AA D+
Sbjct: 59 HTPRLLPGCLHTVCGSCAGNLSSNPDG---FQCRLCMTKSAEVLDH-PLVEELLQREHVQQCSRLCGQCGERGREAIAAGACAECCTELCQDCIEAHNQTKLTWDHSITAYNDDSAHQR----CPEHRKAYDN-YC-DTCQTVGCGDCILSSHRSHKSSTLEHKQAEVK-----------AQLTNRLDRTRKQRKQLDEQRTQLRQRIGEAKAAKESSVNDIIAAHDA 265
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: C3Y9M9_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y9M9_BRAFL) HSP 1 Score: 57.4 bits (137), Expect = 6.460e-5 Identity = 56/191 (29.32%), Postives = 77/191 (40.31%), Query Frame = 1
Query: 106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCG----VSTSGVTSTSALPDNIVA--LQDVHRKNSH--------------CDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKN-------REASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS-VFFSDSAEVEQ 594
PKVL CLHT CQ C E L G + CP C + +GV L N + L D+ R+ C C+ A C EC LC H +GT+SH+V+++K+ E R C H ++ K +C + C IC +C V H H V +AE E+
Sbjct: 26 PKVLP-CLHTFCQPCLERLLATEPVGK-LSCPTCRQDVPLPENGVQ---GLKSNFLVGKLHDILRQQPKGSKESSEPQTEGIPCTACERGNPAEFYCVECTDYLCHVCNETHRGLKGTRSHKVLTIKDVQSGKFVAELRSRETSKCEDHNELN-KFYC-DTCYRVICLHCVVTAHKDHQYVEIEKAAERER 209 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1134.887.1 >prot_E-siliculosus-1a_F_contig1134.887.1 ID=prot_E-siliculosus-1a_F_contig1134.887.1|Name=mRNA_E-siliculosus-1a_F_contig1134.887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=520bp MITMQSTICVLFRCALLTHLRGDMAIGGDLTFSHIPKVLKGCLHTICQNCback to top mRNA from alignment at E-siliculosus-1a_F_contig1134:17689..19886- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1134.887.1 ID=mRNA_E-siliculosus-1a_F_contig1134.887.1|Name=mRNA_E-siliculosus-1a_F_contig1134.887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2198bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:17689..19886- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1134:17689..19886- >mRNA_E-siliculosus-1a_F_contig1134.887.1 ID=mRNA_E-siliculosus-1a_F_contig1134.887.1|Name=mRNA_E-siliculosus-1a_F_contig1134.887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3120bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:17689..19886- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |