mRNA_E-siliculosus-1a_F_contig1133.881.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1133.881.1
Unique NamemRNA_E-siliculosus-1a_F_contig1133.881.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1133.881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1133contigE-siliculosus-1a_F_contig1133:30332..32162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size261
Model size261
Exons2
Ec32 orthologEc-13_000160.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927644.2918699-CDS-E-siliculosus-1a_F_contig1133:30331..304111622927644.2918699-CDS-E-siliculosus-1a_F_contig1133:30331..30411Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 30332..30411 +
1696318622.2338114-CDS-E-siliculosus-1a_F_contig1133:30331..304111696318622.2338114-CDS-E-siliculosus-1a_F_contig1133:30331..30411Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 30332..30411 +
1622927644.3086858-CDS-E-siliculosus-1a_F_contig1133:31981..321621622927644.3086858-CDS-E-siliculosus-1a_F_contig1133:31981..32162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 31982..32162 +
1696318622.2411005-CDS-E-siliculosus-1a_F_contig1133:31981..321621696318622.2411005-CDS-E-siliculosus-1a_F_contig1133:31981..32162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 31982..32162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1133.881.1prot_E-siliculosus-1a_F_contig1133.881.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1133 30332..32162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1133.881.1

>prot_E-siliculosus-1a_F_contig1133.881.1 ID=prot_E-siliculosus-1a_F_contig1133.881.1|Name=mRNA_E-siliculosus-1a_F_contig1133.881.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
IKRCIGSAQAIENHAIHSRNGCSPSTVHQQAGTNETWAYERRATPGRTPP
VTGMTASASDAATVGKEKAREIATLGSKLKVTTRLR*
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mRNA from alignment at E-siliculosus-1a_F_contig1133:30332..32162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1133.881.1 ID=mRNA_E-siliculosus-1a_F_contig1133.881.1|Name=mRNA_E-siliculosus-1a_F_contig1133.881.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1831bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1133:30332..32162+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTAAGCGCTGCATTGGGTCAGCTCAAGCGATAGAGAACCACGCGATTCA
CTCCAGGAATGGGTGTTCGCCCTCCACGGTGTTCGCCCTACACGTCCGAT
AGCGCAATCGTCTCCGTACGTCTGGGTACACAATGAATAGATCTACCGTT
TCGGACGAATTCCGTATAGCCCGTACCACTGAGAAGCAAGACACCCTGCC
CTTTTTCGATCGTTTGCCGCAACGTTGACTATTATTATCGCTTTGGAACG
TGTGCAGTAGGCCCTTGATTTCGCACCCAGCCACTCATGAGGCACGCATT
GCGGAGTGTACCTGCAAACCCGAAGCAAGGAAAATGGCCGCGCCTATCCA
CGCGCGTTGTCTTCCTTGCCATTGCCTTGCTTGCTTTGATCTGGGTAAAA
CGGCAGCTGTATTTGTTTCTGGACGGAGGTAGTGCAGGGTGCATGTGGTG
CTGTAGGTTTGGTTGTTGCGGGGTTCAGGGGGTCGTTTTGGCCAGGGATT
GCTTTCCCCTTTCTGGAACCAGCACCTGCTGTTGAGTACAAGATGGGGGA
GAGGCATCGTCCTTTTCACGTCGGTGTTCACCAAACCTAACACCTTACCC
ACGTGTGACTTACACAGAACACCTCGCTAAAGCAATTACCTTTTGCTGTT
GTACAGATGGCCATAGAAACCGTGCAGTTTGCGGAAAGGCGCGTGAAATT
GACAAAGGAGTTTCAACGCTGAGAATTTTGAGGCCGTATGCTACCCGTTG
CCTAAAGCGTGTAGACTAACTTTACGACAACTGTGGTTGCATGCATACTG
TACTGCTGCCGAGGGCTCTTTTTTTGGACGTGAGACCTGTTGGTTTTGGT
ACCATTGGCGATAGATTCCAGTGCTCAAGCTGATCGCGTCTAAAACAGCG
AAAGCCCGACTGTTGACACCGCTGCGTCCGACGGTGGATGCAGGCAGCCC
ACCGCAAGAAGTCAATCACGGAGTGTAAGGGCGGTCTTACTTCGGCGATC
ATGCCCGGCGAGGCCATGGATGAATTGGAAATACGGGCGATGAATGGCAG
GATTCATTATGTGCAGACCAAGCGGGCCGTGACACTCGAAGCCCGCGCCG
CCGCGCGAGCCACCCACACACAAGATCAAAGAGCAGACTTCAAGGCAAGT
GGAATATACATTTCATAACTGGGAGCTTGGGCCTTTTGGTCGTTGTTTAG
AAAGTTTTCTTTTTTTTTCCTCGGTTCCCCAGTTGACCCTGCCACGAGAT
GAAGAGGTCAGCATCGTAACATGGGTAGCGAGTGTCGCTAGAATCCCAAA
CAGTTAGAAGTCTCGACGCGATGTGTGAGGTAACGGCAATTTGCCTTCCA
GTCTGTGGGTTTAATCTAATGGCACCCTAGATGCCCATCTACCGGCAAGA
GATGTTGATCTCTTCGCTTCTGTTTATGCGAACATGCGAACATCGTCGCA
TCAAACACCGCCCATCCGAACCGATCACCTCAAGGCTACGTTCTTGGAGC
TTTCGTGCGCAACATTATCCCGCCAGAATACGACTGGTTTCCAAGTGCAT
GGTCACGTCCACGTGGCGTTTCGTTCACCGGTGGTTTACACCTACCTATC
TTTTCCTACCTTACGTGGGCTTGCCTTCTTGCATGGAATTCTGGCTGCAG
GCACCAGCAAGCGGGAACGAACGAGACATGGGCTTACGAGAGAAGGGCAA
CCCCGGGCCGGACGCCACCGGTGACAGGCATGACAGCAAGCGCCAGCGAT
GCAGCGACGGTGGGAAAGGAAAAGGCAAGGGAGATCGCGACCCTCGGAAG
TAAGCTCAAGGTCACCACCCGGCTCCGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1133:30332..32162+

>mRNA_E-siliculosus-1a_F_contig1133.881.1 ID=mRNA_E-siliculosus-1a_F_contig1133.881.1|Name=mRNA_E-siliculosus-1a_F_contig1133.881.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1133:30332..32162+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTAAGCGCTGCATTGGGTCAGCTCAAGCGATAGAGAACCACGCGATTCA
CTCCAGGAATGGGTGTTCGCCCTCCACGGTATTAAGCGCTGCATTGGGTC
AGCTCAAGCGATAGAGAACCACGCGATTCACTCCAGGAATGGGTGTTCGC
CCTCCACGGTGCACCAGCAAGCGGGAACGAACGAGACATGGGCTTACGAG
AGAAGGGCAACCCCGGGCCGGACGCCACCGGTGACAGGCATGACAGCAAG
CGCCAGCGATGCAGCGACGGTGGGAAAGGAAAAGGCAAGGGAGATCGCGA
CCCTCGGAAGTAAGCTCAAGGTCACCACCCGGCTCCGTTGAGCACCAGCA
AGCGGGAACGAACGAGACATGGGCTTACGAGAGAAGGGCAACCCCGGGCC
GGACGCCACCGGTGACAGGCATGACAGCAAGCGCCAGCGATGCAGCGACG
GTGGGAAAGGAAAAGGCAAGGGAGATCGCGACCCTCGGAAGTAAGCTCAA
GGTCACCACCCGGCTCCGTTGA
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