mRNA_E-siliculosus-1a_F_contig1131.871.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1131.871.1
Unique NamemRNA_E-siliculosus-1a_F_contig1131.871.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D7FXF2_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF2_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 1.180e-111
Identity = 180/226 (79.65%), Postives = 186/226 (82.30%), Query Frame = 1
Query:  301 NLEERYQSTTPLQLAMXXXXXXXXXXXXXXXXXXXRRHHSGTTPLSVAASDGLLDVVELLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLG 978
            NLE+RYQS TPLQLAM                   RRHHSG T LS AASDG LD+VE+LLGANANPLLTTPNSLPGGPPLVALDAAARGGHA VVRRMIG LGIEGCGG           ATNQRMDVMAILVD GVVDNGYALVGAAACGAE SVKFLL+QHDKKKH SASSGAYVNSIC+ISG+SPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLG
Sbjct:    8 NLEKRYQSATPLQLAMGGGHLEVMRAMVKAGVNVDRRHHSGATALSAAASDGQLDIVEVLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAVVVRRMIGHLGIEGCGG-----------ATNQRMDVMAILVDVGVVDNGYALVGAAACGAEASVKFLLQQHDKKKHASASSGAYVNSICHISGSSPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLG 222          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 3.400e-58
Identity = 217/441 (49.21%), Postives = 278/441 (63.04%), Query Frame = 1
Query:   19 GPENGLHRAAKTRFTTREHLDALVASG-LDINGGDPNGFTPLMIAVVHGHSCVVTLLLDRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLEERYQSTTPLQLAMXXXXXXXXXXXXXXXXXXXR------RHHSGTTPLSVAASDGLLDVVELLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREK-EAQG-GEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRKP 1314
            GP N LH AA+    + E    ++ASG  DI+ G+  G+T LM+A   G++ +V ++L++GA     XXXXXXXXXXXXXXXXXXXXXXXXXXXX +E    +TT   L  XXXXXXXXXXXXXXXXXXX       R   G TPL  AA  G +D   LLL A A+PLLTT    P G   + LDAAA  GH  VV  +I Q+GI+GCGG++ GV AL QAA  + +++M IL +AGVVD G ALV AA  G ET +KFLL+Q   +K  +    AYVN+  +  G +PL +G+   + Y  R+VR+LV+AGADTTS V +R+ LG    V  TP  L  + VR+K +  G G A+ +QL +LEAI R+LL  EA  A+SWLWPS+I   T  AA  T     ++++   P+    L+ RRRA   +V LAAL RYS KP
Sbjct:   13 GPSNRLHAAAECG--SFEATATVLASGAFDIDQGNEYGWTALMLASRGGYARIVGMILNKGAQVSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVE----ATTTQHLCXXXXXXXXXXXXXXXXXXXXXXXNLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPD-PSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARK--TMDEAAYVNTR-DRGGVTPLLWGI---QHYRPRVVRLLVEAGADTTSPVAVRNQLGGDD-VSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPM----LVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.710e-48
Identity = 175/436 (40.14%), Postives = 229/436 (52.52%), Query Frame = 1
Query:   28 NGLHRAAKTRFTTREHLDALVASG-LDINGGDPNGFTPLMIAVVHGHSCVVTLLLDRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-NLEERY--QSTTPLQLAMXXXXXXXXXXXXXXXXXXXRRHHSGTTPLSVAASDGLLDVVELLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQ-LCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSL---IMRRRAIRHRVLLAALSRYSRK 1311
            N LHRA      + E   A++A G ++I+  +  G TPLM+AV +GHS +  +L+ +GA                                  +L+     + + PL  A    XXXXXXXXXXXXX    +   G+T L +AA +G + V+  LL  NANPLL    S PG    V LD AA+ GH  VVR +I +LGIEGC   + G  AL  AA+NQ +D+MAIL +AGVVD G AL  AA  G E SVKFLL+ H  K+      GAY+N+  +++G +PL          + RIVRMLVDAGADTTS V++ +  G  V  D TP A     +R+K    G+ A K+ L  LEAI R+LL  +A  A+SWLWPS          GA  I     +    PL  L L   I++RR  R   L+A L RYS K
Sbjct:  107 NQLHRAVLVG--SAELTQAVLAGGTVEIDQRNSYGATPLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTALHIAAEEGQVAVMRELLRGNANPLLIQ-TSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLR-HRHKEGGCGVEGAYLNAR-DVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFND-TPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPS----------GAPFIGRATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.930e-47
Identity = 183/438 (41.78%), Postives = 240/438 (54.79%), Query Frame = 1
Query:   19 GPENGLHRAAKT-RFTTREHLDALVASGLDINGGDPNGFTPLMIAVVHGHSCVVTLLLDRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLEE--RYQSTTPLQLAMXXXXXXXXXXXXXXXXXXXRRHHSGTTPLSVAASDGLLDVVELLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCE----LEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRK 1311
            GP N L  AA    F T  +L  L +   DI+ G+  G+TPLM+A   G+  +V +LL++GA      XXXXXXXXXXXXXXXXXXXXXXXXXX  L+   +    TPL  A                     R   G TPL  AA +G +  V LLL A A+PLLT  +   G    + LD AA+ GH  VV  +I Q+GI+GCGG++ G +AL QAA   R+D+MAIL DAGVVD G ALV AA  G E  +KFLL+Q   +K T  +  AY+N++  + G + L  G+   +    R+V++LV+AGADTTS V + +  G       TP  L    +      GG +A+    E    LE I R+LL  EA  A+SWLWPS+  P  +HA      +   TS+   P   + L++ RR    + LLAAL RYS K
Sbjct:   13 GPSNPLQAAADCGSFKTAANL--LASGAFDIDQGNEVGWTPLMMASRGGYPRIVRMLLNKGAQVWVTDXXXXXXXXXXXXXXXXXXXXXXXXXXALLDAATKQNHCTPLDCAAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDS-GKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGRKSTDRA--AYMNTLNGV-GLTSLLDGI---QRCRPRVVQLLVEAGADTTSPVLICNQPGEDDF-HITPLGLTMCLL------GGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDT-PTITHATAKGTGRTTATSTAATPF--IMLMIGRRTRGRKGLLAALLRYSSK 431          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 8.730e-46
Identity = 188/438 (42.92%), Postives = 243/438 (55.48%), Query Frame = 1
Query:   28 NGLHRAAKTRFTTREHLDALVASGLDINGGDPNGFTPLMIAVVHGHSCVVTLLLDRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLEERYQSTTPLQLAMXXXXXXXXXXXXXXXXXXX--RRHHSGTTPLSVAASDGLLDVVELLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLH---YGMGFGEFYS-ARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGK--PLAGLSL-IMRRRAIRHRVLLAALSRYSRKP 1314
            N LH AA  + +T    + L     DIN G  N +TPL+ A   GHS V+ +LL +GA               XXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXX    R    G TPL  A ++G L+    LL ANANPL+T        P L+ LD+AAR G+  V+R +I ++GIEGCGG + G  AL  A   +R+  MA+L  AGVVD G AL  +A  G E SVK+LL+ H   KH     GAYVN + + +G +PL    Y  G  E  S  R+ R+LV+AGADTT+ +R  +S+G  V+   TP  L    +++K+  G   ++++L  LE I R+LL  EA  A SWLWPS+    +          A+VT++T    P  G  L I+RRRA R  V+  AL R+ RKP
Sbjct:    2 NSLHDAA-FKGSTERTAELLATGSWDINQGTVNNWTPLIFAASMGHSSVLGILLSKGANVSIVTDTGVTALHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDIRTPVDGETPLFRAMTEGQLEATRELLRANANPLITRAPL----PTLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNH--AKHYGP--GAYVN-VRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGV-VLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSS----SGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.930e-36
Identity = 115/282 (40.78%), Postives = 152/282 (53.90%), Query Frame = 1
Query:  475 LLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAG-VVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGM--GFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRK 1311
            +LL A ANPLL +    P G   V L+ AA  G+  V R MI Q+GI GCGG + GV AL QAA  + ++ MA+L+DAG VVD G AL+ AA  G   +VKFLL++        A + AYVN   +  G +P+   +  G G   S +IVR+LVDAGA+TT  V +            TP A     +RE    G  A ++QL  L+    +L  AEA  A+SWLW S   P  + AAG T  +   T+    PL  +S ++RR+     VLL  L RYSRK
Sbjct:  163 VLLRAKANPLLCS--HTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQ------ADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTA-VATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 4.720e-36
Identity = 110/281 (39.15%), Postives = 157/281 (55.87%), Query Frame = 1
Query:  499 PLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNS---------ICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRKP 1314
            PLL   ++   G  ++ LDAA    HAAVVR++I QLGI+GCGGA+ G  A   A   Q+ D++ +L D G +D G  L+ AA  G+E  VK LL+Q  + KH    +  YVN          +C I  A  L  G       S R++R+ +DAGADT S VR+ +  G ++    TP A     +R+++A+G ++ + + C LEA+ R+LL  EA RA+SW W S+ +     A      +AK   +   PL GL+L  RR+A   RVL+ A+SRYSRKP
Sbjct:  333 PLLGRMDTYLRGRIILPLDAAVISKHAAVVRKLIQQLGIQGCGGASAGADASRWAVQTQQYDIVVMLADTGEIDTGRVLIDAAKFGSEALVKILLQQQ-RGKHMDWDT--YVNKKQPDGRTPVVCRIGRA--LRSG-------SPRVLRLFLDAGADTASTVRITNKEGVQLF-RGTPLAYTTWLLRDQQARGIDSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDALSSIERAVQDGRPRAKSRLTVDTPL-GLTLPRRRKARARRVLVMAMSRYSRKP 599          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.290e-35
Identity = 182/443 (41.08%), Postives = 224/443 (50.56%), Query Frame = 1
Query:    1 LQCSTVGPENGLHRAAKTRFTTREHLDALVASG-LDINGGDPNGFTPLMIAVVHGHSCVVTLLLDRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLEERYQSTTPLQLAMXXXXXXXXXXXXXXXXXXXRRHHSGTTPLSVAASDGLLDVVELLLGANAN-PLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAI----QAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRK 1311
            LQ    GP N LH+AA    + R   ++L+A G +DI+ GDP G+TPLM A   GHS V+ +LL+RGA          XXXXXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXX                                PLL  P  +  G   V LD AA  GH AV R ++ + GI GC GA+ GV AL QAA +Q +DVMA+L DAGVVD G ALV     G E ++KFLL+Q    K    +   Y ++  +  G +PL   +  G   S R+VR+LVDAGAD T  VR+    G       TP       + EK      A  +QL  L A  R+LL  E   A SWLW  +        AG  A     +A+  S+ GKPL     IM RR+ R    L  + R ++K
Sbjct:    4 LQRLARGPRNELHKAALDGSSQR--TESLLAGGRIDIDQGDPRGWTPLMFAAEEGHSNVIKVLLNRGASLLPVDDDDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLL--PTRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQ----KGEGTARTTYASTPRDGRGHTPLLSAVTTGPC-SPRVVRLLVDAGADATLAVRVPDGFGRSTKY--TPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGH--------AGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFRLAKK 427          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.290e-35
Identity = 184/435 (42.30%), Postives = 230/435 (52.87%), Query Frame = 1
Query:   19 GPENGLHRAAKTRFTTREHLDALVASG--LDINGGDPNGFTPLMIAVVHGHSCVVTLLLDRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLEERYQSTTPLQLAMXXXXXXXXXXXXXXXXXXXRRHHSGTTPLSVAASDGLLDVVELLLGA-NANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSLIMRRRAI-RHRVLLAALSRYSRK 1311
            GP N LH AA     + E   AL++S   +D+N GD  G TPLM+A  +GH  VV +LL+ GA             XXXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXX                             NA+PLL       GG   + LD A     +AVVR ++ +LGIE CGG + GV AL  A T + + ++A+L  AGVVD G AL  AAA G E SVKFLL+QH+ K   SAS  AYVN + N  G +PL   +  G   SARIVR+LVDAGADTT+  RL    G + +   T    +   + EK+A+G    E     L+A  R+LL  EAA A+SW+WP+      SH+      + +   +  +    L+L M RR     R LL A+SRYS K
Sbjct:   13 GPMNELHLAAMDG--SAERALALLSSRDPIDVNQGDSAGCTPLMLATTNGHPRVVRILLNHGANMSIMDDVGSDALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADPLLGNVLPSTGGVCFLPLDVAXXXXXSAVVRELLQRLGIERCGGESRGVDALCLAVTGRHVGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKH--SASRSAYVNKL-NRFGLTPLLENITCGHC-SARIVRLLVDAGADTTAAYRLTGKKG-QAMAATTHLTAMGCLLLEKKAKGDTGEEPH--NLQATFRLLLQVEAAHAISWVWPTG-----SHSVDRPPRRQRRAEAPVR----LTLPMTRRDTGTRRALLGAVSRYSEK 429          
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.210e-34
Identity = 112/277 (40.43%), Postives = 148/277 (53.43%), Query Frame = 1
Query:  487 ANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVRRMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVGAAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPL--HYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKEAQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATAIQAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRK 1311
            A ANPLLT  N      PL   D AA+ G   VV  ++ + GI GCGG T GV+AL  AA    MDVM  L  AGVVD G ALV A + G    VKFLL+Q +    T +   AYV+   +  G +PL  +  +G  +  S ++VR+LVDAGADTTS VR     G+  +V  TP +L    +R K A      ++ L  LE I R+LL  EA  A SWLW + +      A G  A + + +S+T   L  +  I+RRRA     + A+L RY+ K
Sbjct:  169 AKANPLLTRVNLAWQHLPL---DTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNG---TPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVV-CTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVK 438          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1131.871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF2_ECTSI1.180e-11179.65EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KJA9_9PHAE3.400e-5849.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI1.710e-4840.14EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KQV0_9PHAE2.930e-4741.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJF9_ECTSI8.730e-4642.92EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI2.930e-3640.78EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5KSA9_9PHAE4.720e-3639.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL76_ECTSI1.290e-3541.08EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FY91_ECTSI2.290e-3542.30EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7FVK3_ECTSI2.210e-3440.43EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1131contigE-siliculosus-1a_F_contig1131:35053..36992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1176
Model size1344
Exons2
Ec32 orthologEc-07_002980.1
Ec32 ortholog descriptionEsV-1-1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04031,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04015,ko04062,ko04068,ko04071,ko04072,ko04137,ko04138,ko04140,ko04150,ko04151,ko04210,ko04211,ko04213,ko04214,ko04218,ko04320,ko04360,ko04370,ko04371,ko04540,ko04550,ko04650,ko04660,ko04662,ko04664,ko04714,ko04720,ko04722,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04933,ko04960,ko05034,ko05160,ko05161,ko05165,ko05166,ko05167,ko05200,ko05203,ko05205,ko05206,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04015,map04062,map04068,map04071,map04072,map04137,map04138,map04140,map04150,map04151,map04210,map04211,map04213,map04214,map04218,map04320,map04360,map04370,map04371,map04540,map04550,map04650,map04660,map04662,map04664,map04714,map04720,map04722,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04933,map04960,map05034,map05160,map05161,map05165,map05166,map05167,map05200,map05203,map05205,map05206,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG koko:K07827
Seed eggNOG ortholog2880.D7FXF2
Seed ortholog evalue4.5e-94
Seed ortholog score351.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1131.871.1prot_E-siliculosus-1a_F_contig1131.871.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1131 35194..36965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927642.790293-UTR-E-siliculosus-1a_F_contig1131:35052..351931622927642.790293-UTR-E-siliculosus-1a_F_contig1131:35052..35193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1131 35053..35193 +
1696318621.5910673-UTR-E-siliculosus-1a_F_contig1131:35052..351931696318621.5910673-UTR-E-siliculosus-1a_F_contig1131:35052..35193Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1131 35053..35193 +
1622927642.8361962-UTR-E-siliculosus-1a_F_contig1131:36965..369921622927642.8361962-UTR-E-siliculosus-1a_F_contig1131:36965..36992Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1131 36966..36992 +
1696318621.6290307-UTR-E-siliculosus-1a_F_contig1131:36965..369921696318621.6290307-UTR-E-siliculosus-1a_F_contig1131:36965..36992Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1131 36966..36992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927642.806373-CDS-E-siliculosus-1a_F_contig1131:35193..363501622927642.806373-CDS-E-siliculosus-1a_F_contig1131:35193..36350Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1131 35194..36350 +
1696318621.610126-CDS-E-siliculosus-1a_F_contig1131:35193..363501696318621.610126-CDS-E-siliculosus-1a_F_contig1131:35193..36350Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1131 35194..36350 +
1622927642.8189228-CDS-E-siliculosus-1a_F_contig1131:36946..369651622927642.8189228-CDS-E-siliculosus-1a_F_contig1131:36946..36965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1131 36947..36965 +
1696318621.6202655-CDS-E-siliculosus-1a_F_contig1131:36946..369651696318621.6202655-CDS-E-siliculosus-1a_F_contig1131:36946..36965Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1131 36947..36965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1131.871.1

>prot_E-siliculosus-1a_F_contig1131.871.1 ID=prot_E-siliculosus-1a_F_contig1131.871.1|Name=mRNA_E-siliculosus-1a_F_contig1131.871.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=392bp
MIAVVHGHSCVVTLLLDRGADVSRKGGTGITALHISAASGNLAMTEMLMT
AGANLEERYQSTTPLQLAMGGGHLGVMRAMVKAGVNVDRRHHSGTTPLSV
AASDGLLDVVELLLGANANPLLTTPNSLPGGPPLVALDAAARGGHAAVVR
RMIGQLGIEGCGGATIGVSALYQAATNQRMDVMAILVDAGVVDNGYALVG
AAACGAETSVKFLLKQHDKKKHTSASSGAYVNSICNISGASPLHYGMGFG
EFYSARIVRMLVDAGADTTSRVRLRSSLGSKVIVDATPQALVASFVREKE
AQGGEAAEKQLCELEAIGRVLLSAEAARALSWLWPSNIIPYTSHAAGATA
IQAKVTSSTGKPLAGLSLIMRRRAIRHRVLLAALSRYSRKP*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1131:35053..36992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1131.871.1 ID=mRNA_E-siliculosus-1a_F_contig1131.871.1|Name=mRNA_E-siliculosus-1a_F_contig1131.871.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1940bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1131:35053..36992+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCAGTGTTCTACAGTAGGCCCCGAGAATGGTCTTCACAGGGCAGCGAA GACTAGGTTCACCACACGTGAGCATTTAGACGCCCTGGTTGCAAGCGGGC TCGACATCAATGGGGGCGATCCGAACGGCTTCACCCCTCTCATGATCGCC GTAGTACACGGTCACTCCTGCGTTGTCACACTTCTTCTAGACAGAGGTGC TGACGTTTCAAGAAAAGGTGGTACGGGCATCACTGCTCTTCATATTTCCG CTGCCTCCGGGAACCTGGCCATGACCGAGATGCTGATGACCGCAGGGGCC AATCTCGAAGAGAGATACCAAAGCACCACACCCCTCCAACTGGCTATGGG AGGAGGGCACTTGGGGGTGATGAGAGCGATGGTCAAAGCAGGCGTGAACG TCGACAGACGTCACCACAGCGGAACGACACCACTGTCCGTCGCAGCGTCG GACGGTCTGCTGGACGTTGTGGAGTTGCTCCTTGGTGCCAACGCGAACCC CTTGTTGACCACGCCCAATTCGTTGCCGGGAGGGCCTCCACTCGTCGCAC TGGATGCGGCAGCAAGAGGCGGACACGCTGCGGTGGTACGTCGGATGATC GGGCAGCTTGGGATCGAAGGTTGCGGCGGTGCCACCATCGGCGTGTCGGC CCTGTATCAGGCCGCCACGAACCAACGTATGGACGTCATGGCCATATTGG TGGACGCCGGAGTGGTTGACAATGGCTACGCTTTGGTCGGTGCCGCCGCA TGTGGTGCTGAAACATCCGTGAAGTTTCTCTTGAAACAACACGACAAGAA GAAGCACACCTCTGCTAGTAGCGGGGCTTACGTTAACAGCATCTGCAACA TTTCCGGCGCAAGTCCGTTGCATTACGGCATGGGTTTCGGCGAGTTTTAC TCTGCCAGGATCGTGCGAATGCTGGTTGACGCCGGAGCAGATACGACATC GAGAGTTAGACTCAGAAGTTCGCTTGGGTCCAAGGTGATTGTCGACGCCA CGCCCCAGGCGTTGGTCGCCAGCTTCGTCCGCGAGAAGGAAGCTCAAGGA GGCGAAGCCGCAGAGAAGCAGCTGTGCGAGCTTGAAGCGATCGGCCGCGT GCTGTTGAGTGCGGAGGCAGCCCGTGCTTTGTCTTGGCTGTGGCCGAGCA ACATCATCCCGTACACCAGCCACGCTGCAGGAGCTACGGCGATTCAGGCC AAGGTGACTTCGAGTACTGGAAAGCCGCTGGCCGGGTTGTCGCTGATTAT GAGGCGAAGGGCTATTAGACATCGGGTGCTCTTGGCGGCCCTTTCCAGGT GGGTGGTGAGCAGTATCCTTGGATCCTTGGCCCTTCATCACGCTCGCTGT ACGCATGTGTGGCGCATGCTGCATTCAACGATTCTTTGCGTATGGTGTTC GTTTTCTGTCAGTCAGATACATAGTCGGTGATATGTGGCTCTTCCTGTCG TGGGCGCCGTTGCTAAATATCTTCTCTCTGTGCTCATGTTCAACACCTGC TACCAAGAAATGCCTGCTCGTTGTCACCATGTGGTGTGAACACCCCACTG ACGTTGCGTCTTAGGCCTAAATCTGCATACGCTCTGTCTACCATTCGTGC GTTGAGCCGTTCGCCTTGCCTACCTGAGTTTGTTGTACAATTTTCTTGGT CGCACTCTCTTCCTGAGGTAGGATTCTGTTTGCAACATGGCATCGCAGCC GCAGCCCAAACTCGCCGCAGCCAAGGACATGTTCCCGGGGAATCACACGT TGTGTCCCCACGTTCGAGAAAGAGAGTCAGTCGACTTTTGTCGCGTCGGG AAGTCGATTAGGAAAACTAAAATGGCCGATCGCCGATCTCCAGATCGTTG ACGTTTAGCTCGCTGTCTCGCCATGCCCGCCAATTTTTTCGCAGGTATTC GCGGAAGCCTTAACCGGAGGTTTGGCGCAATCAAGCGGTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1131:35053..36992+

>mRNA_E-siliculosus-1a_F_contig1131.871.1 ID=mRNA_E-siliculosus-1a_F_contig1131.871.1|Name=mRNA_E-siliculosus-1a_F_contig1131.871.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1131:35053..36992+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGCCGTAGTACACGGTCACTCCTGCGTTGTCACACTTCTTCTAGA
CAGAGGTGCTGACGTTTCAAGAAAAGGTGGTACGGGCATCACTGCTCTTC
ATATTTCCGCTGCCTCCGGGAACCTGGCCATGACCGAGATGCTGATGACC
GCAGGGGCCAATCTCGAAGAGAGATACCAAAGCACCACACCCCTCCAACT
GGCTATGGGAGGAGGGCACTTGGGGGTGATGAGAGCGATGGTCAAAGCAG
GCGTGAACGTCGACAGACGTCACCACAGCGGAACGACACCACTGTCCGTC
GCAGCGTCGGACGGTCTGCTGGACGTTGTGGAGTTGCTCCTTGGTGCCAA
CGCGAACCCCTTGTTGACCACGCCCAATTCGTTGCCGGGAGGGCCTCCAC
TCGTCGCACTGGATGCGGCAGCAAGAGGCGGACACGCTGCGGTGGTACGT
CGGATGATCGGGCAGCTTGGGATCGAAGGTTGCGGCGGTGCCACCATCGG
CGTGTCGGCCCTGTATCAGGCCGCCACGAACCAACGTATGGACGTCATGG
CCATATTGGTGGACGCCGGAGTGGTTGACAATGGCTACGCTTTGGTCGGT
GCCGCCGCATGTGGTGCTGAAACATCCGTGAAGTTTCTCTTGAAACAACA
CGACAAGAAGAAGCACACCTCTGCTAGTAGCGGGGCTTACGTTAACAGCA
TCTGCAACATTTCCGGCGCAAGTCCGTTGCATTACGGCATGGGTTTCGGC
GAGTTTTACTCTGCCAGGATCGTGCGAATGCTGGTTGACGCCGGAGCAGA
TACGACATCGAGAGTTAGACTCAGAAGTTCGCTTGGGTCCAAGGTGATTG
TCGACGCCACGCCCCAGGCGTTGGTCGCCAGCTTCGTCCGCGAGAAGGAA
GCTCAAGGAGGCGAAGCCGCAGAGAAGCAGCTGTGCGAGCTTGAAGCGAT
CGGCCGCGTGCTGTTGAGTGCGGAGGCAGCCCGTGCTTTGTCTTGGCTGT
GGCCGAGCAACATCATCCCGTACACCAGCCACGCTGCAGGAGCTACGGCG
ATTCAGGCCAAGGTGACTTCGAGTACTGGAAAGCCGCTGGCCGGGTTGTC
GCTGATTATGAGGCGAAGGGCTATTAGACATCGGGTGCTCTTGGCGGCCC
TTTCCAGATGATCGCCGTAGTACACGGTCACTCCTGCGTTGTCACACTTC
TTCTAGACAGAGGTGCTGACGTTTCAAGAAAAGGTGGTACGGGCATCACT
GCTCTTCATATTTCCGCTGCCTCCGGGAACCTGGCCATGACCGAGATGCT
GATGACCGCAGGGGCCAATCTCGAAGAGAGATACCAAAGCACCACACCCC
TCCAACTGGCTATGGGAGGAGGGCACTTGGGGGTGATGAGAGCGATGGTC
AAAGCAGGCGTGAACGTCGACAGACGTCACCACAGCGGAACGACACCACT
GTCCGTCGCAGCGTCGGACGGTCTGCTGGACGTTGTGGAGTTGCTCCTTG
GTGCCAACGCGAACCCCTTGTTGACCACGCCCAATTCGTTGCCGGGAGGG
CCTCCACTCGTCGCACTGGATGCGGCAGCAAGAGGCGGACACGCTGCGGT
GGTACGTCGGATGATCGGGCAGCTTGGGATCGAAGGTTGCGGCGGTGCCA
CCATCGGCGTGTCGGCCCTGTATCAGGCCGCCACGAACCAACGTATGGAC
GTCATGGCCATATTGGTGGACGCCGGAGTGGTTGACAATGGCTACGCTTT
GGTCGGTGCCGCCGCATGTGGTGCTGAAACATCCGTGAAGTTTCTCTTGA
AACAACACGACAAGAAGAAGCACACCTCTGCTAGTAGCGGGGCTTACGTT
AACAGCATCTGCAACATTTCCGGCGCAAGTCCGTTGCATTACGGCATGGG
TTTCGGCGAGTTTTACTCTGCCAGGATCGTGCGAATGCTGGTTGACGCCG
GAGCAGATACGACATCGAGAGTTAGACTCAGAAGTTCGCTTGGGTCCAAG
GTGATTGTCGACGCCACGCCCCAGGCGTTGGTCGCCAGCTTCGTCCGCGA
GAAGGAAGCTCAAGGAGGCGAAGCCGCAGAGAAGCAGCTGTGCGAGCTTG
AAGCGATCGGCCGCGTGCTGTTGAGTGCGGAGGCAGCCCGTGCTTTGTCT
TGGCTGTGGCCGAGCAACATCATCCCGTACACCAGCCACGCTGCAGGAGC
TACGGCGATTCAGGCCAAGGTGACTTCGAGTACTGGAAAGCCGCTGGCCG
GGTTGTCGCTGATTATGAGGCGAAGGGCTATTAGACATCGGGTGCTCTTG
GCGGCCCTTTCCAGGTATTCGCGGAAGCCTTAAGTATTCGCGGAAGCCTT
AA
back to top