mRNA_E-siliculosus-1a_F_contig1131.869.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Match: D7FXF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF0_ECTSI) HSP 1 Score: 259 bits (663), Expect = 4.570e-82 Identity = 154/158 (97.47%), Postives = 155/158 (98.10%), Query Frame = 1
Query: 172 MSVADAAAIEVAAAAPVQASEGQEGDPVEPYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIREKXXXXXXEDRRQMALEEEAAKXXXXXXXXXGEVKQDSGAIELGDTRLSLPDSGGETALPEGSTA 645
MSVADA AIEVAAAAPVQA +GQEGDPVEPYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIREKXXXXXXEDRRQMALEEEAAKXXXXXXXXXGEVKQDSGAIELGDTRLSLPDS GETALPEGSTA
Sbjct: 1 MSVADAPAIEVAAAAPVQAIDGQEGDPVEPYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIREKXXXXXXEDRRQMALEEEAAKXXXXXXXXXGEVKQDSGAIELGDTRLSLPDSSGETALPEGSTA 158
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Match: A0A5A8E207_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E207_CAFRO) HSP 1 Score: 64.3 bits (155), Expect = 2.960e-8 Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 238 QEGDPVE--PYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALE 435
++GD E PY+WE GG+ +V + H+LHF G A+AG ++VG V+A+TLGL S+YQ+ ID E
Sbjct: 30 EDGDEEEEAPYYWEAGGDADVSTATALAHNLHFWGSLALAGVDSVGSVLASTLGLTQSRYQFEIDYAE 97
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Match: A0A7S2RVN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVN4_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.740e-6 Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 259 PYFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIR 450
PY+WE +V W K H + G + G E VGEVVA+ LGLN+S+YQ+VIDA E ++ R
Sbjct: 51 PYYWELVDVQDVPAWQKAWHISRWTGERVFRGMEFVGEVVADILGLNESRYQWVIDAAENEKAR 114
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Match: A0A7S2NT86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NT86_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 4.910e-6 Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 1
Query: 262 YFWEEGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADE 444
YFWE G N ++ W K+ H K V AEA GEVVANTLGLN S+Y YV D + +E
Sbjct: 82 YFWETGNN-DLSWKVKLWHRTVAVLGKGVKNAEAAGEVVANTLGLNGSRYDYVYDTMTPEE 141
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Match: A0A7S2CUC7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUC7_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 9.520e-6 Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 259 PYFWE-EGGNPNVDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEADEIREKXXXXXXEDRRQMALEE 504
PY+W+ G NP + K H + G K G E +G +VA+ G+N SKYQYVIDA++ DE RE+ +R +A EE
Sbjct: 43 PYYWQLVGYNPPLH--RKASHIAWWFGSKVFYGMEFIGAIVADLAGMNQSKYQYVIDAMKEDERREQRKKRIESERAMLAEEE 123
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Match: A0A7S2V0M7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0M7_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 1.160e-5 Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1
Query: 259 PYFWEEGGNPN--VDWWAKVRHSLHFGGVKAVAGAEAVGEVVANTLGLNDSKYQYVIDALEAD 441
PY+WEE + + + +V H+ ++ K V G E GE VA+ LGLN S+YQYVIDA+E D
Sbjct: 49 PYYWEEPSSTDNPLPLGRRVFHNFYWAAEKIVDGMEFAGECVAHMLGLNQSQYQYVIDAMEID 111 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1131.869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1131.869.1 >prot_E-siliculosus-1a_F_contig1131.869.1 ID=prot_E-siliculosus-1a_F_contig1131.869.1|Name=mRNA_E-siliculosus-1a_F_contig1131.869.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=159bp MSVADAAAIEVAAAAPVQASEGQEGDPVEPYFWEEGGNPNVDWWAKVRHSback to top mRNA from alignment at E-siliculosus-1a_F_contig1131:22596..27269- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1131.869.1 ID=mRNA_E-siliculosus-1a_F_contig1131.869.1|Name=mRNA_E-siliculosus-1a_F_contig1131.869.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1131:22596..27269- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1131:22596..27269- >mRNA_E-siliculosus-1a_F_contig1131.869.1 ID=mRNA_E-siliculosus-1a_F_contig1131.869.1|Name=mRNA_E-siliculosus-1a_F_contig1131.869.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=954bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1131:22596..27269- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |