mRNA_E-siliculosus-1a_F_contig1132.873.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1132.873.1
Unique NamemRNA_E-siliculosus-1a_F_contig1132.873.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1132.873.1 vs. uniprot
Match: A0A6H5KDW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDW4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 9.010e-40
Identity = 81/97 (83.51%), Postives = 81/97 (83.51%), Query Frame = -1 
Query:    1 MFSSSVIRRGRRSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIHRCLAGAAARAPPARGA-------TAGKVQGSIASCCGTKHNPVLGLGNEQH 270
            MFSSSVIRRGR SLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIHRCLAGAAA A PARG         AGKVQ SI SCCGTKHN VL LGNEQH
Sbjct:    1 MFSSSVIRRGRCSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIHRCLAGAAATASPARGGGVASGEEAAGKVQASITSCCGTKHNLVLRLGNEQH 97
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BLAST of mRNA_E-siliculosus-1a_F_contig1132.873.1 vs. uniprot
Match: D7G9F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F9_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 8.100e-39
Identity = 80/97 (82.47%), Postives = 81/97 (83.51%), Query Frame = -1 
Query:    1 MFSSSVIRRGRRSLARPPAATRCNAIVVDRGQPQTSRKGQQHAAIHRCLAGAAARAPPARG-------ATAGKVQGSIASCCGTKHNPVLGLGNEQH 270
            MFSSSVIRRGR SLARPPAATRC  IVVDRGQPQTSRKGQQHAAIHRC AGAAA APPARG       A AGKVQGSIASCCGTKHN VLG G +QH
Sbjct:    1 MFSSSVIRRGRCSLARPPAATRCKVIVVDRGQPQTSRKGQQHAAIHRCPAGAAATAPPARGGGAPSGEAAAGKVQGSIASCCGTKHNLVLGPGIKQH 97
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1132.873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDW4_9PHAE9.010e-4083.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9F9_ECTSI8.100e-3982.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1132contigE-siliculosus-1a_F_contig1132:2028..2345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size318
Model size318
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927642.9392517-CDS-E-siliculosus-1a_F_contig1132:2027..23451622927642.9392517-CDS-E-siliculosus-1a_F_contig1132:2027..2345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1132 2028..2345 +
1696318621.6667905-CDS-E-siliculosus-1a_F_contig1132:2027..23451696318621.6667905-CDS-E-siliculosus-1a_F_contig1132:2027..2345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1132 2028..2345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1132.873.1prot_E-siliculosus-1a_F_contig1132.873.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1132 2028..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1132.873.1

>prot_E-siliculosus-1a_F_contig1132.873.1 ID=prot_E-siliculosus-1a_F_contig1132.873.1|Name=mRNA_E-siliculosus-1a_F_contig1132.873.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=106bp
MLLVPQPKYWIVLRPAATSDATLHLSRRCASSWWCPCRCACETPMDRRML
LTFPAGLWLTSVYYYRIATRCSGWSGQGAASPSDDTGREHHLCTSCSRLS
VVALTL
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mRNA from alignment at E-siliculosus-1a_F_contig1132:2028..2345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1132.873.1 ID=mRNA_E-siliculosus-1a_F_contig1132.873.1|Name=mRNA_E-siliculosus-1a_F_contig1132.873.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1132:2028..2345+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGCTCGTTCCCCAACCCAAGTACTGGATTGTGCTTCGTCCCGCAGC
AACTAGCGATGCTACCCTGCACCTTTCCCGCCGTTGCGCCTCTAGCTGGT
GGTGCCCTTGCCGCTGCGCCTGCGAGACACCGATGGATCGCCGCATGTTG
TTGACCTTTCCTGCTGGTCTGTGGTTGACCTCGGTCTACTACTATCGCAT
TGCAACGCGTTGCAGCGGGTGGTCTGGCCAGGGAGCGGCGTCCCCGTCGG
ATGACACTGGAAGAGAACATCACCTCTGCACGAGTTGCTCTCGCCTGTCT
GTCGTTGCGTTGACTCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1132:2028..2345+

>mRNA_E-siliculosus-1a_F_contig1132.873.1 ID=mRNA_E-siliculosus-1a_F_contig1132.873.1|Name=mRNA_E-siliculosus-1a_F_contig1132.873.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1132:2028..2345+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGCTCGTTCCCCAACCCAAGTACTGGATTGTGCTTCGTCCCGCAGC
AACTAGCGATGCTACCCTGCACCTTTCCCGCCGTTGCGCCTCTAGCTGGT
GGTGCCCTTGCCGCTGCGCCTGCGAGACACCGATGGATCGCCGCATGTTG
TTGACCTTTCCTGCTGGTCTGTGGTTGACCTCGGTCTACTACTATCGCAT
TGCAACGCGTTGCAGCGGGTGGTCTGGCCAGGGAGCGGCGTCCCCGTCGG
ATGACACTGGAAGAGAACATCACCTCTGCACGAGTTGCTCTCGCCTGTCT
GTCGTTGCGTTGACTCTGATGCTGCTCGTTCCCCAACCCAAGTACTGGAT
TGTGCTTCGTCCCGCAGCAACTAGCGATGCTACCCTGCACCTTTCCCGCC
GTTGCGCCTCTAGCTGGTGGTGCCCTTGCCGCTGCGCCTGCGAGACACCG
ATGGATCGCCGCATGTTGTTGACCTTTCCTGCTGGTCTGTGGTTGACCTC
GGTCTACTACTATCGCATTGCAACGCGTTGCAGCGGGTGGTCTGGCCAGG
GAGCGGCGTCCCCGTCGGATGACACTGGAAGAGAACATCACCTCTGCACG
AGTTGCTCTCGCCTGTCTGTCGTTGCGTTGACTCTG
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