mRNA_E-siliculosus-1a_F_contig1134.887.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1134.887.1
Unique NamemRNA_E-siliculosus-1a_F_contig1134.887.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: D7FQY5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY5_ECTSI)

HSP 1 Score: 961 bits (2484), Expect = 0.000e+0
Identity = 493/519 (94.99%), Postives = 505/519 (97.30%), Query Frame = 1
Query:    1 MITMQSTICVLFRCALLTHLRGDMAIGGDLTFSHIPKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLELAPCVEDRVQFEHDRSIANALRQGISRLGCVVNAVRPRKKKDKSTAPEQELRASSTPSEHKIHFSLAAIVGARPQEATIASPTDKVIVEIRSGSEHDFLKSGTTGPLIGKVALHTKFKGAKHLAYETEHFFESLSQQATPTRQSRKQQHQAEKERQKQPTPSRDDDCVPAVRFTKVLRVFGRRGEGSS 1557
            MI MQSTI +LFR ALLTH+RGDMAIGGDLTFSHIPKVLKGCLHTICQNCAE+GLQRSK GSSIMCPLCGVSTS VTSTSAL DNIVALQDVHRKNSHCDFCDDVAKASH+C+ECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHR GLTRR VSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRA+KTQ LNAQLAKLGQVMRAYE ALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLEL PCVEDRV+FEHDRSIANALRQGISRLGCVVNAVRPRKKK+KSTAPEQEL ASSTPSEH IHFSLAAIVGARPQEAT+ASPTDKVIVEIRSGSEHDFLKSGTTGP+IG+VALHTKFKGAKHLAYETEHFFESLSQ+ATPTRQSRKQQHQAEKERQKQPTPSRD DCVPAVRFTKVLRVFGRRGEGSS
Sbjct:    1 MIAMQSTIFLLFRRALLTHVRGDMAIGGDLTFSHIPKVLKGCLHTICQNCAEEGLQRSKDGSSIMCPLCGVSTSDVTSTSALQDNIVALQDVHRKNSHCDFCDDVAKASHVCHECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVHRAGLTRRGVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAQKTQDLNAQLAKLGQVMRAYEIALDSTNTSLERLHGDQFLAMEPTIRECLDAREAEFPSLELTPCVEDRVEFEHDRSIANALRQGISRLGCVVNAVRPRKKKEKSTAPEQELHASSTPSEHNIHFSLAAIVGARPQEATLASPTDKVIVEIRSGSEHDFLKSGTTGPVIGRVALHTKFKGAKHLAYETEHFFESLSQRATPTRQSRKQQHQAEKERQKQPTPSRDGDCVPAVRFTKVLRVFGRRGEGSS 519          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: UPI001425AA88 (tripartite motif-containing protein 2-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AA88)

HSP 1 Score: 85.9 bits (211), Expect = 1.110e-13
Identity = 78/291 (26.80%), Postives = 124/291 (42.61%), Query Frame = 1
Query:  106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCG----VSTSGVTSTSALPDNIVALQDVHRKNS-------------HCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLK------NREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS------VFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDST 891
            PK L  CLH+ C+ C +  +++S G   ++CP C     +ST GV       D ++    +H  +              +CD CD    A+  C +C   LC      H   RGTK+HR++SLK      +RE       +C  H   E + FC+  C   IC  C+V  H  H       V+   + E++ + R+ L  R+ S      R R   + +E  + GVE       S  V     +  A+D R++E+++ L+     K   L  Q+   G+VM +     + T
Sbjct:  525 PKSLP-CLHSFCRECLQQHVKKSDG--RLICPQCRKDCPLSTDGV-------DGLLDSHFIHNLSEFVEQGGTAKDAVPNCDGCD--RDANDRCLDCPCPLCPECSKMHKRMRGTKTHRIISLKEYNSLSDREKIMMQPTSCPYHPRCELEFFCTV-CEVPICMKCAVCGHEDHKRMNLVDVYEKQAMEIDSL-RNKLAERLKSFEEVAGRTRAVAETLEKEEKGVE-------SQIVDHAERMHEAIDKRKEELIRELKMKSKSKKDILRRQVNNYGEVMHSLHDTYEKT 794          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A6P5AZG9_BRABE (protein PML-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AZG9_BRABE)

HSP 1 Score: 70.9 bits (172), Expect = 3.960e-9
Identity = 48/169 (28.40%), Postives = 76/169 (44.97%), Query Frame = 1
Query:  106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLC---------GVSTSGVTSTSALPDNIVALQDVHRKNSH-----CDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASH-------RVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEH 549
            PK+L  CLHT C++C  + +Q++ G  +  CP+C         GV   G+ + S L   + A+ + H+         C  CD+   A+  C ECA  LC    + H   R TK+H + + +  +          R    C++H     KL+C   C   IC  C++ EH
Sbjct:   27 PKILIPCLHTFCEHCLREWVQKNDG-DTFPCPICRQPVPLPQDGV--DGLKNNSHLASLVKAVTEHHKIRQGKDVLVCTSCDEGKPATSRCSECAEFLCANCESVHRRVRATKAHTLFTFEELKTGKYDKVFRARTAPPCSKHSGEILKLYC-RTCEAPICSECALFEH 191          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A6J8D946_MYTCO (TRIM56 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8D946_MYTCO)

HSP 1 Score: 62.8 bits (151), Expect = 1.120e-6
Identity = 53/184 (28.80%), Postives = 78/184 (42.39%), Query Frame = 1
Query:   64 GDMAIGGDLTFSHIPKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSA--LPDN--IVALQDV----HRKNSHCDFCDDVAK---ASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKN-REASH------RVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS 561
            GD+  G        P++L  CLH++C  C +  L  +K   +I CP C   T  +++  A   P N  ++ + DV    H  + HC  CD  +K   A   C +C   LC     AHS +R T  H V+SL      SH      +  + C  H       +C   C   +C  C + +H  HS
Sbjct:   13 GDIVCGVCNKVFQKPRMLP-CLHSMCFECLQRILDTNKTADTIECPTCE-ETIEISAHDAREFPSNEYLITIIDVYFSRHGGDKHCAICDLRSKKIQAKFKCVDCEDFLCESCGGAHSSTRMTIEHNVLSLDELARGSHDDIIRDKRMMHCEHHEKEVLDHYCKS-CNILVCRECRLGDHFDHS 193          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A8I6SRA9_CIMLE (Uncharacterized protein n=4 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6SRA9_CIMLE)

HSP 1 Score: 60.1 bits (144), Expect = 1.020e-5
Identity = 64/247 (25.91%), Postives = 106/247 (42.91%), Query Frame = 1
Query:  265 LQDVHRKNSHCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREAS---------------HRVQITCARHRDVE----AKLFCSEPCGTTICHNCSVAEHSGHS-VFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDA---VEAVKTGVEKHTRLAESATVQAFSA-------IRAA---VDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTSLE 906
            LQD +     C  CD+ AKA+  C +C  LLC   + AH   + TK H +V + + + S               +   +  + H D+      KL+C + C T+IC  C++ EH GHS V+  D+ E                G R A VR   DA    ++VK  ++   R+ +S  +++          IR A   ++ RE+++L  +   R  K + +  Q+  L  V+  Y    +  +  LE
Sbjct:  137 LQDKNDSQCLCHNCDECAKATSRCKDCDELLCDSCVRAHIRVKLTKDHCIVRITDSQQSPTFNNASSIASSGSPNSTILNDSTHCDIHLTETVKLYC-DTCCTSICGECTMREHRGHSFVYLQDAIE----------------GARAASVRLITDAKMGAQSVKECLDISQRMIDSVNLKSHEVGREIRTMIRKAKVVLEDRERDLLMKVDKIRVMKQKAIQQQIDGLRAVLSCYSNTSEMLSDVLE 366          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: A0A6H5GPX5_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GPX5_9HEMI)

HSP 1 Score: 59.3 bits (142), Expect = 1.680e-5
Identity = 60/248 (24.19%), Postives = 105/248 (42.34%), Query Frame = 1
Query:  247 PDNIV--ALQDVHRKNSHCDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQIT----------------------CARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS-VFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRA---AVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTSLE 906
            P++I+   L D       C  CD+ +KA+  C +C  LLC   + AH   + TK H +V L++   S    ++                      C  H     KL+C + C  +IC  C+V +H GHS ++  D+ +  +     L      +G + AR     D ++  +  +E  +  + S   +  S IR    A++ RE+E++  +   R  K + L  Q+  L  +   Y    D+  T+L+
Sbjct:   23 PEDIINELLLDKQEVTPVCHSCDECSKATSKCKDCDELLCDRCVRAHIRVKLTKDHFIVPLEDPLQSSPPFVSKSPSGNSSGSGGSSSILNGNTLCESHLSETVKLYC-DTCCVSICTECTVLDHRGHSFIYLQDALDGARSAASRLLSDA-KIGSQSAR-----DCIDMTQRMIENVSLKSHSIIREIKSMIRKFRFALEERERELINKVEKLRVLKQKSLQQQMEGLKALHTCYSHTSDAIATALD 263          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: UPI0018855882 (E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018855882)

HSP 1 Score: 58.9 bits (141), Expect = 1.930e-5
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = 1
Query:  106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCDFCDD---VAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS--VFFSDSAEVEQ 594
            PK+L GCLHT+C  CA+   Q S  G    C LC  S+  +     L + ++  Q   +++  C  C +    A AS  C EC++ LC   + AH V++ T  H +   ++  A    Q  C+ H       +C + C T  C  C ++ H  H      +  AEV++
Sbjct:   89 PKLLTGCLHTVCAPCAQ---QCSSAG--FQCQLCMTSSPSLLDH-PLVEELLQRQHEEQRSRLCGQCAERGGQAAASGTCTECSTDLCNVCIQAHRVTKPTWGHNIDVCQDSCA----QQQCSSHYKTFDN-YC-DTCNTLGCGECILSAHRSHQSCTLLAKDAEVKE 244          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: UPI001C920A7D (mucin-19-like n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C920A7D)

HSP 1 Score: 59.3 bits (142), Expect = 2.250e-5
Identity = 58/228 (25.44%), Postives = 99/228 (43.42%), Query Frame = 1
Query:  100 HIPKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCDFCDDVAK---ASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGH--SVFFSDSAEVEQVHRDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAIRAAVDS 768
            H P++L GCLHT+C +CA +      G     C LC   ++ V     L + ++  + V + +  C  C +  +   A+  C EC + LC   + AH+ ++ T  H + +  +  A  R    C  HR      +C + C T  C +C ++ H  H  S      AEV+             L +RL R R     ++  +T + +    A++A   + + I AA D+
Sbjct:   59 HTPRLLPGCLHTVCGSCAGNLSSNPDG---FQCRLCMTKSAEVLDH-PLVEELLQREHVQQCSRLCGQCGERGREAIAAGACAECCTELCQDCIEAHNQTKLTWDHSITAYNDDSAHQR----CPEHRKAYDN-YC-DTCQTVGCGDCILSSHRSHKSSTLEHKQAEVK-----------AQLTNRLDRTRKQRKQLDEQRTQLRQRIGEAKAAKESSVNDIIAAHDA 265          
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Match: C3Y9M9_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y9M9_BRAFL)

HSP 1 Score: 57.4 bits (137), Expect = 6.460e-5
Identity = 56/191 (29.32%), Postives = 77/191 (40.31%), Query Frame = 1
Query:  106 PKVLKGCLHTICQNCAEDGLQRSKGGSSIMCPLCG----VSTSGVTSTSALPDNIVA--LQDVHRKNSH--------------CDFCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKN-------REASHRVQITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHS-VFFSDSAEVEQ 594
            PKVL  CLHT CQ C E  L     G  + CP C     +  +GV     L  N +   L D+ R+                 C  C+    A   C EC   LC      H   +GT+SH+V+++K+        E   R    C  H ++  K +C + C   IC +C V  H  H  V    +AE E+
Sbjct:   26 PKVLP-CLHTFCQPCLERLLATEPVGK-LSCPTCRQDVPLPENGVQ---GLKSNFLVGKLHDILRQQPKGSKESSEPQTEGIPCTACERGNPAEFYCVECTDYLCHVCNETHRGLKGTRSHKVLTIKDVQSGKFVAELRSRETSKCEDHNELN-KFYC-DTCYRVICLHCVVTAHKDHQYVEIEKAAERER 209          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1134.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FQY5_ECTSI0.000e+094.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001425AA881.110e-1326.80tripartite motif-containing protein 2-like n=1 Tax... [more]
A0A6P5AZG9_BRABE3.960e-928.40protein PML-like n=1 Tax=Branchiostoma belcheri Ta... [more]
A0A6J8D946_MYTCO1.120e-628.80TRIM56 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=... [more]
A0A8I6SRA9_CIMLE1.020e-525.91Uncharacterized protein n=4 Tax=Cimex lectularius ... [more]
A0A6H5GPX5_9HEMI1.680e-524.19Uncharacterized protein (Fragment) n=1 Tax=Nesidio... [more]
UPI00188558821.930e-529.17E3 ubiquitin-protein ligase TRIM33-like n=1 Tax=Po... [more]
UPI001C920A7D2.250e-525.44mucin-19-like n=1 Tax=Amphibalanus amphitrite TaxI... [more]
C3Y9M9_BRAFL6.460e-529.32Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1134contigE-siliculosus-1a_F_contig1134:17689..19886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1560
Model size1762
Exons3
Ec32 orthologEc-09_003280.1
Ec32 ortholog descriptionSecreted RING/FYVE/PHD-type and B-box zinc finger protein
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000,ko01001,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC2.3.2.27
EggNOG OGsKOG2177@1,KOG2177@2759
EggNOG free text desc.zinc ion binding
KEGG koko:K08883
Seed eggNOG ortholog2880.D7FQY5
Seed ortholog evalue7.9e-280
Seed ortholog score969.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1134.887.1prot_E-siliculosus-1a_F_contig1134.887.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1134 17891..19886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927644.9936018-UTR-E-siliculosus-1a_F_contig1134:17688..178901622927644.9936018-UTR-E-siliculosus-1a_F_contig1134:17688..17890Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1134 17689..17890 -
1696318622.575249-UTR-E-siliculosus-1a_F_contig1134:17688..178901696318622.575249-UTR-E-siliculosus-1a_F_contig1134:17688..17890Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1134 17689..17890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927645.0071526-CDS-E-siliculosus-1a_F_contig1134:17890..186611622927645.0071526-CDS-E-siliculosus-1a_F_contig1134:17890..18661Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1134 17891..18661 -
1696318622.5848315-CDS-E-siliculosus-1a_F_contig1134:17890..186611696318622.5848315-CDS-E-siliculosus-1a_F_contig1134:17890..18661Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1134 17891..18661 -
1622927645.058551-CDS-E-siliculosus-1a_F_contig1134:18802..189501622927645.058551-CDS-E-siliculosus-1a_F_contig1134:18802..18950Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1134 18803..18950 -
1696318622.5923705-CDS-E-siliculosus-1a_F_contig1134:18802..189501696318622.5923705-CDS-E-siliculosus-1a_F_contig1134:18802..18950Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1134 18803..18950 -
1622927645.1740096-CDS-E-siliculosus-1a_F_contig1134:19245..198861622927645.1740096-CDS-E-siliculosus-1a_F_contig1134:19245..19886Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1134 19246..19886 -
1696318622.6022434-CDS-E-siliculosus-1a_F_contig1134:19245..198861696318622.6022434-CDS-E-siliculosus-1a_F_contig1134:19245..19886Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1134 19246..19886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1134.887.1

>prot_E-siliculosus-1a_F_contig1134.887.1 ID=prot_E-siliculosus-1a_F_contig1134.887.1|Name=mRNA_E-siliculosus-1a_F_contig1134.887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=520bp
MITMQSTICVLFRCALLTHLRGDMAIGGDLTFSHIPKVLKGCLHTICQNC
AEDGLQRSKGGSSIMCPLCGVSTSGVTSTSALPDNIVALQDVHRKNSHCD
FCDDVAKASHMCYECASLLCTFHMTAHSVSRGTKSHRVVSLKNREASHRV
QITCARHRDVEAKLFCSEPCGTTICHNCSVAEHSGHSVFFSDSAEVEQVH
RDGLTRRVVSLGHRLARVRGGLDAVEAVKTGVEKHTRLAESATVQAFSAI
RAAVDSREKEILKNLRADRAEKTQGLNAQLAKLGQVMRAYEAALDSTNTS
LERLHGDQFLAMEPTIRECLDAREAEFPSLELAPCVEDRVQFEHDRSIAN
ALRQGISRLGCVVNAVRPRKKKDKSTAPEQELRASSTPSEHKIHFSLAAI
VGARPQEATIASPTDKVIVEIRSGSEHDFLKSGTTGPLIGKVALHTKFKG
AKHLAYETEHFFESLSQQATPTRQSRKQQHQAEKERQKQPTPSRDDDCVP
AVRFTKVLRVFGRRGEGSS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1134:17689..19886-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1134.887.1 ID=mRNA_E-siliculosus-1a_F_contig1134.887.1|Name=mRNA_E-siliculosus-1a_F_contig1134.887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2198bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:17689..19886- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCACGATGCAATCTACAATTTGCGTGCTTTTCCGTTGTGCGCTTTT GACTCACCTCAGAGGAGATATGGCGATCGGGGGTGACCTCACATTCTCGC ACATTCCAAAGGTCCTGAAAGGTTGCTTGCATACGATCTGCCAGAATTGC GCAGAGGACGGGCTTCAGCGGTCGAAAGGTGGTTCATCGATCATGTGCCC GTTGTGCGGAGTGTCGACCTCCGGCGTGACTTCTACCTCGGCTCTTCCAG ACAACATCGTGGCTCTGCAAGATGTCCACAGGAAAAATAGCCATTGCGAC TTCTGCGACGACGTTGCCAAAGCTTCTCATATGTGCTATGAGTGTGCGAG CCTCCTTTGCACATTCCACATGACTGCCCACTCCGTGTCCAGAGGCACAA AATCGCACCGTGTTGTTTCCCTGAAAAACCGCGAGGCCTCCCATCGTGTT CAGATCACATGCGCTCGGCACAGGGACGTTGAAGCAAAGCTGTTCTGCTC AGAGCCTTGTGGCACTACCATTTGCCACAATTGTAGTGTCGCTGAGCACT CGGGCCACAGCGTGTTCTTTTCCGACTCAGCCGAAGTGGAACAAGTACAT CGTGACGGCCTTACCCGTCGTGTGGTTTCTTTGGGTCACAGGTACGACCC CGAACGACAAAGGAAGAGTTGCATGTATAGTCTGTGCACCCGTGAGAGCA AACGCGCCTAGCTATTGTAATGCGCAAACAGTTGAGAACTGTTCGGCAAA TGGGGTTATCTGCACCAACCAGGTAAAACGTGCGCACAGCATGTATGTGC TTTGTTGGACTAGTCTAGCAGCTGAACTCTCGTACGTATAGCGTCCCCTC TTCGGAGTAATGCTTCAACGCACAAGTGGGGTCGCCCTGACACATAAATC TATGGTCGATCTTTACTTATTTGTGTTTGCTGACAGATTAGCTAGAGTGC GCGGTGGGTTGGACGCGGTGGAGGCCGTTAAAACAGGGGTGGAGAAGCAC ACGCGGTTGGCCGAAAGCGCTACAGTGCAAGCCTTTTCAGCAATTCGTGC AGCTGTGGACTCCAGGGAGAAGGAAATTCTCAAGGTAGACTTGTTTTGGT GTGGTGTTGCTCATCTATCGATGTACAGTGACATGCCGTGACCATGTCAT GCACCTCACAACTTTCGACAACAATTGTTTGCTTGTTCCCCTGCATACGG ACATTATGTGTCAAACCGTTGCCAGAATTTGCGAGCTGATCGGGCAGAAA AAACCCAGGGCTTGAACGCACAGTTGGCAAAGCTGGGGCAAGTTATGAGG GCATACGAAGCTGCTTTAGACTCTACGAACACGAGTCTGGAACGCTTACA CGGTGACCAGTTTTTGGCAATGGAGCCAACTATACGCGAGTGCTTAGATG CACGTGAGGCAGAATTTCCGTCACTAGAGCTTGCGCCATGTGTCGAAGAC CGCGTGCAATTCGAGCACGATCGAAGCATCGCCAACGCTCTCCGCCAAGG AATCTCTCGGCTCGGATGCGTGGTAAACGCAGTAAGACCAAGAAAGAAGA AAGACAAATCAACGGCACCCGAACAAGAGCTTCGTGCGTCATCGACACCA AGCGAACACAAAATCCATTTCTCTTTGGCAGCAATCGTCGGGGCCCGCCC TCAAGAAGCAACAATCGCGAGTCCTACCGACAAAGTTATTGTCGAGATAA GGAGCGGGTCGGAGCACGACTTCCTGAAGAGTGGAACTACCGGTCCTTTG ATCGGCAAGGTGGCGCTCCACACGAAGTTTAAAGGTGCCAAGCATCTGGC ATACGAAACGGAACATTTCTTCGAGTCTTTATCACAACAAGCAACACCTA CACGGCAGTCGCGGAAGCAGCAGCATCAGGCGGAGAAAGAGCGGCAAAAA CAACCAACACCATCACGCGACGACGATTGCGTGCCCGCCGTCCGCTTCAC TAAGGTGTTACGCGTTTTCGGGAGGCGAGGGGAAGGCTCGTCTTGAGGCA CGCATGACAAATACAATTTACAACGTTTGAGTCAAGAAGACGCCAAGAGA CGTAATATCTACACGAGCATAGGGTTTGGGGCGCTGCGGCACGCTCCCGC TCGTAAATAGAGGACCAAACGCGCCTCTAATACCGAAGAATGATCAGAGC GAGCGGTTTGTACGTACTATCTGTGTTTTGTCGTCGACTGCAACCACC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1134:17689..19886-

>mRNA_E-siliculosus-1a_F_contig1134.887.1 ID=mRNA_E-siliculosus-1a_F_contig1134.887.1|Name=mRNA_E-siliculosus-1a_F_contig1134.887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3120bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:17689..19886- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCACGATGCAATCTACAATTTGCGTGCTTTTCCGTTGTGCGCTTTT
GACTCACCTCAGAGGAGATATGGCGATCGGGGGTGACCTCACATTCTCGC
ACATTCCAAAGGTCCTGAAAGGTTGCTTGCATACGATCTGCCAGAATTGC
GCAGAGGACGGGCTTCAGCGGTCGAAAGGTGGTTCATCGATCATGTGCCC
GTTGTGCGGAGTGTCGACCTCCGGCGTGACTTCTACCTCGGCTCTTCCAG
ACAACATCGTGGCTCTGCAAGATGTCCACAGGAAAAATAGCCATTGCGAC
TTCTGCGACGACGTTGCCAAAGCTTCTCATATGTGCTATGAGTGTGCGAG
CCTCCTTTGCACATTCCACATGACTGCCCACTCCGTGTCCAGAGGCACAA
AATCGCACCGTGTTGTTTCCCTGAAAAACCGCGAGGCCTCCCATCGTGTT
CAGATCACATGCGCTCGGCACAGGGACGTTGAAGCAAAGCTGTTCTGCTC
AGAGCCTTGTGGCACTACCATTTGCCACAATTGTAGTGTCGCTGAGCACT
CGGGCCACAGCGTGTTCTTTTCCGACTCAGCCGAAGTGGAACAAGTACAT
CGTGACGGCCTTACCCGTCGTGTGGTTTCTTTGGGTCACAGATGATCACG
ATGCAATCTACAATTTGCGTGCTTTTCCGTTGTGCGCTTTTGACTCACCT
CAGAGGAGATATGGCGATCGGGGGTGACCTCACATTCTCGCACATTCCAA
AGGTCCTGAAAGGTTGCTTGCATACGATCTGCCAGAATTGCGCAGAGGAC
GGGCTTCAGCGGTCGAAAGGTGGTTCATCGATCATGTGCCCGTTGTGCGG
AGTGTCGACCTCCGGCGTGACTTCTACCTCGGCTCTTCCAGACAACATCG
TGGCTCTGCAAGATGTCCACAGGAAAAATAGCCATTGCGACTTCTGCGAC
GACGTTGCCAAAGCTTCTCATATGTGCTATGAGTGTGCGAGCCTCCTTTG
CACATTCCACATGACTGCCCACTCCGTGTCCAGAGGCACAAAATCGCACC
GTGTTGTTTCCCTGAAAAACCGCGAGGCCTCCCATCGTGTTCAGATCACA
TGCGCTCGGCACAGGGACGTTGAAGCAAAGCTGTTCTGCTCAGAGCCTTG
TGGCACTACCATTTGCCACAATTGTAGTGTCGCTGAGCACTCGGGCCACA
GCGTGTTCTTTTCCGACTCAGCCGAAGTGGAACAAGTACATCGTGACGGC
CTTACCCGTCGTGTGGTTTCTTTGGGTCACAGATTAGCTAGAGTGCGCGG
TGGGTTGGACGCGGTGGAGGCCGTTAAAACAGGGGTGGAGAAGCACACGC
GGTTGGCCGAAAGCGCTACAGTGCAAGCCTTTTCAGCAATTCGTGCAGCT
GTGGACTCCAGGGAGAAGGAAATTCTCAAGATTAGCTAGAGTGCGCGGTG
GGTTGGACGCGGTGGAGGCCGTTAAAACAGGGGTGGAGAAGCACACGCGG
TTGGCCGAAAGCGCTACAGTGCAAGCCTTTTCAGCAATTCGTGCAGCTGT
GGACTCCAGGGAGAAGGAAATTCTCAAGAATTTGCGAGCTGATCGGGCAG
AAAAAACCCAGGGCTTGAACGCACAGTTGGCAAAGCTGGGGCAAGTTATG
AGGGCATACGAAGCTGCTTTAGACTCTACGAACACGAGTCTGGAACGCTT
ACACGGTGACCAGTTTTTGGCAATGGAGCCAACTATACGCGAGTGCTTAG
ATGCACGTGAGGCAGAATTTCCGTCACTAGAGCTTGCGCCATGTGTCGAA
GACCGCGTGCAATTCGAGCACGATCGAAGCATCGCCAACGCTCTCCGCCA
AGGAATCTCTCGGCTCGGATGCGTGGTAAACGCAGTAAGACCAAGAAAGA
AGAAAGACAAATCAACGGCACCCGAACAAGAGCTTCGTGCGTCATCGACA
CCAAGCGAACACAAAATCCATTTCTCTTTGGCAGCAATCGTCGGGGCCCG
CCCTCAAGAAGCAACAATCGCGAGTCCTACCGACAAAGTTATTGTCGAGA
TAAGGAGCGGGTCGGAGCACGACTTCCTGAAGAGTGGAACTACCGGTCCT
TTGATCGGCAAGGTGGCGCTCCACACGAAGTTTAAAGGTGCCAAGCATCT
GGCATACGAAACGGAACATTTCTTCGAGTCTTTATCACAACAAGCAACAC
CTACACGGCAGTCGCGGAAGCAGCAGCATCAGGCGGAGAAAGAGCGGCAA
AAACAACCAACACCATCACGCGACGACGATTGCGTGCCCGCCGTCCGCTT
CACTAAGGTGTTACGCGTTTTCGGGAGGCGAGGGGAAGGCTCGTCTTGAA
ATTTGCGAGCTGATCGGGCAGAAAAAACCCAGGGCTTGAACGCACAGTTG
GCAAAGCTGGGGCAAGTTATGAGGGCATACGAAGCTGCTTTAGACTCTAC
GAACACGAGTCTGGAACGCTTACACGGTGACCAGTTTTTGGCAATGGAGC
CAACTATACGCGAGTGCTTAGATGCACGTGAGGCAGAATTTCCGTCACTA
GAGCTTGCGCCATGTGTCGAAGACCGCGTGCAATTCGAGCACGATCGAAG
CATCGCCAACGCTCTCCGCCAAGGAATCTCTCGGCTCGGATGCGTGGTAA
ACGCAGTAAGACCAAGAAAGAAGAAAGACAAATCAACGGCACCCGAACAA
GAGCTTCGTGCGTCATCGACACCAAGCGAACACAAAATCCATTTCTCTTT
GGCAGCAATCGTCGGGGCCCGCCCTCAAGAAGCAACAATCGCGAGTCCTA
CCGACAAAGTTATTGTCGAGATAAGGAGCGGGTCGGAGCACGACTTCCTG
AAGAGTGGAACTACCGGTCCTTTGATCGGCAAGGTGGCGCTCCACACGAA
GTTTAAAGGTGCCAAGCATCTGGCATACGAAACGGAACATTTCTTCGAGT
CTTTATCACAACAAGCAACACCTACACGGCAGTCGCGGAAGCAGCAGCAT
CAGGCGGAGAAAGAGCGGCAAAAACAACCAACACCATCACGCGACGACGA
TTGCGTGCCCGCCGTCCGCTTCACTAAGGTGTTACGCGTTTTCGGGAGGC
GAGGGGAAGGCTCGTCTTGA
back to top