mRNA_E-siliculosus-1a_F_contig11338.883.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A6H5KEK3_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK3_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.880e-35 Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 2
Query: 596 LYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLLR 874
LYKG T DA NGH+T+LVGKRR VPAELKE+TKGWDVVGVDVEN+ +PLYIQNPKK+AIITRLK AS K TD+DREGEAISWHLL+
Sbjct: 125 LYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKGWDVVGVDVENDFKPLYIQNPKKKAIITRLKKASAKCDE-IILATDEDREGEAISWHLLQ 216
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI) HSP 1 Score: 139 bits (350), Expect = 6.900e-33 Identity = 71/93 (76.34%), Postives = 78/93 (83.87%), Query Frame = 2
Query: 596 LYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLLR 874
LYKG T DA NGH+T+LVGKRR VPAELKE+TKGWDVVGVDVEN+ EPLYIQNPKK+AIITRLK AS K TD+DREGEAISWHLL+
Sbjct: 119 LYKGYTVDACNGHVTDLVGKRRDVPAELKEQTKGWDVVGVDVENDFEPLYIQNPKKKAIITRLKKASAKCDE-IILATDEDREGEAISWHLLQ 210
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A835Z3T3_9STRA (DNA topoisomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T3_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 3.700e-13 Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 503 VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLLR 874
VIVESPAK RTI L G G D+ GH+ +L VPA LK++ W +GV+V+ + EPLYI +P K+A+I RLK ++ TD+DREGEAISWHL++
Sbjct: 354 VIVESPAKARTIQTFL--------------GESSGFVIDSCAGHIRDLPSSATQVPAALKKEK--WATMGVNVDKDFEPLYIISPGKKAVIDRLKQLASTCDE-IILATDEDREGEAISWHLVQ 460
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A5Q4F9C0_9BACT (DNA topoisomerase 1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A5Q4F9C0_9BACT) HSP 1 Score: 80.1 bits (196), Expect = 7.750e-13 Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 2
Query: 503 VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLL 871
+IVESP K +TI + L K+ D+ NGH+ +L + +PA+LK+ W +G+D++N+ EPLY+ +P+K+ + RLK K TD+DREGE ISWH++
Sbjct: 5 IIVESPTKAKTIKKFLPKSVSV----------------DSCNGHIRDLPASAKEIPAKLKKNK--WANLGIDIDNDYEPLYVVSPQKKKTVARLKKLI-KEVDELILATDEDREGEGISWHIV 108
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A5C6AEF0_9BACT (DNA topoisomerase 1 n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AEF0_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 2.560e-12 Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 2
Query: 503 VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHL 868
VIVESPAK RTI++ L +A GH+ +L G + +P + K+++ W +GVDV+N+ EP+YI P K+ +T+LK A K TD+DREGEAISWHL
Sbjct: 10 VIVESPAKARTISKFLGSGYQV----------------EASVGHVRDLPGGAKDIPEKYKKES--WAYLGVDVDNDFEPVYIVPPDKKKQVTKLKEAL-KGADSLYLATDEDREGEAISWHL 112
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A8J7UUH5_9BACT (DNA topoisomerase 1 n=1 Tax=Natronogracilivirgula saccharolytica TaxID=2812953 RepID=A0A8J7UUH5_9BACT) HSP 1 Score: 77.8 bits (190), Expect = 4.510e-12 Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 2
Query: 503 VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHL 868
+IVESP K +TI + L K D+ NGH+ +L + +PA+LK+ W +G+D++N EPLY+ P K+ +TRLK +S TD+DREGE ISWH+
Sbjct: 5 IIVESPTKAKTIKKFLPKHMSV----------------DSCNGHIRDLPASAKEIPAKLKKNK--WANLGIDLDNNYEPLYVIPPTKKKTVTRLKKLIKESDE-LILATDEDREGEGISWHI 107
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A2P4UNK9_9ACTN (DNA topoisomerase 1 n=4 Tax=Actinomadura TaxID=1988 RepID=A0A2P4UNK9_9ACTN) HSP 1 Score: 77.8 bits (190), Expect = 4.590e-12 Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 2
Query: 494 PGD-----VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHL 868
PGD VIVESPAK +TI L + G ++ GH+ +L G VPA K K + W +GV+VENE EPLY+ N KRA + +LK ++ TD+DREGEAI+WHL
Sbjct: 13 PGDDGTRLVIVESPAKAKTIAGYLGR----------------GYVVESSIGHIRDLPGSASEVPA--KYKGEAWAKLGVNVENEFEPLYVVNADKRAQVAKLKKLLAEADE-LLLATDEDREGEAIAWHL 123
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: UPI0009F8F75C (type I DNA topoisomerase n=1 Tax=Vaginimicrobium propionicum TaxID=1871034 RepID=UPI0009F8F75C) HSP 1 Score: 77.4 bits (189), Expect = 6.080e-12 Identity = 50/123 (40.65%), Postives = 64/123 (52.03%), Query Frame = 2
Query: 503 VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLL 871
VIVESP K I L + ++ GH+ +L VPA K KT+ W +GVD++++ PLYI NP+KRA I RLK KS TD+DREGEAI+WHLL
Sbjct: 8 VIVESPTKANKIASFLGEDYIV----------------ESSRGHVRDLPNNASEVPA--KYKTQAWSRLGVDIDHDFAPLYIVNPEKRATIKRLKE-QLKSADELYLATDEDREGEAIAWHLL 111
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A2H0L3E9_9BACT (DNA topoisomerase 1 n=1 Tax=Candidatus Peregrinibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_41_10 TaxID=1974792 RepID=A0A2H0L3E9_9BACT) HSP 1 Score: 77.0 bits (188), Expect = 8.110e-12 Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 503 VIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLLR 874
VIVESP K +TI++ L K GH+ +L + +PA+ K++ W +GVDVEN EPLY+ +P K+ + +L + S K TD+DREGEAISWHLL+
Sbjct: 6 VIVESPTKAKTISKFLPKGYEVLSSM----------------GHIRDLPSSAKEIPAKYKKEK--WASLGVDVENNFEPLYVISPNKKKTVKQLVD-SLKGVDELILATDEDREGEAISWHLLQ 110
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Match: A0A077JFY7_9CYAN (DNA topoisomerase 1 n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A077JFY7_9CYAN) HSP 1 Score: 76.6 bits (187), Expect = 1.100e-11 Identity = 49/127 (38.58%), Postives = 65/127 (51.18%), Query Frame = 2
Query: 494 PGDVIVESPAKPRTITELLKKAXXXXXXXXXXXGLYKG*TGDA*NGHMTNLVGKRRHVPAELKEKTKGWDVVGVDVENELEPLYIQNPKKRAIITRLKNASTKSTR*SCTTTDQDREGEAISWHLLR 874
P VIVESP K RTI L K +A GH+ +L VPA KEK+ W +G+++EN EPLYI K+ ++ LK A ++ TD+DREGE+ISWHLL+
Sbjct: 2 PTLVIVESPTKARTIRNYLPKGYRV----------------EASMGHVRDLPASAEEVPASYKEKS--WSNLGINIENNFEPLYIVPKNKKKVVQELKFALKEADE-LILATDKDREGESISWHLLQ 109 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11338.883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11338.883.1 >prot_E-siliculosus-1a_F_contig11338.883.1 ID=prot_E-siliculosus-1a_F_contig11338.883.1|Name=mRNA_E-siliculosus-1a_F_contig11338.883.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=173bp MSPDRPRVGVGGPTSPRRGLDAAVFVVGLVGLSLLPYLPPPPLPLPPLPPback to top mRNA from alignment at E-siliculosus-1a_F_contig11338:667..1982+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11338.883.1 ID=mRNA_E-siliculosus-1a_F_contig11338.883.1|Name=mRNA_E-siliculosus-1a_F_contig11338.883.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1316bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11338:667..1982+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11338:667..1982+ >mRNA_E-siliculosus-1a_F_contig11338.883.1 ID=mRNA_E-siliculosus-1a_F_contig11338.883.1|Name=mRNA_E-siliculosus-1a_F_contig11338.883.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11338:667..1982+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |