mRNA_E-siliculosus-1a_F_contig11315.872.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11315.872.1
Unique NamemRNA_E-siliculosus-1a_F_contig11315.872.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11315.872.1 vs. uniprot
Match: D7G039_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G039_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 4.700e-133
Identity = 222/271 (81.92%), Postives = 238/271 (87.82%), Query Frame = 1 
Query:    1 QADEELLVEILVQGYENAVKDSPCPQAEQQHXXXXXXXXXVLNAVMEEQEASTAILTARAKVYAQQVATASENLQKAIAEAREQEAIADKARANRHARAMEYVGASAIYEGSQLYDEPSREQCKKRARQERKTMPFSNLRQTSEDNINELIWLQKQSHLEEARKNFEAEQKTLRTKKAERDQLAREHDKAETAASAALNALGDQVKQAEVDAFDSLLEFKQACADTPCNASRMNTLWAVCDVIDELVDGPSLQVISKRAGRRRTKRTRSSR 813
            +A+E+LLV ILVQGYENAVKDSPCPQAEQQH          L A M+E EASTA L ARAKVYAQQVA ASE+LQKAIAEAREQEAIADKARANRH RAM+YVGASAIYEGSQLYDEP REQCKKRARQERK MPFS+L+Q SED+I ELIWLQ+QSHL+EARKNFEAEQKTL TKKAERDQLAREHDKAETAASAAL +L  ++KQAEVDAFDSLLEFKQA ADTPC++SR NTLWAVCDVIDELVDGPS Q   K AGRRRTKRTRSSR
Sbjct:   67 EAEEDLLVSILVQGYENAVKDSPCPQAEQQHQHTTPKDE-ALYAAMKEHEASTAALAARAKVYAQQVAAASEDLQKAIAEAREQEAIADKARANRHDRAMQYVGASAIYEGSQLYDEPCREQCKKRARQERKPMPFSDLQQASEDDIYELIWLQRQSHLQEARKNFEAEQKTLLTKKAERDQLAREHDKAETAASAALESLRKRMKQAEVDAFDSLLEFKQAYADTPCDSSRFNTLWAVCDVIDELVDGPSPQQ-RKSAGRRRTKRTRSSR 335
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BLAST of mRNA_E-siliculosus-1a_F_contig11315.872.1 vs. uniprot
Match: A0A6H5K3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.080e-42
Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:  511 KTLRTKKAERDQLAREHDKAETAASAALNALGDQVKQAEVDAFDSLLEFKQACADTPCNASRMNTLWAVCDVIDELVDGPSLQVISKRAGRRRTKRTRSS 810
            KTL TK+AERDQLAREHDKAETAASAAL +LG +V QAEVDAFDSL+ FK+ACADTPC+ SR+ TLWAVCDVIDEL+D PS Q  SKRAGRRRTKRTRSS
Sbjct:    6 KTLHTKRAERDQLAREHDKAETAASAALESLGKRVTQAEVDAFDSLVGFKEACADTPCDCSRLKTLWAVCDVIDELMDEPSPQ--SKRAGRRRTKRTRSS 103
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11315.872.1 vs. uniprot
Match: A0A6H5K6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.600e-18
Identity = 59/84 (70.24%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    4 ADEELLVEILVQGYENAVKDSPCPQAEQQHXXXXXXXXXVLNAVMEEQEASTAILTARAKVYAQQVATASENLQKAIAEAREQE 255
            ADEELLV IL Q YEN+V DSPC QAEQQH         +  A M+EQEASTA L ARAK YAQ+VA ASENLQKAIAEAREQE
Sbjct:    6 ADEELLVSILPQEYENSVMDSPCRQAEQQHRHTTLGDDALYTA-MKEQEASTAALIARAKAYAQEVAAASENLQKAIAEAREQE 88
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11315.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G039_ECTSI4.700e-13381.92Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5K3X7_9PHAE1.080e-4281.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6A7_9PHAE2.600e-1870.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11315contigE-siliculosus-1a_F_contig11315:130..1409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size816
Model size816
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927642.8810668-CDS-E-siliculosus-1a_F_contig11315:129..1801622927642.8810668-CDS-E-siliculosus-1a_F_contig11315:129..180Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11315 130..180 -
1696318621.6387234-CDS-E-siliculosus-1a_F_contig11315:129..1801696318621.6387234-CDS-E-siliculosus-1a_F_contig11315:129..180Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11315 130..180 -
1622927642.8966749-CDS-E-siliculosus-1a_F_contig11315:644..14091622927642.8966749-CDS-E-siliculosus-1a_F_contig11315:644..1409Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11315 645..1409 -
1696318621.654071-CDS-E-siliculosus-1a_F_contig11315:644..14091696318621.654071-CDS-E-siliculosus-1a_F_contig11315:644..1409Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11315 645..1409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11315.872.1prot_E-siliculosus-1a_F_contig11315.872.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11315 130..1409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11315.872.1

>prot_E-siliculosus-1a_F_contig11315.872.1 ID=prot_E-siliculosus-1a_F_contig11315.872.1|Name=mRNA_E-siliculosus-1a_F_contig11315.872.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=272bp
QADEELLVEILVQGYENAVKDSPCPQAEQQHHRTTTLDDDVLNAVMEEQE
ASTAILTARAKVYAQQVATASENLQKAIAEAREQEAIADKARANRHARAM
EYVGASAIYEGSQLYDEPSREQCKKRARQERKTMPFSNLRQTSEDNINEL
IWLQKQSHLEEARKNFEAEQKTLRTKKAERDQLAREHDKAETAASAALNA
LGDQVKQAEVDAFDSLLEFKQACADTPCNASRMNTLWAVCDVIDELVDGP
SLQVISKRAGRRRTKRTRSSR*
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mRNA from alignment at E-siliculosus-1a_F_contig11315:130..1409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11315.872.1 ID=mRNA_E-siliculosus-1a_F_contig11315.872.1|Name=mRNA_E-siliculosus-1a_F_contig11315.872.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1280bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11315:130..1409- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGACGAGGAACTGTTGGTGGAAATTCTCGTCCAGGGATACGAAAA
CGCGGTGAAGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGCACCACCGCA
CGACGACACTCGACGACGACGTCCTCAACGCGGTCATGGAGGAACAGGAA
GCCTCTACCGCCATCCTCACCGCCAGGGCCAAAGTATACGCGCAGCAAGT
CGCCACCGCATCGGAAAATCTCCAGAAGGCGATCGCCGAGGCCCGCGAGC
AGGAGGCCATCGCGGACAAGGCGCGTGCCAACAGGCATGCCCGCGCCATG
GAGTACGTCGGTGCGTCCGCCATCTATGAGGGGTCCCAGCTTTATGACGA
GCCCAGCCGGGAGCAGTGCAAGAAGCGGGCCAGGCAGGAGCGGAAGACGA
TGCCCTTCAGCAACTTACGGCAGACCTCGGAGGATAACATCAATGAGTTG
ATTTGGCTCCAGAAGCAGTCGCACCTGGAGGAGGCCAGGAAAAACTTCGA
AGCAGAACAGAAGACCCTCCGCACGAAGAAGGCGGAGCGGGACCAGCTCG
CCCGCGAGCACGACAAGGCGGAGACAGCGGCATCAGCAGCGCTAAACGCG
CTCGGAGATCAAGTAAAGCAGGCAGAGGTGGATGCCTTCGACTCCCTGCT
CGAGTTCAAGCAGGCCTGCGCCGACACCCCCTGCAACGCGTCGCGGATGA
ACACCCTGTGGGCGGTGTGTGACGTCATCGACGAGCTGGTGGACGGGCCC
TCCCTGCAGGTGATTGTTCCTCGCGTGCTGGTGCTTGGCCTTCTGTGTGT
AGTCGCTACCTCTTGTCTTCCTACGCATTAACAACTATTCGTGTACATAG
ATAGATAGGCCTTTCTTGTCTTCATGGTCAAGTTTCGTTTCTTTACCCCT
GTAGAACCAACGTGACTCTTGTTTAAGATTGCGAGAACCATGCCATAGGA
AATAGTACAGCGCGTTTGGCAAGCCATGCGGTCTGCTACTCTTCGTCCCA
CACTTTGGTGCTGGTTGCTTTGGGTCGCCGCTGCAATAGAGTCAGTCGTG
TTCTTCTTGTGCATGCCGTGCCCCCTCATGCACTTCTCTCCAGCATCGCA
CCTTCGCTCATATCACCCAACGTGACGCTGAACTCGTTCGCTCTGTCATA
CATGTTACTATTCAATGTTATTTACCAGGCTGCTTCTCCTTGCCCGCCCC
CCCTCCCAACTGCTTTTGTGCTACTGCAGAGCAAGAGAGCGGGTCGCAGG
AGGACCAAGCGGACGAGGTCCTCCCGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11315:130..1409-

>mRNA_E-siliculosus-1a_F_contig11315.872.1 ID=mRNA_E-siliculosus-1a_F_contig11315.872.1|Name=mRNA_E-siliculosus-1a_F_contig11315.872.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11315:130..1409- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGACGAGGAACTGTTGGTGGAAATTCTCGTCCAGGGATACGAAAA
CGCGGTGAAGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGCACCACCGCA
CGACGACACTCGACGACGACGTCCTCAACGCGGTCATGGAGGAACAGGAA
GCCTCTACCGCCATCCTCACCGCCAGGGCCAAAGTATACGCGCAGCAAGT
CGCCACCGCATCGGAAAATCTCCAGAAGGCGATCGCCGAGGCCCGCGAGC
AGGAGGCCATCGCGGACAAGGCGCGTGCCAACAGGCATGCCCGCGCCATG
GAGTACGTCGGTGCGTCCGCCATCTATGAGGGGTCCCAGCTTTATGACGA
GCCCAGCCGGGAGCAGTGCAAGAAGCGGGCCAGGCAGGAGCGGAAGACGA
TGCCCTTCAGCAACTTACGGCAGACCTCGGAGGATAACATCAATGAGTTG
ATTTGGCTCCAGAAGCAGTCGCACCTGGAGGAGGCCAGGAAAAACTTCGA
AGCAGAACAGAAGACCCTCCGCACGAAGAAGGCGGAGCGGGACCAGCTCG
CCCGCGAGCACGACAAGGCGGAGACAGCGGCATCAGCAGCGCTAAACGCG
CTCGGAGATCAAGTAAAGCAGGCAGAGGTGGATGCCTTCGACTCCCTGCT
CGAGTTCAAGCAGGCCTGCGCCGACACCCCCTGCAACGCGTCGCGGATGA
ACACCCTGTGGGCGGTGTGTGACGTCATCGACGAGCTGGTGGACGGGCCC
TCCCTGCAGGTGATTCAGGCGGACGAGGAACTGTTGGTGGAAATTCTCGT
CCAGGGATACGAAAACGCGGTGAAGGACAGCCCGTGCCCTCAGGCGGAGC
AGCAGCACCACCGCACGACGACACTCGACGACGACGTCCTCAACGCGGTC
ATGGAGGAACAGGAAGCCTCTACCGCCATCCTCACCGCCAGGGCCAAAGT
ATACGCGCAGCAAGTCGCCACCGCATCGGAAAATCTCCAGAAGGCGATCG
CCGAGGCCCGCGAGCAGGAGGCCATCGCGGACAAGGCGCGTGCCAACAGG
CATGCCCGCGCCATGGAGTACGTCGGTGCGTCCGCCATCTATGAGGGGTC
CCAGCTTTATGACGAGCCCAGCCGGGAGCAGTGCAAGAAGCGGGCCAGGC
AGGAGCGGAAGACGATGCCCTTCAGCAACTTACGGCAGACCTCGGAGGAT
AACATCAATGAGTTGATTTGGCTCCAGAAGCAGTCGCACCTGGAGGAGGC
CAGGAAAAACTTCGAAGCAGAACAGAAGACCCTCCGCACGAAGAAGGCGG
AGCGGGACCAGCTCGCCCGCGAGCACGACAAGGCGGAGACAGCGGCATCA
GCAGCGCTAAACGCGCTCGGAGATCAAGTAAAGCAGGCAGAGGTGGATGC
CTTCGACTCCCTGCTCGAGTTCAAGCAGGCCTGCGCCGACACCCCCTGCA
ACGCGTCGCGGATGAACACCCTGTGGGCGGTGTGTGACGTCATCGACGAG
CTGGTGGACGGGCCCTCCCTGCAGGTGATTAGCAAGAGAGCGGGTCGCAG
GAGGACCAAGCGGACGAGGTCCTCCCGCTGAAGCAAGAGAGCGGGTCGCA
GGAGGACCAAGCGGACGAGGTCCTCCCGCTGA
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