mRNA_E-siliculosus-1a_F_contig1133.880.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1133.880.1
Unique NamemRNA_E-siliculosus-1a_F_contig1133.880.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1133.880.1 vs. uniprot
Match: D7FWY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY1_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 7.350e-85
Identity = 129/171 (75.44%), Postives = 137/171 (80.12%), Query Frame = 1 
Query:    1 RRSFMPWSKELPRALACSAYRVRQIWRRGVIWTTVVRTAFAPTHPANIAASHEEKNTRGRYSLYEGFGERILVGLKTLQRGHMIVAACPWSGYCWLGYLE*EKDADATATFLRDVVLPEVEDIKGSWTPTPEDRSNPDSG*VSIRITEKQG---QVLERSLASARARDQGL 504
            RR FMPWSKELP+AL CSAY VRQIWRRGVIWTT VRTA +PT         ++K TR R +LYEGF ERILVGLK L RGHM VA CPWSG CWLGYL+ EKDADA ATFLRDVVL EVE IKGSWTPTPEDRSNPDSG VS+ ITEK G   +VLERSL SARARDQGL
Sbjct:    2 RRIFMPWSKELPKALVCSAYHVRQIWRRGVIWTTAVRTAMSPTRKRMGFGKEKQKKTRDRRNLYEGFQERILVGLKPLLRGHMFVAVCPWSGCCWLGYLDQEKDADAMATFLRDVVLREVEGIKGSWTPTPEDRSNPDSGEVSMGITEKHGSVFKVLERSLVSARARDQGL 172
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1133.880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWY1_ECTSI7.350e-8575.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1133contigE-siliculosus-1a_F_contig1133:27139..28448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size291
Model size534
Exons5
Ec32 orthologEc-13_000150.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927644.1702943-UTR-E-siliculosus-1a_F_contig1133:27138..271501622927644.1702943-UTR-E-siliculosus-1a_F_contig1133:27138..27150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 27139..27150 +
1696318622.175619-UTR-E-siliculosus-1a_F_contig1133:27138..271501696318622.175619-UTR-E-siliculosus-1a_F_contig1133:27138..27150Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 27139..27150 +
1622927644.2291725-UTR-E-siliculosus-1a_F_contig1133:27891..280441622927644.2291725-UTR-E-siliculosus-1a_F_contig1133:27891..28044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 27892..28044 +
1696318622.2084448-UTR-E-siliculosus-1a_F_contig1133:27891..280441696318622.2084448-UTR-E-siliculosus-1a_F_contig1133:27891..28044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 27892..28044 +
1622927644.2410002-UTR-E-siliculosus-1a_F_contig1133:28272..283151622927644.2410002-UTR-E-siliculosus-1a_F_contig1133:28272..28315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 28273..28315 +
1696318622.2165382-UTR-E-siliculosus-1a_F_contig1133:28272..283151696318622.2165382-UTR-E-siliculosus-1a_F_contig1133:28272..28315Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 28273..28315 +
1622927644.2535307-UTR-E-siliculosus-1a_F_contig1133:28413..284481622927644.2535307-UTR-E-siliculosus-1a_F_contig1133:28413..28448Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 28414..28448 +
1696318622.2264605-UTR-E-siliculosus-1a_F_contig1133:28413..284481696318622.2264605-UTR-E-siliculosus-1a_F_contig1133:28413..28448Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1133 28414..28448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927644.1907272-CDS-E-siliculosus-1a_F_contig1133:27150..272521622927644.1907272-CDS-E-siliculosus-1a_F_contig1133:27150..27252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 27151..27252 +
1696318622.1854265-CDS-E-siliculosus-1a_F_contig1133:27150..272521696318622.1854265-CDS-E-siliculosus-1a_F_contig1133:27150..27252Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 27151..27252 +
1622927644.2015948-CDS-E-siliculosus-1a_F_contig1133:27440..274761622927644.2015948-CDS-E-siliculosus-1a_F_contig1133:27440..27476Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 27441..27476 +
1696318622.1935182-CDS-E-siliculosus-1a_F_contig1133:27440..274761696318622.1935182-CDS-E-siliculosus-1a_F_contig1133:27440..27476Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 27441..27476 +
1622927644.2160854-CDS-E-siliculosus-1a_F_contig1133:27738..278911622927644.2160854-CDS-E-siliculosus-1a_F_contig1133:27738..27891Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 27739..27891 +
1696318622.2009513-CDS-E-siliculosus-1a_F_contig1133:27738..278911696318622.2009513-CDS-E-siliculosus-1a_F_contig1133:27738..27891Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1133 27739..27891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1133.880.1prot_E-siliculosus-1a_F_contig1133.880.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1133 27151..27891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1133.880.1

>prot_E-siliculosus-1a_F_contig1133.880.1 ID=prot_E-siliculosus-1a_F_contig1133.880.1|Name=mRNA_E-siliculosus-1a_F_contig1133.880.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=97bp
MPWSKELPRALACSAYRVRQIWRRGVIWTTVVRTAFAPTHPANIAASHEE
KNTRGRYSLYEGFGERILVGLKTLQRGHMIVAACPWSGYCWLGYLE*
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mRNA from alignment at E-siliculosus-1a_F_contig1133:27139..28448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1133.880.1 ID=mRNA_E-siliculosus-1a_F_contig1133.880.1|Name=mRNA_E-siliculosus-1a_F_contig1133.880.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1310bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1133:27139..28448+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGCGGAGTTTTATGCCGTGGTCAAAGGAATTGCCGAGGGCGCTGGCCTG
CTCTGCCTATCGTGTCCGCCAGATCTGGAGGAGAGGGGTGATCTGGACGA
CTGTAGTGAGGACGGTAAGCACTTAACGCTTTTTTCTTTTTGCAACGACC
CCCTCCACGGGACCGCCTCTGTTGCGAGAAAATACGTTTAGGAGGAGCTA
GAACAGGGAGGGGGTACTCAGACCCGATCCCCTAACCCTAATCCAATTTC
CCCGATTGCATGCTTTGTCGGACATGTTTGCCGAATACGAAAACCTGTGA
AGGCTTTTGCCCCCACGCATCCCGCCAATATTGCCGCAGTCGTATATACT
GTCGTGTTGCCCCTATCTTTCGTTGCTGCTGCCTTCGCCGATGATGGTTC
GTCGAAACGTATCCATTTGTCAACATGTTCCGAAACTAGAAAATGCGGGT
TTGAGCTGCCCCCTCATCTGCCGGCGAGCAACGCCGAAATACGCACGGTG
ACTCCAATAATTCCAATAATCACCAAGCGTCGCCTTGATATTGCACCATC
CCCCCACATGTCTCATCTGAAACGTGACTTACTTAACTCTAGGCGATGAG
TCCCACGAGGAAAAGAACACCCGGGGCAGGTATAGCCTGTACGAGGGTTT
CGGGGAGAGGATTCTCGTCGGCCTGAAGACACTACAACGGGGACACATGA
TCGTAGCCGCCTGCCCTTGGTCGGGCTACTGCTGGCTAGGATACCTCGAA
TAAGAGAAGGACGCCGATGCAACGGCCACCTTCTTGCGCGACGTTGTGCT
TCCCGAGGTAGAGGACATCAAGGGGAGCTGGACGCCCACTCCCGAGGACC
GTTCAAATCCTGACAGCGGATAGGTCAGCATCCGCATCACCGAGAAACAA
GGTCAGGTTATCGATCACACGTTCCCCACGTCTTCCACGTCTTGCACAAT
ATACCGAATATCCCTCACGGCAGAAATGTTTGCTGGAGACCACACGTTGG
CTTTGGAGCGGTGGACGCCGGATGCTCTCGCCCTTTCAGCCCCGGCCCGG
CCCGTCAAAAGTTGCCTGACAACTGCTCACAAGCCTCACTACCTTCGAAC
TACGTCCGCCCCCCCTCGCTTGCCTTACGGTCAGGTGCTGGAGCGGTCTT
TAGCCTCGGCGCGAGCACGCGACCAAGGTACAGTGCGACATGTATGCGCC
GATATTCCTTTCGAAAAGGCCAACGGTATTGTTGCTTGCCGCACACAACC
ATGCAGCCGCCCTCTGCCCTTTCAGGATTGCGTTTGCCAGGCACAAGTCG
TGGGTGGGCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1133:27139..28448+

>mRNA_E-siliculosus-1a_F_contig1133.880.1 ID=mRNA_E-siliculosus-1a_F_contig1133.880.1|Name=mRNA_E-siliculosus-1a_F_contig1133.880.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1133:27139..28448+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGTGGTCAAAGGAATTGCCGAGGGCGCTGGCCTGCTCTGCCTATCG
TGTCCGCCAGATCTGGAGGAGAGGGGTGATCTGGACGACTGTAGTGAGGA
CGATGCCGTGGTCAAAGGAATTGCCGAGGGCGCTGGCCTGCTCTGCCTAT
CGTGTCCGCCAGATCTGGAGGAGAGGGGTGATCTGGACGACTGTAGTGAG
GACGGCTTTTGCCCCCACGCATCCCGCCAATATTGCCGCAGCTTTTGCCC
CCACGCATCCCGCCAATATTGCCGCATCCCACGAGGAAAAGAACACCCGG
GGCAGGTATAGCCTGTACGAGGGTTTCGGGGAGAGGATTCTCGTCGGCCT
GAAGACACTACAACGGGGACACATGATCGTAGCCGCCTGCCCTTGGTCGG
GCTACTGCTGGCTAGGATACCTCGAATAATCCCACGAGGAAAAGAACACC
CGGGGCAGGTATAGCCTGTACGAGGGTTTCGGGGAGAGGATTCTCGTCGG
CCTGAAGACACTACAACGGGGACACATGATCGTAGCCGCCTGCCCTTGGT
CGGGCTACTGCTGGCTAGGATACCTCGAATAA
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