mRNA_E-siliculosus-1a_F_contig1132.875.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1132.875.1
Unique NamemRNA_E-siliculosus-1a_F_contig1132.875.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1132.875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1132contigE-siliculosus-1a_F_contig1132:15103..15528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size300
Model size428
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927642.9845252-UTR-E-siliculosus-1a_F_contig1132:15102..152281622927642.9845252-UTR-E-siliculosus-1a_F_contig1132:15102..15228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1132 15103..15228 +
1696318621.6768787-UTR-E-siliculosus-1a_F_contig1132:15102..152281696318621.6768787-UTR-E-siliculosus-1a_F_contig1132:15102..15228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1132 15103..15228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927642.9990826-CDS-E-siliculosus-1a_F_contig1132:15228..155281622927642.9990826-CDS-E-siliculosus-1a_F_contig1132:15228..15528Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1132 15229..15528 +
1696318621.6872418-CDS-E-siliculosus-1a_F_contig1132:15228..155281696318621.6872418-CDS-E-siliculosus-1a_F_contig1132:15228..15528Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1132 15229..15528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1132.875.1prot_E-siliculosus-1a_F_contig1132.875.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1132 15229..15528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1132.875.1

>prot_E-siliculosus-1a_F_contig1132.875.1 ID=prot_E-siliculosus-1a_F_contig1132.875.1|Name=mRNA_E-siliculosus-1a_F_contig1132.875.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=100bp
MSGWTQNRTPRQPFLFPTRSTTVIIHRKEQTKQATRTRSEKPQRTAVPSI
TTRLVTAKRQGILSQEYTHSVEPPAEHSQLSHVPENSHSHRKREHTGKDT
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mRNA from alignment at E-siliculosus-1a_F_contig1132:15103..15528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1132.875.1 ID=mRNA_E-siliculosus-1a_F_contig1132.875.1|Name=mRNA_E-siliculosus-1a_F_contig1132.875.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=426bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1132:15103..15528+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCATCACGGGCCACCAAATGTCGAAAACTTCATTCACCATCCGTCCCTC
GCCGGCCATCTACCCCCTTACCTCAATCGCAACCACGTAAACTACTACTG
TACAAGCGGCAAACAAATATTAAAACATGTCTGGATGGACACAGAACAGG
ACACCACGCCAACCCTTTTTATTTCCGACACGTTCTACCACCGTTATTAT
TCACAGAAAAGAACAAACTAAACAAGCTACACGGACCAGGAGCGAGAAGC
CGCAGCGCACGGCCGTGCCATCTATAACCACCCGGCTCGTCACCGCTAAG
AGACAAGGGATATTAAGCCAAGAGTACACACACAGCGTAGAACCTCCGGC
AGAACACAGCCAATTGTCTCACGTACCCGAGAACAGCCACAGTCATAGGA
AAAGGGAACACACGGGCAAGGATACA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1132:15103..15528+

>mRNA_E-siliculosus-1a_F_contig1132.875.1 ID=mRNA_E-siliculosus-1a_F_contig1132.875.1|Name=mRNA_E-siliculosus-1a_F_contig1132.875.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1132:15103..15528+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTGGATGGACACAGAACAGGACACCACGCCAACCCTTTTTATTTCC
GACACGTTCTACCACCGTTATTATTCACAGAAAAGAACAAACTAAACAAG
CTACACGGACCAGGAGCGAGAAGCCGCAGCGCACGGCCGTGCCATCTATA
ACCACCCGGCTCGTCACCGCTAAGAGACAAGGGATATTAAGCCAAGAGTA
CACACACAGCGTAGAACCTCCGGCAGAACACAGCCAATTGTCTCACGTAC
CCGAGAACAGCCACAGTCATAGGAAAAGGGAACACACGGGCAAGGATACA
ATGTCTGGATGGACACAGAACAGGACACCACGCCAACCCTTTTTATTTCC
GACACGTTCTACCACCGTTATTATTCACAGAAAAGAACAAACTAAACAAG
CTACACGGACCAGGAGCGAGAAGCCGCAGCGCACGGCCGTGCCATCTATA
ACCACCCGGCTCGTCACCGCTAAGAGACAAGGGATATTAAGCCAAGAGTA
CACACACAGCGTAGAACCTCCGGCAGAACACAGCCAATTGTCTCACGTAC
CCGAGAACAGCCACAGTCATAGGAAAAGGGAACACACGGGCAAGGATACA
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