mRNA_E-siliculosus-1a_F_contig1130.861.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: D7FNT6_ECTSI (Derlin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT6_ECTSI) HSP 1 Score: 491 bits (1264), Expect = 9.590e-174 Identity = 249/290 (85.86%), Postives = 262/290 (90.34%), Query Frame = 1
Query: 31 PGKKKQKKNMPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 900
P +++KKNMPLG NG GG+SPEELFRSIPPVSKVLIVGMVGT+ S+VLGVCSPY+YALSWPLVWNKFHLWRLFTSG+FPG P Y LM M S+GMFS+RYEKDGFSMGGGGGSADYAYMLLFGFV IE SLLLLFYQPFMIFT AIMFYICYVWSRKNPGMSVSFWGI+INALYVPWVM+A+RVVLG SIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWG EGSGVTMQAGG AGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS
Sbjct: 10 PPHRQKKKNMPLGVFNGSGGSSPEELFRSIPPVSKVLIVGMVGTILSVVLGVCSPYQYALSWPLVWNKFHLWRLFTSGMFPGTPSYETLMLMISMGMFSIRYEKDGFSMGGGGGSADYAYMLLFGFVGIETSLLLLFYQPFMIFTTAIMFYICYVWSRKNPGMSVSFWGIIINALYVPWVMVALRVVLGHSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGHEGSGVTMQAGGXXXXXXXXXXXAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 299
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A6H5KW67_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW67_9PHAE) HSP 1 Score: 355 bits (910), Expect = 2.070e-121 Identity = 183/190 (96.32%), Postives = 187/190 (98.42%), Query Frame = 1
Query: 331 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 900
RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGI INALYVPWVMIAMRV +G+SIFMALLGIAVGHLFYFLVDVLPDLH+IDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAG+PAPG VRPPRDIPRTGGGSGWGTGRTLGSS
Sbjct: 10 RYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGIHINALYVPWVMIAMRVAIGASIFMALLGIAVGHLFYFLVDVLPDLHEIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGVPAPGVVRPPRDIPRTGGGSGWGTGRTLGSS 199
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A835YYA5_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA5_9STRA) HSP 1 Score: 241 bits (615), Expect = 1.130e-75 Identity = 130/273 (47.62%), Postives = 169/273 (61.90%), Query Frame = 1
Query: 82 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTG-RTLGS 897
G SPEE F+S+PPVSKVLI +VG+ ++LGV Y AL W + +KF +WRL+T+ +F G P + LM++ G +S+RYEKD F GGGGGSADYA+ML FG + L F PF+ + +MF I YVWSRK P + SFWGI + ++YVPWVM+A ++ G+S F LLGI VGHL+YFLVDV+PD D+L TP FL ++ G+G +GV PAPG PPR PR GGG WG+G R LG+
Sbjct: 11 GAAGSPEEWFKSLPPVSKVLITSLVGSTVLVMLGVIDAYNLALLWSPLRHKFEIWRLYTNAVFLGAPSFPFLMNLMIFGQYSIRYEKDAFDTGGGGGSADYAWMLAFGMAVLSGLSLAFFVVPFL--SIPLMFMIIYVWSRKVPDVPTSFWGITVQSVYVPWVMVAFNLLTGASAFNPLLGIGVGHLYYFLVDVVPDQFGKDVLTTPAFLTDLFGYGGLNTGVQR-----------------FPAPGHAAPPRGFPRPGGGHTWGSGGRPLGT 264
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A6H5KUK6_9PHAE (Derlin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK6_9PHAE) HSP 1 Score: 189 bits (481), Expect = 8.450e-57 Identity = 91/105 (86.67%), Postives = 96/105 (91.43%), Query Frame = 1
Query: 58 MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRY----EKDGFSMG 360
MPLGFVNGG GNSPEELFRSIPPVSKVLI+GMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPG+PGYGALMS+FSIGMFS+R+ EK F G
Sbjct: 1 MPLGFVNGGSGNSPEELFRSIPPVSKVLILGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGKPGYGALMSIFSIGMFSIRWSGHQEKSFFGAG 105
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A7S2XX42_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX42_9STRA) HSP 1 Score: 179 bits (453), Expect = 2.920e-51 Identity = 102/275 (37.09%), Postives = 165/275 (60.00%), Query Frame = 1
Query: 82 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDG-FSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSF-WGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWGREGSGVTMQAGGGGAAAGARAGAAGMPAPGAVRPPRDIPRTGGGSGWGTGRTLGSS 900
G G SP++ + S+P ++KV + + ++ G+ L++PL+W KF WRL T+ G+ G+G L++ + + +S +YE G F+ GGGGG +DYA+M++FG V + + PFM + ++F++ YVWSR+ P ++VSF +G+ I ++Y PW +A +++LG+S FMALLGIAVGHL+YFL +++PD +D ++L+TP F+++ G+G T A A G+ G G PA + P GG WG G LG++
Sbjct: 8 GQGGSPQDWYNSVPFITKVWLTSTLAVTLAVNFGILPAGHLFLNFPLIWKKFQFWRLLTNFTCMGKLGFGTLITFYMLYSYSEKYETGGCFNTGGGGGVSDYAFMMMFGMVVMNIIGYFM-NTPFM--AQPLVFFVMYVWSRRFPDLTVSFMFGVKIQSIYAPWAYVAFQILLGNSPFMALLGIAVGHLYYFLAEIVPDQYDFEILKTPVFMIHYFGYGAYHPVNTAPA----AQRGSVNGTGGQPANSSFPMP-------GGRQWGQGHVLGTN 268
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A7S0SWB6_9STRA (Derlin n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWB6_9STRA) HSP 1 Score: 168 bits (426), Expect = 3.430e-47 Identity = 79/214 (36.92%), Postives = 137/214 (64.02%), Query Frame = 1
Query: 82 GGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNML 723
G G+S ++ + +IP V+KVLI V + + P + L W +W+KFH+WRLFT +F G + LM + S++YE + ++ GGGG SADY Y++++ V + L++ +Y FMI ++ +M+ I YVWSR+ V+ +G LY+PW+ I + +++G+SI L+GIAVGH +YFL++V+P ++++DL++TP+F ++++
Sbjct: 9 GQGDSIQDWYNNIPFVTKVLITSTVVIGGLLTFQLIPPQDLILDWRFIWHKFHIWRLFTPFVFAGSFSFNFLMHTVVLYQNSLKYENNPYNTGGGGSSADYLYLIIYSIVLL---LVIAYYMNFMILSDPLMYVIVYVWSRRESESVVNMYGFKFKGLYLPWIYIGISMLMGNSIVPPLIGIAVGHSYYFLIEVMPTIYNVDLIRTPKFCIDII 219
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A482RVM1_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVM1_9ARCH) HSP 1 Score: 156 bits (394), Expect = 8.990e-43 Identity = 80/212 (37.74%), Postives = 126/212 (59.43%), Query Frame = 1
Query: 88 GNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNML 723
G++ + F S+P ++KV +V + T + + L WP V NKFH WRLFT +F G + + + RYE + F+ G GG SAD+ ++LL + + L+L + + +E +++ I YVWSR+ P ++ WG ALY+PWV IA+R+V+G +I L+G+AVGHL+YFLV VLP H +DL++TP+F V+++
Sbjct: 5 GDTLQGWFSSVPLITKVFLVSTLITGAGLSFKMLDGGSLVLLWPYVQNKFHFWRLFTCFVFAGPFSFNFALHTLVLYENCKRYESNPFNTGAGGNSADFLWLLL---IAMTVLLVLAYIFDMYVLSEPLLYVIMYVWSRREPDAMLNIWGFRFKALYLPWVYIAIRMVMGGAITEPLIGVAVGHLYYFLVQVLPATHGVDLIKTPKFCVDIV 213
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A8J2WZQ4_9STRA (Derlin n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZQ4_9STRA) HSP 1 Score: 157 bits (396), Expect = 9.020e-43 Identity = 81/224 (36.16%), Postives = 132/224 (58.93%), Query Frame = 1
Query: 64 LGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFM---IFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLG 726
LG V G N ++ S+PPV++V V GT I G+ PY SWP V ++F +WRL T F G + L++++ + +S YE ++ GGGG +ADY +M+ G +L+L FM +A+++ + YVWSR+NP VS +G + A+ +PW + A +V+G+S+ + L+GI VGHL+YF ++VLPD + +D+++TP+ L++ G
Sbjct: 7 LGRVGQGPANPVKDWLESLPPVTRVWFVASFGTTCLISFGLVDPYRLLWSWPAVRHRFEVWRLITPYFFFGGFSFPFLINLYLLQQYSKGYEISPYNTGGGGDTADYIWMMFLG------ALMLCGVSEFMGQVAPAQAMLYLVLYVWSRRNPTQQVSLYGFPVQAIMLPWALCAFNMVIGNSLLLPLMGIGVGHLYYFAIEVLPDAYGVDIVKTPRALIDACG 224
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A7S2SNX6_9STRA (Derlin n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNX6_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.170e-42 Identity = 81/224 (36.16%), Postives = 133/224 (59.38%), Query Frame = 1
Query: 58 MPLGFVNGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDGFSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQ-PFMIFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLG 726
M G G GN+P+E F S+PP+++ L+V ++ T + G+ SP++ L W VW F +WRL ++ +F G + L++++ + ++ RYE F+ G GG SAD+A+ML G C ++ F+ PFM + + F I YVW+RKNP S + A Y+PW M+A +++G+ I++ L+GIA GH++YFL P D+++TP F++ +LG
Sbjct: 1 MMRGMGRVGDGNTPQEWFYSLPPITRSLLVAVLATTAACSFGIVSPFQLHLDWTRVWRGFEIWRLASNFVFFGTFSFPFLINLYLLVQYASRYEVSPFNTGAGGSSADFAWMLTIG--CSLLAIASYFFGLPFM--GQPMSFMIMYVWTRKNPDEMTSIFFFKFQAFYLPWAMLAFNLLIGNDIYLPLMGIAAGHVYYFLHYTAPAELGRDIIKTPTFMIELLG 220
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Match: A0A1Z5KIS9_FISSO (Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIS9_FISSO) HSP 1 Score: 151 bits (381), Expect = 1.650e-40 Identity = 77/222 (34.68%), Postives = 132/222 (59.46%), Query Frame = 1
Query: 76 NGGGGNSPEELFRSIPPVSKVLIVGMVGTMFSIVLGVCSPYEYALSWPLVWNKFHLWRLFTSGIFPGEPGYGALMSMFSIGMFSMRYEKDG-FSMGGGGGSADYAYMLLFGFVCIEASLLLLFYQPFM--IFTEAIMFYICYVWSRKNPGMSVSFWGILINALYVPWVMIAMRVVLGSSIFMALLGIAVGHLFYFLVDVLPDLHDIDLLQTPQFLVNMLGWG 732
N G P++ F+S+P V++ + + + G+ SP + SWP++ + F LWRL T F G + L++MF + S +YEK G ++ G GGG+ADY +ML+FG V + + L+ M +F ++F++ Y WS+++P + WG+ + A Y+P+ +A+ + +G+ + + G+ VGHL+YFL +V+P +H D+L TPQFL++ LG G
Sbjct: 8 NVGEAAGPDQWFQSLPIVTQYWLGAAMVVTLAGNFGIISPMQLIFSWPMIKDNFELWRLLTPFCFVGAFSFNTLITMFMLVNMSQQYEKGGPYNTGAGGGTADYVFMLMFGAVVLLLTYPLMAAYAAMAPLFARNLVFFVLYTWSKRHPTSQANIWGVPVPAAYLPFAYVALTIFMGNPVMDLVHGMIVGHLYYFLAEVVPRVHGKDILVTPQFLIDRLGVG 229 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1130.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1130.861.1 >prot_E-siliculosus-1a_F_contig1130.861.1 ID=prot_E-siliculosus-1a_F_contig1130.861.1|Name=mRNA_E-siliculosus-1a_F_contig1130.861.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=301bp RASPPGATTTPGKKKQKKNMPLGFVNGGGGNSPEELFRSIPPVSKVLIVGback to top mRNA from alignment at E-siliculosus-1a_F_contig1130:922..3436+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1130.861.1 ID=mRNA_E-siliculosus-1a_F_contig1130.861.1|Name=mRNA_E-siliculosus-1a_F_contig1130.861.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2515bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1130:922..3436+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1130:922..3436+ >mRNA_E-siliculosus-1a_F_contig1130.861.1 ID=mRNA_E-siliculosus-1a_F_contig1130.861.1|Name=mRNA_E-siliculosus-1a_F_contig1130.861.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1130:922..3436+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |