mRNA_E-siliculosus-1a_F_contig113.860.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig113.860.1
Unique NamemRNA_E-siliculosus-1a_F_contig113.860.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 7.590e-85
Identity = 237/422 (56.16%), Postives = 268/422 (63.51%), Query Frame = 1
Query:   88 VTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXC-FGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDYDS---GDDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTVGVM 1341
            V +GP+R     A +V L+E CDGKSWY STKELQLASL+ CIACRN QTVHL VD   PRRLLA+ADAPPPHPKRLC TRVPRLR+RRVTWNM TAA+LR PIFAMTD++ LEF   F  SLEAV WP  L+T+EF   SPF+Q I+LV+WP  L+ + FG  F                                                        L QLIF   S  XXXXXXXXXXXX         XXXXXXXXXXXXXXXXX  FG     XX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GNG+V+++ F+Q IGSS+ P  LRRL LGH FRQSLQGLGTWMPNLE L LL Y     GD + LR I+WPK LR LT+   + ++GV+IP  V V+
Sbjct:   42 VQKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPAS--------------------------------------------LQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVL 419          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 2.830e-78
Identity = 229/424 (54.01%), Postives = 257/424 (60.61%), Query Frame = 1
Query:   97 GPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIE---------FCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXCFGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDY--DSG-DDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTV 1332
            GP+R+S  NA +V L+E  DGKSWY STKE QLASLE CIACRN+QT+ L VD+ TPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTW++ TAA LRN I++M D D LEF   FE SLEAV WPRRLKT+E         F + S F+QPI  V WP +LE+L FG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ++ F +                 R    G                                                                           VV+ SKFN+ IG+S WP ++ RLTLG  FRQSLQ LGTWMPNLET  LL +  DSG +DS LRGI+WPK LR+L V   S L GV IPSTV
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFGLFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGV-----------------RQEVLGD--------------------------------------------------------------------------VVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTV 338          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 5.360e-75
Identity = 130/194 (67.01%), Postives = 151/194 (77.84%), Query Frame = 1
Query:    1 LKILYDCVSLLEKEVSFSDPSSSPLPSPPVTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERF 582
            L +L +CV LLE+E +FS P SSPL SP  T GP+R+S      V L+E CDGKSWY STKELQLASLELC+ACR+YQT+HLTVDAHTPRRLLAAADAP PHPKRLCGTRVPRLRARR TWN+ TA+ +R  IFA  DVD LEF   F GSL+A+ WPRRLKTIEF ++SP N+ +D V WPASL ++  G  F
Sbjct:   98 LSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDF 291          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 3.400e-68
Identity = 111/154 (72.08%), Postives = 123/154 (79.87%), Query Frame = 1
Query:  121 NAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERF 582
            ++ +V L+E CDG SWY STKELQ ASLE CIACRNY  +HL VD   PR LLAAADAPPPHPKRLC TRVPRLRAR VTWNM+ AAEL NPIFA+TDVD LEF G F+GSLEAV WPRRLK IEF  TSPFNQP++L+KWP SL+ L  G  F
Sbjct:   16 SSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGGDF 169          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.370e-65
Identity = 274/406 (67.49%), Postives = 301/406 (74.14%), Query Frame = 1
Query:  151 CDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXCFGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDYDSG---DDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTVGVMDVDNVS 1359
            CDGK WY STKELQ ASLE CIACR YQT+ L VD  TPR LLAA DAP PH KR C TRVPRLRARRV WNM TA EL++PIFA+ DV RL+F   FEGSLE+V WP+RLK I+F   S FNQPI+ V++P SL EL   +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         S XXXXXXXXXXXXX      G+  XXXXXXXXXXXXXXXX     XXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +G +  +M+S+F               LTLGH+FRQSLQGLGTW+PNLE    LD+ +G   +DSLLRGI+WP  LR+L VF DS L+GV IPSTV V  + N S
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSRLCNES 407          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.440e-63
Identity = 270/407 (66.34%), Postives = 297/407 (72.97%), Query Frame = 1
Query:  109 NSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXCFGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDY--DSGDDSLLRGIKWPKDLRELTVFSDSDLEGVEIP 1323
            +S S   ++ L+E CDGK WY STKELQLASLE C+ACR YQ + L VDA TPR LLAA DAPPPH KR C TRVPRLRARRV WNM TA ELR  +FA+ DV+ L F G+F GSLEAV WP  LK I F  +S FNQ        ASL++LD     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  L + + +   XXXXXXXXXXXXXX  + TF   XXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     G    VM S FNQR+    WP S+RRLTLGH+F++SLQGLGT MPNLE   LLD+   SG +  LRGI+WPK LR L VFS+S L+GV IP
Sbjct:   15 SSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFF-SSEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKEDV-EXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSLRGIEWPKVLRHLVVFSNSSLDGVVIP 406          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.340e-58
Identity = 109/156 (69.87%), Postives = 120/156 (76.92%), Query Frame = 1
Query:   97 GPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEEL 564
            GP+ N+  NA  V L E  DGKSWY STKELQLASLE C+ACR YQT+HL VD   PR LLAAAD PP HPKRL   RVPRLRAR VTWNM TAAELR+PIFA+ D+D L+F   FEGSLEAV WPRRL++I F   SPFN PIDLVKWPASL+ L
Sbjct:   30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.200e-53
Identity = 105/155 (67.74%), Postives = 120/155 (77.42%), Query Frame = 1
Query:    1 LKILYDCVSLLEKEVSFSDPSSSPLPSPPVTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAV 465
            L IL DCVSLLEKE +FS P+   +P  P   GPSR+S  NA ++ L+E C+G+SWY STKELQLASLE C+ACRNYQT+HL VDA  PRRLLA ADAPPPHP+ LC TRVPRLRARRVTW M+ AAEL  PIFAMTDVD L+F    E SLEA+
Sbjct:   75 LSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEAL 226          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.200e-52
Identity = 112/196 (57.14%), Postives = 127/196 (64.80%), Query Frame = 1
Query:    1 LKILYDCVSLLEKEVSFSDPSSSPLPSPPVTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKR-LCGTRVPRLRAR-RVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERF 582
            L I   CVSLLEKE + S   SSPL       GP R+S  NA +V LSE CDGKSWY STKELQLASL  C ACRN+QTVHL VD H PRRLLAAADAPPP  +  +  TR P   A   V     +  E    +FAMTDVD LEF   FEG+LEAV WPR LKTI+    S F +PIDL++WP SL+ L+FG  F
Sbjct:   98 LSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFGWEF 293          
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 9.800e-34
Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 1
Query: 1069 VVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDY--DSGDDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTVGVMDVDNVSFR 1365
            ++M S+FNQRIG S WPPSLRRLTLGH+FRQSLQGLGTWMPNLE+LRLL++  D  +DSLLR I+WPK L +LTVF +S LE V IP+ V V+   N S R
Sbjct:    1 MIMRSEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQNDSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEVLHRYNESLR 101          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JRF9_9PHAE7.590e-8556.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE2.830e-7854.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE5.360e-7567.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI3.400e-6872.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYF0_9PHAE1.370e-6567.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE7.440e-6366.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZZ4_9PHAE1.340e-5869.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI1.200e-5367.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI1.200e-5257.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCG0_ECTSI9.800e-3466.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig113contigE-siliculosus-1a_F_contig113:71961..75928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1239
Model size1734
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig113.860.1prot_E-siliculosus-1a_F_contig113.860.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig113 74324..75562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927637.9752135-UTR-E-siliculosus-1a_F_contig113:71960..720571622927637.9752135-UTR-E-siliculosus-1a_F_contig113:71960..72057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig113 71961..72057 +
1696318620.786164-UTR-E-siliculosus-1a_F_contig113:71960..720571696318620.786164-UTR-E-siliculosus-1a_F_contig113:71960..72057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig113 71961..72057 +
1622927638.0005133-UTR-E-siliculosus-1a_F_contig113:74291..743231622927638.0005133-UTR-E-siliculosus-1a_F_contig113:74291..74323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig113 74292..74323 +
1696318620.7965474-UTR-E-siliculosus-1a_F_contig113:74291..743231696318620.7965474-UTR-E-siliculosus-1a_F_contig113:74291..74323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig113 74292..74323 +
1622927638.0338724-UTR-E-siliculosus-1a_F_contig113:75562..759281622927638.0338724-UTR-E-siliculosus-1a_F_contig113:75562..75928Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig113 75563..75928 +
1696318620.8175573-UTR-E-siliculosus-1a_F_contig113:75562..759281696318620.8175573-UTR-E-siliculosus-1a_F_contig113:75562..75928Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig113 75563..75928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927638.0142765-CDS-E-siliculosus-1a_F_contig113:74323..755621622927638.0142765-CDS-E-siliculosus-1a_F_contig113:74323..75562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig113 74324..75562 +
1696318620.8068805-CDS-E-siliculosus-1a_F_contig113:74323..755621696318620.8068805-CDS-E-siliculosus-1a_F_contig113:74323..75562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig113 74324..75562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig113.860.1

>prot_E-siliculosus-1a_F_contig113.860.1 ID=prot_E-siliculosus-1a_F_contig113.860.1|Name=mRNA_E-siliculosus-1a_F_contig113.860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=413bp
MVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLL
AAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLE
FSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGER
FNQPIEGVCWPSSLRVLYFGSRFNQPIAGAILPATLLLLGFGQDFDHPIE
EVLWPATLDQLIFDIGSLFNYPIEDVAWPPSLRYLTFGQFFNQPVARVKF
PASLQELCFGWYFNQPVEGTVWPNSLQRLVFGRWFNQPVDNVRWAASLEE
ISFGWYENRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLG
TWMPNLETLRLLDYDSGDDSLLRGIKWPKDLRELTVFSDSDLEGVEIPST
VGVMDVDNVSFR*
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mRNA from alignment at E-siliculosus-1a_F_contig113:71961..75928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig113.860.1 ID=mRNA_E-siliculosus-1a_F_contig113.860.1|Name=mRNA_E-siliculosus-1a_F_contig113.860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig113:71961..75928+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGAAGATTCTTTATGACTGCGTCTCTTTGCTGGAGAAGGAGGTTTCGTT TTCAGATCCGTCGTCTTCTCCCCTTCCTTCGCCGCCGGTCACGCGTGGTG AGATTCTTGATGTCTGGAAAAAGGATTCGCCGTAAAGTCTGCTTGCATTG CAGTAAAGATGCGCCGAGCGTATGACAAAACGAACGTCAATACCAACCTG AAAGGAGACAAAACGTTGTGTCTGGTGCATTGACCCTTGACGTATTGCCC CACGGTTTGACGGGGATTCCGGCCTTGCACAGCATCATACCTCCCGCCAT TACCAAAATCGTTGGTCCGAGAAGTGATTTTTATGTGCTGTGTGTTTTGT CTTCTTGCCCCGTTCAGGTAGTTCAAAATGCAACGTTCGTTTTGGTCCAA AGAAATCACCACGGTATGATATAGTCTGAGCCATACAGCGCTCCTCAATG AATCCAATTCCGTTGCTGGATAACCGTGCAACTATTTGGTGGTTAGGTAG CGGTGAGTGCGGACCTGGAGTGCAAAGGCTATAACCCTATTCTCTGGCAC ACGAAGAATCAAGAATGTTCAAGTGTTTTGCCGACACGAAATTGACGATC ACACCGACATTCGATGACAGTCGTCCACGTCTCCCAGCTGTAGTCAGTGA ACCCAGATCAAACCTCCAACGTTGTCATTAGCGCTAAAGGGCCTTTTTCG CGGGCGAGTGGGTTGCGTGTGGGGTCATTCGATCGCGACATTCAAGCTTC AAAGACGATTTCGCGTTGTTCGAAACAGGTCCATTCTTGTTTCGTTCCCA CTTGAGTATGTTTTTTCGTTCCCACTTGAGAATAGAACACAAATTGAGCG GTCGGTGGACAGATTGAAACCTGTCGTGTCGCCAGCGATGTTCTCATCTG TGGGTGAAGTCACCCAGGAAATTCACTTCGCCTGCATCTGATTGAGACTC GTTCGTTGAGGTGGCAGCGCCCCAAGATTTATCTCAGTTCATCTACTATT TTTGTCGAGCCATGTGGTGTGAACGAGTGCTGTCCGCTCCGGCGTTAGAT ATATCCCCCTCTATTGCACAGCATCATGACACGACGCGACTTGATTAGCT GTCTCCGCTGTCAGCGCCCGTGGCGGCGAAACAGTTGACTTAGGGTGCTT GCGAGGACTGTTCGGGTGCACCACGCGCAGAGTTCACTCCTCTATGACCG CTAAGGCCGAGTGACGTTCTCTTGCAATCTTACCGGTCACCGAGGTTTAT CGGACGGCCCTCTCGTGCCATTTTTGGGGCACGATCCGCGAATATACGAA GAGGTGACTCGGGCGGAGTTTTCACGTCCTGAGCATGACCAGACACACGG CCTGATGTTGGCTTCCTATCGGCGTTCTAAGACCGGACTACCTTTCTCCC CTTTGGTCCAGTCACTTGTCCTTGAAATCACCTCACGCAAACGTACCCCG ATCGCCTGTCTTTCGGATCATGCCGAGTCAAACCAGCCCGATCAACTTGT CGGTCAGATGACGTGGGGCGAAAAACACAGATTTGACACAAGATCACACA CCAGACCCCGGCGATATCACGTTGTCTTTCAAAACATATCACCGGATATT GCCGGGTGTTGTATTCTTTGGGGAGGTGTTACCTCGTGTAGGTCTGGTGG TCGAAGGCAGGTTACGGTGGGTGCGCAGGGCGTACGGTTACCAGGGTGCG ACTGCCTGCAAAGAACTACAGCACATAACACAACTGCCGCAAATGTAGCG TGTATGGCACTGAACGGGGGTCACTGGTTCTGAGGGTGCTTGCAGTCTGG AAATGATGGGGGACGCCAGGTGACGAACCCCATTGACCGCAAGTGTAGAA GATTTTTGCTCGGTAGATCCTGCACTGCTACGGTCGACCAAGTGACGGAA GGCCAGACGTAGCTCCAGCGGGATCCTGTTCTCGCTGCGGGTTGATGTTG TTAGAGGTCTCCGTACGGGGCGGTTTCCCGGCGGCCAAGCTGTGTGGGAT CAGGGACCACTGCTTTGTCATCACCATGGTCACGGTAGTATGGGCTCTGT GATTACATGCGAAGTTCTGCAGATCACTTCCGGCGGGCATACCCCGATCA CCTTTTCCCTTCAGATCACCATGGAGCAAGCACACAGATCGCCTGGGTCG TACCCATCAAAAGGGACGGAGCCATCCAAAGAGCCAGCTCCATCTCTGGG GATCTGATCCGTCCCATGTTTGTGTGCAATATTCCTTCCCTCGAAGACCG CTGCAGCCGATCATAGAACGATAGACGATATATCTTGCTTGACCTCTTGT GTACGCCCATTCGCCTTGGTGTGTTCCGCAGGACCCAGTCGTAACTCACG CTCGAACGCCTTCATGGTTGTTTTGAGCGAGGCGTGCGATGGGAAGAGTT GGTACGCGTCGACCAAGGAGCTGCAGCTGGCGTCCTTGGAGTTGTGCATC GCGTGCAGGAATTATCAGACCGTGCACTTGACCGTCGACGCACATACCCC ACGCAGGCTGTTGGCCGCCGCAGATGCCCCCCCACCGCACCCGAAGCGGT TGTGTGGGACTCGTGTGCCACGGCTACGAGCGCGCCGCGTCACATGGAAC ATGCAAACAGCAGCGGAATTGAGAAACCCGATATTTGCAATGACGGACGT GGACCGGCTGGAGTTCAGCGGTATCTTTGAAGGCAGCCTTGAGGCTGTGG AATGGCCGCGACGCCTGAAAACGATTGAGTTTTGCGAAACTTCTCCATTC AACCAGCCGATCGACCTGGTAAAATGGCCAGCGTCTCTGGAGGAGCTTGA CTTCGGCGAGAGATTCAACCAACCGATTGAAGGAGTCTGCTGGCCGTCGT CCCTGCGGGTACTATATTTCGGGTCGAGATTCAACCAACCAATCGCAGGA GCCATTCTGCCTGCTACTCTGCTGCTGCTTGGCTTCGGGCAGGACTTTGA TCATCCGATCGAGGAAGTCCTGTGGCCGGCAACGCTGGACCAGCTCATTT TTGACATTGGTTCGCTTTTCAACTATCCCATAGAAGATGTAGCGTGGCCG CCGTCCTTGCGATATCTTACTTTCGGACAATTCTTTAATCAGCCGGTCGC ACGGGTCAAGTTTCCGGCGTCGCTGCAGGAGCTTTGCTTTGGGTGGTATT TCAACCAGCCCGTTGAGGGTACTGTGTGGCCAAATTCGCTTCAGAGGCTC GTTTTTGGACGGTGGTTTAACCAGCCAGTTGACAACGTGAGGTGGGCGGC ATCCTTGGAAGAAATTTCTTTTGGATGGTACGAGAATAGAGGGGGCAACG GGGTGGTCATGTACTCGAAGTTCAACCAGCGTATCGGCAGCAGTATTTGG CCTCCATCCCTTCGGCGACTTACACTAGGCCACAGGTTCAGGCAGTCACT GCAAGGGCTGGGCACATGGATGCCCAACCTTGAGACACTTCGTCTTCTTG ACTACGATTCAGGTGATGATAGCCTCCTTCGCGGGATCAAATGGCCTAAG GACCTTCGCGAGCTCACCGTGTTTAGCGACTCGGATTTAGAGGGGGTGGA AATTCCGTCAACTGTAGGGGTAATGGACGTTGACAACGTGTCCTTCAGAT GACGGTATTCTACACCTACCACCTGCAGATGAGGTTGCGCTGAGAAGAGC ATTCTGCAAGTAACATGTTTTCCGAGAATTTTTGCGACAAGCTTTCGAGC GAGTCGCTCGATAGGAAGGTACGACAGGAAGAAAGTGCGTGGGAAATGGA GGTGGGGTACCGTTGCCAGCTGAATTGCTTGAAATTTGCCGTGGAATGGT GATGTTTCGGCTGAATGAGTATCTGCTGCTCGTTCGTATGAAGTACAATA TCTAGTGTTCCAGCTACCAAGAGGTAGCGTACTTTCATCTGGTTGACATC AGAGTTGGCATCTACTGTATGCCTAAACATGCGCACTCCGGATAAGCCAT TGTGAGGATTGTGACGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig113:71961..75928+

>mRNA_E-siliculosus-1a_F_contig113.860.1 ID=mRNA_E-siliculosus-1a_F_contig113.860.1|Name=mRNA_E-siliculosus-1a_F_contig113.860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2478bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig113:71961..75928+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTGTTTTGAGCGAGGCGTGCGATGGGAAGAGTTGGTACGCGTCGAC
CAAGGAGCTGCAGCTGGCGTCCTTGGAGTTGTGCATCGCGTGCAGGAATT
ATCAGACCGTGCACTTGACCGTCGACGCACATACCCCACGCAGGCTGTTG
GCCGCCGCAGATGCCCCCCCACCGCACCCGAAGCGGTTGTGTGGGACTCG
TGTGCCACGGCTACGAGCGCGCCGCGTCACATGGAACATGCAAACAGCAG
CGGAATTGAGAAACCCGATATTTGCAATGACGGACGTGGACCGGCTGGAG
TTCAGCGGTATCTTTGAAGGCAGCCTTGAGGCTGTGGAATGGCCGCGACG
CCTGAAAACGATTGAGTTTTGCGAAACTTCTCCATTCAACCAGCCGATCG
ACCTGGTAAAATGGCCAGCGTCTCTGGAGGAGCTTGACTTCGGCGAGAGA
TTCAACCAACCGATTGAAGGAGTCTGCTGGCCGTCGTCCCTGCGGGTACT
ATATTTCGGGTCGAGATTCAACCAACCAATCGCAGGAGCCATTCTGCCTG
CTACTCTGCTGCTGCTTGGCTTCGGGCAGGACTTTGATCATCCGATCGAG
GAAGTCCTGTGGCCGGCAACGCTGGACCAGCTCATTTTTGACATTGGTTC
GCTTTTCAACTATCCCATAGAAGATGTAGCGTGGCCGCCGTCCTTGCGAT
ATCTTACTTTCGGACAATTCTTTAATCAGCCGGTCGCACGGGTCAAGTTT
CCGGCGTCGCTGCAGGAGCTTTGCTTTGGGTGGTATTTCAACCAGCCCGT
TGAGGGTACTGTGTGGCCAAATTCGCTTCAGAGGCTCGTTTTTGGACGGT
GGTTTAACCAGCCAGTTGACAACGTGAGGTGGGCGGCATCCTTGGAAGAA
ATTTCTTTTGGATGGTACGAGAATAGAGGGGGCAACGGGGTGGTCATGTA
CTCGAAGTTCAACCAGCGTATCGGCAGCAGTATTTGGCCTCCATCCCTTC
GGCGACTTACACTAGGCCACAGGTTCAGGCAGTCACTGCAAGGGCTGGGC
ACATGGATGCCCAACCTTGAGACACTTCGTCTTCTTGACTACGATTCAGG
TGATGATAGCCTCCTTCGCGGGATCAAATGGCCTAAGGACCTTCGCGAGC
TCACCGTGTTTAGCGACTCGGATTTAGAGGGGGTGGAAATTCCGTCAACT
GTAGGGGTAATGGACGTTGACAACGTGTCCTTCAGATGAATGGTTGTTTT
GAGCGAGGCGTGCGATGGGAAGAGTTGGTACGCGTCGACCAAGGAGCTGC
AGCTGGCGTCCTTGGAGTTGTGCATCGCGTGCAGGAATTATCAGACCGTG
CACTTGACCGTCGACGCACATACCCCACGCAGGCTGTTGGCCGCCGCAGA
TGCCCCCCCACCGCACCCGAAGCGGTTGTGTGGGACTCGTGTGCCACGGC
TACGAGCGCGCCGCGTCACATGGAACATGCAAACAGCAGCGGAATTGAGA
AACCCGATATTTGCAATGACGGACGTGGACCGGCTGGAGTTCAGCGGTAT
CTTTGAAGGCAGCCTTGAGGCTGTGGAATGGCCGCGACGCCTGAAAACGA
TTGAGTTTTGCGAAACTTCTCCATTCAACCAGCCGATCGACCTGGTAAAA
TGGCCAGCGTCTCTGGAGGAGCTTGACTTCGGCGAGAGATTCAACCAACC
GATTGAAGGAGTCTGCTGGCCGTCGTCCCTGCGGGTACTATATTTCGGGT
CGAGATTCAACCAACCAATCGCAGGAGCCATTCTGCCTGCTACTCTGCTG
CTGCTTGGCTTCGGGCAGGACTTTGATCATCCGATCGAGGAAGTCCTGTG
GCCGGCAACGCTGGACCAGCTCATTTTTGACATTGGTTCGCTTTTCAACT
ATCCCATAGAAGATGTAGCGTGGCCGCCGTCCTTGCGATATCTTACTTTC
GGACAATTCTTTAATCAGCCGGTCGCACGGGTCAAGTTTCCGGCGTCGCT
GCAGGAGCTTTGCTTTGGGTGGTATTTCAACCAGCCCGTTGAGGGTACTG
TGTGGCCAAATTCGCTTCAGAGGCTCGTTTTTGGACGGTGGTTTAACCAG
CCAGTTGACAACGTGAGGTGGGCGGCATCCTTGGAAGAAATTTCTTTTGG
ATGGTACGAGAATAGAGGGGGCAACGGGGTGGTCATGTACTCGAAGTTCA
ACCAGCGTATCGGCAGCAGTATTTGGCCTCCATCCCTTCGGCGACTTACA
CTAGGCCACAGGTTCAGGCAGTCACTGCAAGGGCTGGGCACATGGATGCC
CAACCTTGAGACACTTCGTCTTCTTGACTACGATTCAGGTGATGATAGCC
TCCTTCGCGGGATCAAATGGCCTAAGGACCTTCGCGAGCTCACCGTGTTT
AGCGACTCGGATTTAGAGGGGGTGGAAATTCCGTCAACTGTAGGGGTAAT
GGACGTTGACAACGTGTCCTTCAGATGA
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