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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1131.868.1 vs. uniprot
Match: D7FXE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE8_ECTSI) HSP 1 Score: 286 bits (733), Expect = 2.430e-91 Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 2
Query: 83 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSKSGEGAACGGVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLYTHSRAPNSSMFNSAPVWVSMAGLVAVVAGLVLHQLEPGLLTEDKASTTKARNARTKKNA 544
MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSK+GEGAAC GVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLY HSRAPNSSMFNSAPVWVS+AGLVAVVAGLVLHQLEPGLLTEDKASTTKAR A TKKNA
Sbjct: 1 MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSKAGEGAACSGVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLYAHSRAPNSSMFNSAPVWVSVAGLVAVVAGLVLHQLEPGLLTEDKASTTKARTAGTKKNA 154
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 465 |
| Model size | 1746 |
| Exons | 5 |
| Ec32 ortholog | Ec-07_002940.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1131.868.1 >prot_E-siliculosus-1a_F_contig1131.868.1 ID=prot_E-siliculosus-1a_F_contig1131.868.1|Name=mRNA_E-siliculosus-1a_F_contig1131.868.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=155bp
MVGALKVVLPVLGVAQIVLASLYADPGFQKMIVKLLLGENSKSGEGAACG
GVILQQLCPLYLGMAALNIWSWGMGSEIRPKVALANIFSMAGVLYTHSRA
PNSSMFNSAPVWVSMAGLVAVVAGLVLHQLEPGLLTEDKASTTKARNART
KKNA* back to topmRNA from alignment at E-siliculosus-1a_F_contig1131:11963..17113+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1131.868.1 ID=mRNA_E-siliculosus-1a_F_contig1131.868.1|Name=mRNA_E-siliculosus-1a_F_contig1131.868.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5151bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1131:11963..17113+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCAATCCCTACTTGAAGATCGTAGGAGAGGCGGGACTTTCCGAGGACTTG
TGTTTGCACAGGTGAGTGCCGCTGAGTTTGTGGCAATGGCTGTGCTCCCT
TCCTCTCGGTGATGCCACACACTCACCCGCACGAGAGTTATCAAAAGGAC
ACACACACACACACCCTTTTTGCGCACGGATCTTCTCGGCGAGCCGATCG
ATGAATCTACAGCAGATAGAGATGCTGCTGCGTCGTTTACCAGCGCTGCT
GTAGATACCGTATATGACACAAGATAACACACCCCCTGGACCAATTTTCA
AAGCTCGATTACGTCGCGACGAAGAGGATGCATAAATGAAACAATGCATT
TTCGGAAAGCTCTCGACGACACAGCTGAACGTCACCGTTTTCGACGCTGT
GGCTCTTTCTGCTTCTGAGAAATCGATATTTGAAAATCGGTCCAGGGGGT
GTGTTATCTTGTGTCATTTACGGTACACGTGTTTACCTCCACAGTGAACC
GCAAGCTGTCTAATAGTGGGCTGTTCCCACCGTTGTAAGTGCCGGTAGGC
TTGTTCAAAGCTGCTGTTTTTTGTTTGGTGTTTGGGGGTGCTCTCCGCGA
GTGCGAGTTTTCTGGAATCCCCCCGCACCGGTTGGGTCCCATGGCGGCAT
GGCGGCACCTGGCAGCAGCACGTATGTACAGTATGTATGCGCAAGTGCTG
CTGTAAGTTTTTTTGCTTGTGTGCCGTCCGTCTTCACTCTGTGGGAATCG
CTAGGTAGCCTTTGCCAGTGAATCCGTCACGTGTCGTACTTTCTTCTAGA
TCCAGTGTGGAATCATGTACTTGAAGTGTTCTCAGCTGGGATCTGCGTGT
ATGGTTTTACATACAGCAGCAGTTTACAGGTGAAGTACACTTGCTGCCGA
TACGTCTTGCTTGGTTCGCTGTTCGTGATTTTACGGTAGACTGCGGGAAG
TGCACCACGATGTGAGGTCGCACGGTTAGCAGTCTAGTCTAGACTGCAAA
CTTTTTGTTTTTAAACCTGGTAAACATCGACTCCATGAGGAGAGCAATCG
TCCTGTCGAATGGAGCGGTCTCCTCCGAGAAGGACAGAAGGAAAGCAGCG
GAGAGAGACAGAGAGACAGCGACAGGCAGAGGCGGGGTGCCATCACGTAC
TTTTCACAGTTCACGTGGGTGGCACTCCTCATGTTCGCAAGTTTTGAGCC
TTCACGACCTGCTCGGCGGCTACCTTACTAGACTCCATGCAGACCAGACT
AAACCTTGATGCGGTTTCCTGGTGCGACGTTGCCGCGATGGATGCAATAT
TCCCGGAGAGCGCAGCGCTACGAGGGGTGGTTGAATATTGAGTTATACGT
TTCGTGCGTGTAGGTGCTAGTGCCGATTCCCAAGATATACGCATACCCAC
ATGTCCAAGAACCCCAAGGGATGGTGTTTGAACTGTAGCCACCACCTTGT
ATCCAATTCTGTCCGCGTCTTGGTGCTGCTGATGATCCTTCGCTCTGATT
CACCGAATGCAGAGAAGGTGTAGCAACGTCAGGATGGTGGGAGCGCTGAA
GGTCGTGCTGCCTGTGCTCGGGGTAGCGCAGATTGTGCTAGCCTCGCTTT
ACGCTGACCCTGGCTTTCAGAAGATGGTGAGCAGCAGCGCGATAACGTCT
TGGGCTTCACCAGAACAACGGATTCGTACGCATCGCTAGAGAGATGTCAC
CCAGTTATGACACCCGCATGAAGAAACTATTTTGGTTGATGCCACTCCCC
CACTCGCTATACACAGCAGTGCCAAACACCACCCTGACATGTGTCGTTTG
TGCGGTTTATCACCCCTTTTAAGCGGTCGCGACCTTGGCCGAACGATGTA
CCTCGTAGAAAATGCCATTTGACTGTAAAGTATTGCATCGACGCTTGACA
AGCTGCTGTGGATGTTTCCCCCTGCGAAATTAGCATTTTCTACGATGTCC
CCTGGGTTTCATCCATGCGCAACGGCACTGCCGTTATTTTGTTTCGAATT
GCAAATCGGCGTCACAATCATACGAAACTGCGGTACTCCCTTACACACGA
TGTGTTCTTCGTATATGATTCATTCGATATTTCCAGCTTCTGCTTCCACG
CGTTTTGTAGTTTTTGTCCGCCTCATGCGCTTCGCTACTCAGTGTCTATG
CTGACGGAAGCTTACGTTGTAACTGCTTACCTCAGCGTTCGGAGGACTAT
AGGTGCAGCCGCTCATTTGTGACTTGTTCTGTTTCCAACGCGTTCACCAC
ACAAATACCTTTCCTTTCCCTTCTTATCTGTGCAGATTGTCAAGCTATTG
CTTGGAGAAAACTCGAAGTCGGGCGAAGGTGCCGCTTGCGGTGGCGTGAT
CCTACAGCAACTTTGCCCTCTGTACCTGGGAATGGCGGCTTTGAACATCT
GGAGTTGGGGAATGGGGAGCGAAATAAGGCCTAAGGTAAAAAAACATCAA
AGGCCAATCGACGTAGGCAAATCGCAAACGTGCGTGCACGCGCGCACCCT
ACAGCATTGCCCACCTCGTGCTAGCCCATCCGCGCCCTTGCCCTTCACCG
TAAAAGCTACCGCATCTGCAATCATGATTTTCTTCCAGAAGGCAGACACC
TAAATGGGTGCGCCTCGGATCCTGCCAGCCTCGCAGAGTTAGTTCCTTGA
GTAGCCCGCAAAGGGGCGTTTTTGGATGTATGTAGACTAACTTCTGATCA
TCAAATACATTCGCCTCATTCATGCCTACCCATGCATCTCACCGTTATTT
CGCGGCATCAAGGCAACACTCACTCCTGAGCAGCTGATCCATAGGCTCGC
TTGAAGGTGAATTCCCAACTTTCACGAGAGAAGAATTAGCAAGCCAAAGC
TAACTTCACAAGGAAGTAGCGAATGTCGAAACCAGGGGAAGAGTAAGCAA
GCGGACAATCGCACTCGCTTCACAAGGAAGTAGCGAAAATGCCGAAACCA
GGGGAAGAGTAAGCAAGCGAACAATCGAAGACACACCGGGCAAGAAGCTG
ACCGAGGACTGATGAGTATCAAGCTAAAGGCTGTCCGTTCACTTAAAGAT
CGGGCCGCAACGGAATTGAACACGCTTGGGAGAATGTGTACCACCCAACA
ACGAAATGAACAATTGCAACATGTCGACAATTCCACAATAGCTTTTGCCA
ACCAAACACTCTCTGGACTGCGCTATACCCTTCGCTATCAGGTGGCGTTG
GCCAACATATTTTCGATGGCAGGAGTGCTGTACACGCACTCCCGTGCTCC
CAATTCGTCCATGTTCAACTCTGCGCCGGTGTGGGTGAGCATGGCTGGCC
TTGTCGCCGTGGTGGCCGGCCTCGTCCTTCATCAGGTATGCGGCCCTCCG
CTTTATTTTCCGGGGTGCAGCACCTTTTAAAGTATCTGTTCACCCCACCT
CACTGAGTTGTATTCATCGTTCGGAGGGTGTGTGTCTTTCTTTAGCAAGA
GCTGTTGTCGAGGCGTCGCATGGTCCGGAGGGCTTCTGTTCGAACCAAGC
AATCGATGTTGTTATGTATCTCGAGCAAGAGCTCGTGTCGAAGGGTCGCA
TGGTCCGGAGGGCTTCTGTTCGAACCAAGCAATCGATGTTGTTATACGAT
ATCACGACCTGCATTGCAATCTTCTCTCCGACTTGCCGTGAGCCCCGTGA
ACCGAAAATTATGGCTCGTCTCATCGAATTATAGCGCGTGAAAAACGTCA
CCGCGCGTTCAGTCTCGATAGACACAATTCGGGGCTGTTACGCTAAGGAT
TATGCGAGAGGCGTAGAATCAGAGTGCTGACGAATGACACAATTTCGCGT
TCTCCGCCCCAACGTCACTGCCTCTCTCGTTTGCTTGTTAACGGGCAATC
GACTGTTGCTCCCTATGTGTGTAGCTTGAACCGGGCCTACTGACCGAAGA
CAAGGCCTCCACCACTAAGGCAAGAAATGCCAGGACCAAGAAGAACGCCT
AAATATTCGCAAAAAACTACTTTTCCGGCCGGGGCCAACGCCGGATCTAC
AAAAAATGTTCGTTTTCAAGACGTGTGTTGGATGATTGTGTGATCGCGGT
GTTGACCCCGCGGTGAGATTGTCTACCAGGTACGTGACGTGCCAATTTTG
CCCCGTGGGCGCGGAGAGCAATGTTGCACATATTATTTCGTTCTCGATTT
TCGACCCGGTCGGGCCAGTTCGAGGTTGCTTTTTTTTCGGAACATTTGAT
ATGGGTGTCCTGGAAGGGACGGGTTCTGCAGACGGGACACTTCAGAGGAT
ATATTGCCGCATGACGAGTAGCTCAGGGATATTGGTATGTCACTCGGGCA
AGGCTACTGAGTTGCCCGCCTGTTCATAGAGGAGGAAATCGGTGTGGCGG
ATCTGTATTTTCCTGTTTAACAGCAAGGCAGAAAGCTTTGAAGACATCCT
CGTTTGTTCATGTTGTGCGGGGTGCATCTCGGGTCACTGATTGTGATGTC
ATCAATTTCATTCGCCGGCCAGGCGTTGATACGGTGGACAGCTCTCTTGT
GCCCCCTAGAATGTAGACTGAATCCGTTCCGTGCTAGACTTGCAAGAGTA
TTGCGATTCATGGATATCCGTGACGTAGGCCGGTCCTGGTTGGTTCGCTG
TGTTGTAAGTATCATGTCTTGTGGTTTCTATTTTATGCGTTTGCTTGGCT
GCATCACAGACTCATGGTTCTGGGGCAGGTTGATAAATATGTCCGATCTC
CACTCCAATCTCACCACGTGGTGATAGTTTTCTGTCGATTGCGTGTTCTT
GTAGAATGTTTTTTTCGATATTTTTCGGTGATAAAAACCTTTTTGGAATC
GGAGTCGGTACCAACTTCGCCGAGTTGAGAACCGATTCGAACACAGACTC
CGTACGACCGAATTGTCTTTGAGCTTGTGAATGCGTCATATCTCTGGGGT
TTTTCGTATGCATTTGAACGGGTCCTAGACCCACAAAAACTGAACCTCGA
CGCGGAACGTGACGAGTCTCGTCTTGGACGACGATGTTTGATGGATGATC
AACGTGGAGCTCTGCTATCCGATGCAGGTCCCCAGTTGAGATTATCCGTT
GGGGTTCGCTACCAAGGCTCAGTTCCGTACAGACGGATCCTGTGGCAATG
TTGGCTCCTTACGAAGACGACGTGGTCAAGGGTCCGAAGTTGTGATTCCG
G back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1131:11963..17113+ >mRNA_E-siliculosus-1a_F_contig1131.868.1 ID=mRNA_E-siliculosus-1a_F_contig1131.868.1|Name=mRNA_E-siliculosus-1a_F_contig1131.868.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=930bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1131:11963..17113+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGGAGCGCTGAAGGTCGTGCTGCCTGTGCTCGGGGTAGCGCAGAT
TGTGCTAGCCTCGCTTTACGCTGACCCTGGCTTTCAGAAGATGATGGTGG
GAGCGCTGAAGGTCGTGCTGCCTGTGCTCGGGGTAGCGCAGATTGTGCTA
GCCTCGCTTTACGCTGACCCTGGCTTTCAGAAGATGATTGTCAAGCTATT
GCTTGGAGAAAACTCGAAGTCGGGCGAAGGTGCCGCTTGCGGTGGCGTGA
TCCTACAGCAACTTTGCCCTCTGTACCTGGGAATGGCGGCTTTGAACATC
TGGAGTTGGGGAATGGGGAGCGAAATAAGGCCTAAGATTGTCAAGCTATT
GCTTGGAGAAAACTCGAAGTCGGGCGAAGGTGCCGCTTGCGGTGGCGTGA
TCCTACAGCAACTTTGCCCTCTGTACCTGGGAATGGCGGCTTTGAACATC
TGGAGTTGGGGAATGGGGAGCGAAATAAGGCCTAAGGTGGCGTTGGCCAA
CATATTTTCGATGGCAGGAGTGCTGTACACGCACTCCCGTGCTCCCAATT
CGTCCATGTTCAACTCTGCGCCGGTGTGGGTGAGCATGGCTGGCCTTGTC
GCCGTGGTGGCCGGCCTCGTCCTTCATCAGGTGGCGTTGGCCAACATATT
TTCGATGGCAGGAGTGCTGTACACGCACTCCCGTGCTCCCAATTCGTCCA
TGTTCAACTCTGCGCCGGTGTGGGTGAGCATGGCTGGCCTTGTCGCCGTG
GTGGCCGGCCTCGTCCTTCATCAGCTTGAACCGGGCCTACTGACCGAAGA
CAAGGCCTCCACCACTAAGGCAAGAAATGCCAGGACCAAGAAGAACGCCT
AACTTGAACCGGGCCTACTGACCGAAGACAAGGCCTCCACCACTAAGGCA
AGAAATGCCAGGACCAAGAAGAACGCCTAA back to top
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