mRNA_E-siliculosus-1a_F_contig1130.861.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1130.861.1
Unique NamemRNA_E-siliculosus-1a_F_contig1130.861.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: D7FNT6_ECTSI (Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT6_ECTSI)

HSP 1 Score: 491 bits (1264), Expect = 9.590e-174
Identity = 249/290 (85.86%), Postives = 262/290 (90.34%), Query Frame = 1
Query:   31 PGKKKQKKNMPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 900
            P  +++KKNMPLG  NG GG+SPEELFRSIPPVSKVLIVGMVGT+ S+VLGVCSPY+YALSWPLVWNKFHLWRLFTSG+FPG P Y  LM M S+GMFS+RYEKDGFSMGGGGGSADYAYMLLFGFV IE SLLLLFYQPFMIFT AIMFYICYVWSRKNPGMSVSFWGI+INALYVPWVM+A+RVVLG SIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWG EGSGVTMQAGG           AGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS
Sbjct:   10 PPHRQKKKNMPLGVFNGSGGSSPEELFRSIPPVSKVLIVGMVGTILSVVLGVCSPYQYALSWPLVWNKFHLWRLFTSGMFPGTPSYETLMLMISMGMFSIRYEKDGFSMGGGGGSADYAYMLLFGFVGIETSLLLLFYQPFMIFTTAIMFYICYVWSRKNPGMSVSFWGIIINALYVPWVMVALRVVLGHSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGHEGSGVTMQAGGXXXXXXXXXXXAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 299          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A6H5KW67_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW67_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 2.070e-121
Identity = 183/190 (96.32%), Postives = 187/190 (98.42%), Query Frame = 1
Query:  331 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 900
            RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGI INALYVPWVMIAMRV +G+SIFMALLGIAVGHLFYFLVDVLPDLH+IDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAG+PAPG VRPPRDIPRTGGGSGWGTGRTLGSS
Sbjct:   10 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGIHINALYVPWVMIAMRVAIGASIFMALLGIAVGHLFYFLVDVLPDLHEIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGVPAPGVVRPPRDIPRTGGGSGWGTGRTLGSS 199          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A835YYA5_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA5_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.130e-75
Identity = 130/273 (47.62%), Postives = 169/273 (61.90%), Query Frame = 1
Query:   82 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTG-RTLGS 897
            G   SPEE F+S+PPVSKVLI  +VG+   ++LGV   Y  AL W  + +KF +WRL+T+ +F G P +  LM++   G +S+RYEKD F  GGGGGSADYA+ML FG   +    L  F  PF+  +  +MF I YVWSRK P +  SFWGI + ++YVPWVM+A  ++ G+S F  LLGI VGHL+YFLVDV+PD    D+L TP FL ++ G+G   +GV                    PAPG   PPR  PR GGG  WG+G R LG+
Sbjct:   11 GAAGSPEEWFKSLPPVSKVLITSLVGSTVLVMLGVIDAYNLALLWSPLRHKFEIWRLYTNAVFLGAPSFPFLMNLMIFGQYSIRYEKDAFDTGGGGGSADYAWMLAFGMAVLSGLSLAFFVVPFL--SIPLMFMIIYVWSRKVPDVPTSFWGITVQSVYVPWVMVAFNLLTGASAFNPLLGIGVGHLYYFLVDVVPDQFGKDVLTTPAFLTDLFGYGGLNTGVQR-----------------FPAPGHAAPPRGFPRPGGGHTWGSGGRPLGT 264          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A6H5KUK6_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK6_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 8.450e-57
Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 1
Query:   58 MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRY----EKDGFSMG 360
            MPLGFVNGG GNSPEELFRSIPPVSKVLI+GMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPG+PGYGALMS+FSIGMFS+R+    EK  F  G
Sbjct:    1 MPLGFVNGGSGNSPEELFRSIPPVSKVLILGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGKPGYGALMSIFSIGMFSIRWSGHQEKSFFGAG 105          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A7S2XX42_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX42_9STRA)

HSP 1 Score: 179 bits (453), Expect = 2.920e-51
Identity = 102/275 (37.09%), Postives = 165/275 (60.00%), Query Frame = 1
Query:   82 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDG-FSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSF-WGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 900
            G G SP++ + S+P ++KV +   +    ++  G+       L++PL+W KF  WRL T+    G+ G+G L++ + +  +S +YE  G F+ GGGGG +DYA+M++FG V +      +   PFM   + ++F++ YVWSR+ P ++VSF +G+ I ++Y PW  +A +++LG+S FMALLGIAVGHL+YFL +++PD +D ++L+TP F+++  G+G      T  A    A  G+  G  G PA  +   P       GG  WG G  LG++
Sbjct:    8 GQGGSPQDWYNSVPFITKVWLTSTLAVTLAVNFGILPAGHLFLNFPLIWKKFQFWRLLTNFTCMGKLGFGTLITFYMLYSYSEKYETGGCFNTGGGGGVSDYAFMMMFGMVVMNIIGYFM-NTPFM--AQPLVFFVMYVWSRRFPDLTVSFMFGVKIQSIYAPWAYVAFQILLGNSPFMALLGIAVGHLYYFLAEIVPDQYDFEILKTPVFMIHYFGYGAYHPVNTAPA----AQRGSVNGTGGQPANSSFPMP-------GGRQWGQGHVLGTN 268          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A7S0SWB6_9STRA (Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWB6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.430e-47
Identity = 79/214 (36.92%), Postives = 137/214 (64.02%), Query Frame = 1
Query:   82 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNML 723
            G G+S ++ + +IP V+KVLI   V     +   +  P +  L W  +W+KFH+WRLFT  +F G   +  LM    +   S++YE + ++ GGGG SADY Y++++  V +   L++ +Y  FMI ++ +M+ I YVWSR+     V+ +G     LY+PW+ I + +++G+SI   L+GIAVGH +YFL++V+P ++++DL++TP+F ++++
Sbjct:    9 GQGDSIQDWYNNIPFVTKVLITSTVVIGGLLTFQLIPPQDLILDWRFIWHKFHIWRLFTPFVFAGSFSFNFLMHTVVLYQNSLKYENNPYNTGGGGSSADYLYLIIYSIVLL---LVIAYYMNFMILSDPLMYVIVYVWSRRESESVVNMYGFKFKGLYLPWIYIGISMLMGNSIVPPLIGIAVGHSYYFLIEVMPTIYNVDLIRTPKFCIDII 219          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A482RVM1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVM1_9ARCH)

HSP 1 Score: 156 bits (394), Expect = 8.990e-43
Identity = 80/212 (37.74%), Postives = 126/212 (59.43%), Query Frame = 1
Query:   88 GNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNML 723
            G++ +  F S+P ++KV +V  + T   +   +       L WP V NKFH WRLFT  +F G   +   +    +     RYE + F+ G GG SAD+ ++LL   + +   L+L +     + +E +++ I YVWSR+ P   ++ WG    ALY+PWV IA+R+V+G +I   L+G+AVGHL+YFLV VLP  H +DL++TP+F V+++
Sbjct:    5 GDTLQGWFSSVPLITKVFLVSTLITGAGLSFKMLDGGSLVLLWPYVQNKFHFWRLFTCFVFAGPFSFNFALHTLVLYENCKRYESNPFNTGAGGNSADFLWLLL---IAMTVLLVLAYIFDMYVLSEPLLYVIMYVWSRREPDAMLNIWGFRFKALYLPWVYIAIRMVMGGAITEPLIGVAVGHLYYFLVQVLPATHGVDLIKTPKFCVDIV 213          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A8J2WZQ4_9STRA (Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZQ4_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.020e-43
Identity = 81/224 (36.16%), Postives = 132/224 (58.93%), Query Frame = 1
Query:   64 LGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFM---IFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLG 726
            LG V  G  N  ++   S+PPV++V  V   GT   I  G+  PY    SWP V ++F +WRL T   F G   +  L++++ +  +S  YE   ++ GGGG +ADY +M+  G      +L+L     FM      +A+++ + YVWSR+NP   VS +G  + A+ +PW + A  +V+G+S+ + L+GI VGHL+YF ++VLPD + +D+++TP+ L++  G
Sbjct:    7 LGRVGQGPANPVKDWLESLPPVTRVWFVASFGTTCLISFGLVDPYRLLWSWPAVRHRFEVWRLITPYFFFGGFSFPFLINLYLLQQYSKGYEISPYNTGGGGDTADYIWMMFLG------ALMLCGVSEFMGQVAPAQAMLYLVLYVWSRRNPTQQVSLYGFPVQAIMLPWALCAFNMVIGNSLLLPLMGIGVGHLYYFAIEVLPDAYGVDIVKTPRALIDACG 224          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A7S2SNX6_9STRA (Derlin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX6_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.170e-42
Identity = 81/224 (36.16%), Postives = 133/224 (59.38%), Query Frame = 1
Query:   58 MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQ-PFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLG 726
            M  G    G GN+P+E F S+PP+++ L+V ++ T  +   G+ SP++  L W  VW  F +WRL ++ +F G   +  L++++ +  ++ RYE   F+ G GG SAD+A+ML  G  C   ++   F+  PFM   + + F I YVW+RKNP    S +     A Y+PW M+A  +++G+ I++ L+GIA GH++YFL    P     D+++TP F++ +LG
Sbjct:    1 MMRGMGRVGDGNTPQEWFYSLPPITRSLLVAVLATTAACSFGIVSPFQLHLDWTRVWRGFEIWRLASNFVFFGTFSFPFLINLYLLVQYASRYEVSPFNTGAGGSSADFAWMLTIG--CSLLAIASYFFGLPFM--GQPMSFMIMYVWTRKNPDEMTSIFFFKFQAFYLPWAMLAFNLLIGNDIYLPLMGIAAGHVYYFLHYTAPAELGRDIIKTPTFMIELLG 220          
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A1Z5KIS9_FISSO (Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIS9_FISSO)

HSP 1 Score: 151 bits (381), Expect = 1.650e-40
Identity = 77/222 (34.68%), Postives = 132/222 (59.46%), Query Frame = 1
Query:   76 NGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDG-FSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFM--IFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWG 732
            N G    P++ F+S+P V++  +   +    +   G+ SP +   SWP++ + F LWRL T   F G   +  L++MF +   S +YEK G ++ G GGG+ADY +ML+FG V +  +  L+     M  +F   ++F++ Y WS+++P    + WG+ + A Y+P+  +A+ + +G+ +   + G+ VGHL+YFL +V+P +H  D+L TPQFL++ LG G
Sbjct:    8 NVGEAAGPDQWFQSLPIVTQYWLGAAMVVTLAGNFGIISPMQLIFSWPMIKDNFELWRLLTPFCFVGAFSFNTLITMFMLVNMSQQYEKGGPYNTGAGGGTADYVFMLMFGAVVLLLTYPLMAAYAAMAPLFARNLVFFVLYTWSKRHPTSQANIWGVPVPAAYLPFAYVALTIFMGNPVMDLVHGMIVGHLYYFLAEVVPRVHGKDILVTPQFLIDRLGVG 229          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT6_ECTSI9.590e-17485.86Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5KW67_9PHAE2.070e-12196.32Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A835YYA5_9STRA1.130e-7547.62Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A6H5KUK6_9PHAE8.450e-5786.67Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
A0A7S2XX42_9STRA2.920e-5137.09Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
A0A7S0SWB6_9STRA3.430e-4736.92Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 Rep... [more]
A0A482RVM1_9ARCH8.990e-4337.74Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A8J2WZQ4_9STRA9.020e-4336.16Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
A0A7S2SNX6_9STRA1.170e-4236.16Derlin n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
A0A1Z5KIS9_FISSO1.650e-4034.68Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1130contigE-siliculosus-1a_F_contig1130:922..3436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size903
Model size903
Exons3
Ec32 orthologEc-12_003430.1
Ec32 ortholog descriptionDerlin
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.I
EggNOG OGsCOG5291@1,KOG0858@2759
EggNOG free text desc.ubiquitin-dependent ERAD pathway
KEGG ModuleM00403
KEGG Pathwayko04141,map04141
KEGG koko:K13989
Preferred nameDER1
Seed eggNOG ortholog2880.D7FNT6
Seed ortholog evalue1.9e-137
Seed ortholog score495.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1130.861.1prot_E-siliculosus-1a_F_contig1130.861.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1130 922..3436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927638.139674-CDS-E-siliculosus-1a_F_contig1130:921..12531622927638.139674-CDS-E-siliculosus-1a_F_contig1130:921..1253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 922..1253 +
1696318620.860603-CDS-E-siliculosus-1a_F_contig1130:921..12531696318620.860603-CDS-E-siliculosus-1a_F_contig1130:921..1253Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 922..1253 +
1622927638.1552792-CDS-E-siliculosus-1a_F_contig1130:2240..24921622927638.1552792-CDS-E-siliculosus-1a_F_contig1130:2240..2492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 2241..2492 +
1696318620.8800414-CDS-E-siliculosus-1a_F_contig1130:2240..24921696318620.8800414-CDS-E-siliculosus-1a_F_contig1130:2240..2492Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 2241..2492 +
1622927638.170019-CDS-E-siliculosus-1a_F_contig1130:3117..34361622927638.170019-CDS-E-siliculosus-1a_F_contig1130:3117..3436Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 3118..3436 +
1696318620.8913898-CDS-E-siliculosus-1a_F_contig1130:3117..34361696318620.8913898-CDS-E-siliculosus-1a_F_contig1130:3117..3436Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 3118..3436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1130.861.1

>prot_E-siliculosus-1a_F_contig1130.861.1 ID=prot_E-siliculosus-1a_F_contig1130.861.1|Name=mRNA_E-siliculosus-1a_F_contig1130.861.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=301bp
RASPPGATTTPGKKKQKKNMPLGFVNGGGGNSPEELFRSIPPVSKVLIVG
MVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALM
SMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQP
FMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGS
SIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGV
TMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS
*
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mRNA from alignment at E-siliculosus-1a_F_contig1130:922..3436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1130.861.1 ID=mRNA_E-siliculosus-1a_F_contig1130.861.1|Name=mRNA_E-siliculosus-1a_F_contig1130.861.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2515bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1130:922..3436+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGCTTCACCCCCCGGGGCCACCACCACACCCGGCAAAAAAAAACAAAA AAAAAACATGCCGCTCGGGTTCGTAAACGGCGGCGGCGGCAACAGCCCGG AGGAGCTCTTCCGGAGCATCCCGCCCGTCTCCAAGGTGCTGATAGTGGGG ATGGTGGGCACGATGTTCTCCATCGTGCTGGGCGTTTGCTCCCCCTATGA GTACGCGCTTTCGTGGCCGCTGGTCTGGAACAAGTTCCACCTGTGGCGGC TCTTCACTTCGGGCATCTTCCCGGGAGAGCCAGGCTACGGCGCCCTCATG TCGATGTTCTCCATCGGAATGTTCTCGATGAGGTAGGTGGGTTTGCCGCC AGGAAAATAGTTTTTTTTGGCACGGGTATGCGCGGTGATGGATTTCCGTT GGACATCTCTCGTAGTGGTCCTTTTATATGAAGGCATGGAGTCACGCGGC AAGCAAGCCTGTTCGGCCGTTGTTTGTGCGTGTCAGGCCCGAGTCTGTCT CGAGTCCAAATTCGTACACCTCCCTCTTGTTATTGCGATTGAGCACCGCA TGTTTTTCGCGGAGAAGGGTTATTGGTTAGGTGGTAACCCATGCATGGCC TGTAATGTAAGGCACAGCAGTGATGGCATGGTATATCGCTTTCGCTGTTG TGCGGATGAGACGCATGCCAACGAGGCTTGTTTCGGAGGTTATGAGCACC TCCTCAGCAAATACTCAGAAAACTGATTGCGGGAAGGTTCGACCGACCCA TCTCGCTGCTCGCGCGCACGCGCGCGTGTGTGTATGTGGGCCGCCTCAAA TTTGAAGCCGCAGTAGACGAACGAAAGTAAAAGAGTGAGATCACCGTGCT TTCGGTGTGCGTGCGCGTCACCTGTGCCTGATACCGTACTTATTCTTTTT AGGGTTTAGCCTTGCATTGGTCGACAATGAGAAGGCGCTTGTTGAGTTGG TTTTGCGTGGTGGTGCGACACTGTATGTGGCGACTGTTGTTCATCGACAG TATGCAGAGGGCCACCGAGCTACTGTTTAGTACACGTGTGTTGTACCAGA GGCAACTCGGCGCAACGATAATAGTCCCGACATCCCGGGGAAGAAGGACA CTCAGACTAGGGTAGTACTGTAGCAGAGCCTCCGACACATCGCAAGGACG CAAGGACCACTCTGCAGTTGATTTTTTTCCGTGAAGGTGTTTGTTTTACT GACTGTGAGCTGCATCGGTCCTTGCTCCTGCTGTGTATCGCACATGACTG CTGTGATTGCCGTGCCAATACTGACCGTGCGTTCTGCCGCATGCACGGAC GTGTGCGCCGAACGGGCAGGTACGAGAAGGACGGGTTCAGCATGGGCGGC GGGGGCGGCAGCGCTGACTACGCGTACATGCTCCTCTTCGGCTTCGTGTG CATCGAGGCCTCGCTGCTACTGCTCTTCTACCAGCCCTTTATGATCTTTA CGGAGGCGATCATGTTCTACATCTGCTACGTCTGGAGCCGGAAAAATCCC GGCATGTCGGTCAGCTTCTGGGGCATTCTCATAAACGCTCTGTACGTCCC CTGGGTGATGATCGCGATGAGGTATGTACGAGCGCGTTGGTTTTGCTCGC GATTTCACTTCCATGATTGGGCGTGTGAGGGTGACGTGGGCACAAGATGA TTTAGATTTCTTTCTATTTCGCCGTTTCAGTCGGTACTCCTCGACCCCAC TATGTGGCAGGCCAGTGGTCGTGCGTATCCTATTCTCATCTCACGTGTGT ACAGGTACATGTTTTGCACGACGCACGCGTGACTGCTGTGCGCCGTTTGA GTCTGGCGACGTTCGTCTCCCTCTAGCGATTCGGCATTCCCCGTGGTGGG AATCTTCCAGCTCCCCGTCTCTGCTTGCGGTACATATTTTCTAGTCTTTT TGATGTTGAGCCTTTGGCGTCCATGGCGCTTCAAGGTTTCGTCTGTCTCA AAAACTTGTTAAATCCCCGTGGTATTGTGTGTGTGCGTTTGAATTAGCAT CGACCGCGCTAACAGGCTGACCGACAATAATGACAATACTTCAGTTTATA TTGGTACCGACTCCAACTTCGTCGAAAGCACGTCGACCACTACCGCAAGT TGAGGGAAGCAGGAAGAGGTACATAGTCAAGCCACCGAAGAGCCATCTTC GTCGCACTCATCTCTCCATCCGTGTGTGCTTGCTTGCTTGCCGTAGGGTG GTTCTCGGCTCGAGCATCTTCATGGCCCTCCTCGGCATCGCGGTAGGCCA TCTCTTCTACTTCCTCGTGGACGTGCTGCCGGACCTGCACGACATCGATC TGCTCCAGACACCCCAGTTCCTGGTCAACATGCTGGGCTGGGGCCGCGAA GGATCGGGCGTCACGATGCAAGCAGGTGGTGGCGGGGCGGCGGCGGGTGC TAGGGCAGGGGCTGCCGGGATGCCCGCCCCGGGTGCCGTTCGACCGCCGC GGGACATCCCACGAACCGGGGGAGGGTCGGGTTGGGGGACCGGGAGGACG CTAGGCTCTTCCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1130:922..3436+

>mRNA_E-siliculosus-1a_F_contig1130.861.1 ID=mRNA_E-siliculosus-1a_F_contig1130.861.1|Name=mRNA_E-siliculosus-1a_F_contig1130.861.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1130:922..3436+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGCTTCACCCCCCGGGGCCACCACCACACCCGGCAAAAAAAAACAAAA
AAAAAACATGCCGCTCGGGTTCGTAAACGGCGGCGGCGGCAACAGCCCGG
AGGAGCTCTTCCGGAGCATCCCGCCCGTCTCCAAGGTGCTGATAGTGGGG
ATGGTGGGCACGATGTTCTCCATCGTGCTGGGCGTTTGCTCCCCCTATGA
GTACGCGCTTTCGTGGCCGCTGGTCTGGAACAAGTTCCACCTGTGGCGGC
TCTTCACTTCGGGCATCTTCCCGGGAGAGCCAGGCTACGGCGCCCTCATG
TCGATGTTCTCCATCGGAATGTTCTCGATGAGAGGGCTTCACCCCCCGGG
GCCACCACCACACCCGGCAAAAAAAAACAAAAAAAAAACATGCCGCTCGG
GTTCGTAAACGGCGGCGGCGGCAACAGCCCGGAGGAGCTCTTCCGGAGCA
TCCCGCCCGTCTCCAAGGTGCTGATAGTGGGGATGGTGGGCACGATGTTC
TCCATCGTGCTGGGCGTTTGCTCCCCCTATGAGTACGCGCTTTCGTGGCC
GCTGGTCTGGAACAAGTTCCACCTGTGGCGGCTCTTCACTTCGGGCATCT
TCCCGGGAGAGCCAGGCTACGGCGCCCTCATGTCGATGTTCTCCATCGGA
ATGTTCTCGATGAGGTACGAGAAGGACGGGTTCAGCATGGGCGGCGGGGG
CGGCAGCGCTGACTACGCGTACATGCTCCTCTTCGGCTTCGTGTGCATCG
AGGCCTCGCTGCTACTGCTCTTCTACCAGCCCTTTATGATCTTTACGGAG
GCGATCATGTTCTACATCTGCTACGTCTGGAGCCGGAAAAATCCCGGCAT
GTCGGTCAGCTTCTGGGGCATTCTCATAAACGCTCTGTACGTCCCCTGGG
TGATGATCGCGATGAGGTACGAGAAGGACGGGTTCAGCATGGGCGGCGGG
GGCGGCAGCGCTGACTACGCGTACATGCTCCTCTTCGGCTTCGTGTGCAT
CGAGGCCTCGCTGCTACTGCTCTTCTACCAGCCCTTTATGATCTTTACGG
AGGCGATCATGTTCTACATCTGCTACGTCTGGAGCCGGAAAAATCCCGGC
ATGTCGGTCAGCTTCTGGGGCATTCTCATAAACGCTCTGTACGTCCCCTG
GGTGATGATCGCGATGAGGGTGGTTCTCGGCTCGAGCATCTTCATGGCCC
TCCTCGGCATCGCGGTAGGCCATCTCTTCTACTTCCTCGTGGACGTGCTG
CCGGACCTGCACGACATCGATCTGCTCCAGACACCCCAGTTCCTGGTCAA
CATGCTGGGCTGGGGCCGCGAAGGATCGGGCGTCACGATGCAAGCAGGTG
GTGGCGGGGCGGCGGCGGGTGCTAGGGCAGGGGCTGCCGGGATGCCCGCC
CCGGGTGCCGTTCGACCGCCGCGGGACATCCCACGAACCGGGGGAGGGTC
GGGTTGGGGGACCGGGAGGACGCTAGGCTCTTCCTGAGGTGGTTCTCGGC
TCGAGCATCTTCATGGCCCTCCTCGGCATCGCGGTAGGCCATCTCTTCTA
CTTCCTCGTGGACGTGCTGCCGGACCTGCACGACATCGATCTGCTCCAGA
CACCCCAGTTCCTGGTCAACATGCTGGGCTGGGGCCGCGAAGGATCGGGC
GTCACGATGCAAGCAGGTGGTGGCGGGGCGGCGGCGGGTGCTAGGGCAGG
GGCTGCCGGGATGCCCGCCCCGGGTGCCGTTCGACCGCCGCGGGACATCC
CACGAACCGGGGGAGGGTCGGGTTGGGGGACCGGGAGGACGCTAGGCTCT
TCCTGA
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