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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1134.884.1 vs. uniprot
Match: D7FQY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQY2_ECTSI) HSP 1 Score: 517 bits (1331), Expect = 2.730e-185 Identity = 253/261 (96.93%), Postives = 256/261 (98.08%), Query Frame = 1
Query: 1 VESVNVAHSSPDCLQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASVWERSWTSMRCVVA---ETPPSLSTCISISVLVLPRGTKLEWHRYHEARSFSRQLFGNLIICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVAIRTPEESSREACWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIPSQTEDAVELIETLTPLGVKPGVCRYLGPSVDLRG 774
+ESVNVAHSSPD LQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASVWERSWTSMRCVVA ETPPSLSTCIS+SVLVLPRGTKLEWHRYHEARSFSRQLFGNL ICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVA+RTPEESSREACWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIPSQTEDAVELIETLTPLGVKPGVCRYLGPSVDLRG
Sbjct: 1 MESVNVAHSSPDGLQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASVWERSWTSMRCVVADTAETPPSLSTCISMSVLVLPRGTKLEWHRYHEARSFSRQLFGNLSICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGRCPRMWDCPFWVDRRRAEAKGSSAHVALRTPEESSREACWRAGPQTVRRIEALEPSALLEVHVGPRNTRYYKEIPSQTEDAVELIETLTPLGVKPGVCRYLGPSVDLRG 261
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 777 |
| Model size | 777 |
| Exons | 6 |
| Ec32 ortholog | Ec-09_003310.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1134.884.1 >prot_E-siliculosus-1a_F_contig1134.884.1 ID=prot_E-siliculosus-1a_F_contig1134.884.1|Name=mRNA_E-siliculosus-1a_F_contig1134.884.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=259bp
VESVNVAHSSPDCLQRLAEALRADPNLADLHNVEELMTEVDSDAFPQASV
WERSWTSMRCVVAETPPSLSTCISISVLVLPRGTKLEWHRYHEARSFSRQ
LFGNLIICDAELQGSDNARKLEQQELEATYADGWAVGGSEESDCVCRGGR
CPRMWDCPFWVDRRRAEAKGSSAHVAIRTPEESSREACWRAGPQTVRRIE
ALEPSALLEVHVGPRNTRYYKEIPSQTEDAVELIETLTPLGVKPGVCRYL
GPSVDLRG* back to topmRNA from alignment at E-siliculosus-1a_F_contig1134:1657..3820+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1134.884.1 ID=mRNA_E-siliculosus-1a_F_contig1134.884.1|Name=mRNA_E-siliculosus-1a_F_contig1134.884.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2164bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:1657..3820+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGAGAGCGTCAACGTAGCTCATTCAAGCCCAGACTGCCTCCAGAGGCT
TGCGGAAGCTCTCCGTGCCGACCCCAACCTGGCTGACCTACACAATGTGG
AGGAGCTGATGACGGAGGTGCGTATTGCACACAGCTCTAGCTCTAGTTGA
CAAAGGTTAGAGTTAGAAAAGACAAAAGAGGAGATATAGGACGATTGCCC
ACACTATGTTTTGTTGTGTGCGACGTCGCGAGCTCGAAGAGCACCAAACA
TCAAGATTAAATATGACCTCCAAAAGAGTTGGTGGACTTCGGCAAACTCT
CACCTTTACCTGACACTTATCGTATGATCGTACATGCGCGTACACAGCAG
TTCCTTAGAACAAACTGCAGATCTGAACGCCGACACACCCCGTCAACCAT
GCCATCTCACACAGCAAAGTGAGTATTTTTTCAAAACTATGTATCGACTT
CTCTTGTGCGTTCGCGACAGCTGCGTTGCCAGCACCAGCCAAACAACTCC
TCCTGTACTTGTATGCCGCTGTGAGTGTCCATCAAACACATATGGCAGTG
ACCCGGCACCCTCACTACCCTAAGGTCTCTGTGATCTTTGACAGGTGGAC
AGTGATGCTTTCCCGCAGGCTTCGGTTTGGGAGAGAAGTTGGACGTCGAT
GAGATGTGTCGTAGCAGAGACACCACCCTCTCTCAGCACGTGCATTTCCA
TCAGCGTTTTGGTCCTACCACGTGAGTACTGCTGTTTCTCGCAGGCCACA
GAAAGATTCGCGAACTACTGTACCTGGTGGTATGGCTGCGTTGTGTTGTC
CGTGAGCACGTATTCAAGGCGTCTCATTTCATCCGAGTCTGCATTTCTTG
ATTTGGGCCCGGGAACTGCCATTGTGAAGGTCTACAAATGGATTCTAGAT
TTGGGCCCGGGAACTGCCATTATTGAAAAATTGCAAAGGTCTACAAATGG
ATTTCTCATTGCTCTTGCCTGTTGGACATGTTCAGGAGGCACCAAGCTCG
AGTGGCACCGATATCACGAAGCTCGGAGTTTTTCGAGGCAACTTTTCGGG
AATTTGATCATCTGTGATGCAGAGCTCCAAGGATCTGGTGAGGCTCTCAT
CGCTGTACACCCAACAAGAGATATGAAACAACCTGTATGGGATCAATTTC
CATTGTTCTGCACTTTAACGGTACATTACAAGCAAACGGCCCCATGCACG
TACCCAGTACGGGAGTACGGTCCTGGTTCCATTGTTCTCGCAAACTTGGC
CTCATCAGACAATGCGCGGAAGCTGGAGCAACAGGAGCTTGAGGCGACGT
ATGCGGATGGCTGGGCAGTGGGAGGCAGCGAGGAGAGCGACTGTGTGTGC
AGGGGAGGGAGATGCCCTCGAATGTGGGACTGCCCTTTCTGGGTCGACCG
GAGAAGGGCAGAAGCCAAGGGCAGCAGTGCTCATGTGCGTCCGCAAATAG
GGAATACCTACTCCCAGTTGTCTTGACGCGTGGTACATTGTCCCATGACC
ATCTACGACAGCTGTGTCTGCACAAGAGACTACTAGGCACGCCAGCGACC
AGTCACGCATTGTTGCCAACTTAGTAAGATTGGGCCCTGCGTGTGGTGTG
TACTCCGTTGCATTTGCAGGAAATCAGTAGGTGTCGTGTAGATAGACTAC
CGCTCTCCGCTCTGTGACTGCCAAGCAACGGATCGGCTGCACGGAGTCAA
GCTGATCAACTCCCCCGTCCCGTACGATCTTCAGGTTGCAATCAGAACCC
CAGAAGAATCATCTCGTGAGGCCTGTTGGAGAGCGGGACCTCAAACTGTG
AGGCGAATAGAAGCGCTAGAGCCTTCCGCTCTTCTCGAAGTCCACGTTGG
TCCAAGAAATACACGTTACTACAAGGAGGTGAGAGTAGGAAAAATCTCAA
GACACAACGCAGCTTTGAATGTCGGAAATGTTTTCAGCAACGGGTTTGCC
ACGACATCAAATGCGGCACCTGAGCATCGCTCTAAAATGTACCCCAACTC
CCTACGTCATGTCTCGCTTATTGTGCGCATTGCACTACGCGCGCACCGCA
CAGATTCCGTCACAGACGGAGGACGCGGTGGAGCTAATCGAAACCTTGAC
GCCGCTTGGAGTCAAGCCAGGCGTTTGTCGATACCTCGGACCCTCTGTGG
ATCTTCGAGGGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1134:1657..3820+ >mRNA_E-siliculosus-1a_F_contig1134.884.1 ID=mRNA_E-siliculosus-1a_F_contig1134.884.1|Name=mRNA_E-siliculosus-1a_F_contig1134.884.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:1657..3820+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGAGAGCGTCAACGTAGCTCATTCAAGCCCAGACTGCCTCCAGAGGCT
TGCGGAAGCTCTCCGTGCCGACCCCAACCTGGCTGACCTACACAATGTGG
AGGAGCTGATGACGGAGGTGGAGAGCGTCAACGTAGCTCATTCAAGCCCA
GACTGCCTCCAGAGGCTTGCGGAAGCTCTCCGTGCCGACCCCAACCTGGC
TGACCTACACAATGTGGAGGAGCTGATGACGGAGGTGGACAGTGATGCTT
TCCCGCAGGCTTCGGTTTGGGAGAGAAGTTGGACGTCGATGAGATGTGTC
GTAGCAGAGACACCACCCTCTCTCAGCACGTGCATTTCCATCAGCGTTTT
GGTCCTACCACGTGGACAGTGATGCTTTCCCGCAGGCTTCGGTTTGGGAG
AGAAGTTGGACGTCGATGAGATGTGTCGTAGCAGAGACACCACCCTCTCT
CAGCACGTGCATTTCCATCAGCGTTTTGGTCCTACCACGAGGCACCAAGC
TCGAGTGGCACCGATATCACGAAGCTCGGAGTTTTTCGAGGCAACTTTTC
GGGAATTTGATCATCTGTGATGCAGAGCTCCAAGGATCTGGAGGCACCAA
GCTCGAGTGGCACCGATATCACGAAGCTCGGAGTTTTTCGAGGCAACTTT
TCGGGAATTTGATCATCTGTGATGCAGAGCTCCAAGGATCTGACAATGCG
CGGAAGCTGGAGCAACAGGAGCTTGAGGCGACGTATGCGGATGGCTGGGC
AGTGGGAGGCAGCGAGGAGAGCGACTGTGTGTGCAGGGGAGGGAGATGCC
CTCGAATGTGGGACTGCCCTTTCTGGGTCGACCGGAGAAGGGCAGAAGCC
AAGGGCAGCAGTGCTCATACAATGCGCGGAAGCTGGAGCAACAGGAGCTT
GAGGCGACGTATGCGGATGGCTGGGCAGTGGGAGGCAGCGAGGAGAGCGA
CTGTGTGTGCAGGGGAGGGAGATGCCCTCGAATGTGGGACTGCCCTTTCT
GGGTCGACCGGAGAAGGGCAGAAGCCAAGGGCAGCAGTGCTCATGTTGCA
ATCAGAACCCCAGAAGAATCATCTCGTGAGGCCTGTTGGAGAGCGGGACC
TCAAACTGTGAGGCGAATAGAAGCGCTAGAGCCTTCCGCTCTTCTCGAAG
TCCACGTTGGTCCAAGAAATACACGTTACTACAAGGAGGTTGCAATCAGA
ACCCCAGAAGAATCATCTCGTGAGGCCTGTTGGAGAGCGGGACCTCAAAC
TGTGAGGCGAATAGAAGCGCTAGAGCCTTCCGCTCTTCTCGAAGTCCACG
TTGGTCCAAGAAATACACGTTACTACAAGGAGATTCCGTCACAGACGGAG
GACGCGGTGGAGCTAATCGAAACCTTGACGCCGCTTGGAGTCAAGCCAGG
CGTTTGTCGATACCTCGGACCCTCTGTGGATCTTCGAGGGTAGATTCCGT
CACAGACGGAGGACGCGGTGGAGCTAATCGAAACCTTGACGCCGCTTGGA
GTCAAGCCAGGCGTTTGTCGATACCTCGGACCCTCTGTGGATCTTCGAGG
GTAG back to top
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