mRNA_E-siliculosus-1a_F_contig113.860.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 280 bits (715), Expect = 7.590e-85 Identity = 237/422 (56.16%), Postives = 268/422 (63.51%), Query Frame = 1
Query: 88 VTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXC-FGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDYDS---GDDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTVGVM 1341
V +GP+R A +V L+E CDGKSWY STKELQLASL+ CIACRN QTVHL VD PRRLLA+ADAPPPHPKRLC TRVPRLR+RRVTWNM TAA+LR PIFAMTD++ LEF F SLEAV WP L+T+EF SPF+Q I+LV+WP L+ + FG F L QLIF S XXXXXXXXXXXX XXXXXXXXXXXXXXXXX FG XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNG+V+++ F+Q IGSS+ P LRRL LGH FRQSLQGLGTWMPNLE L LL Y GD + LR I+WPK LR LT+ + ++GV+IP V V+
Sbjct: 42 VQKGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPAS--------------------------------------------LQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQVL 419
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 260 bits (664), Expect = 2.830e-78 Identity = 229/424 (54.01%), Postives = 257/424 (60.61%), Query Frame = 1
Query: 97 GPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIE---------FCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXCFGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDY--DSG-DDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTV 1332
GP+R+S NA +V L+E DGKSWY STKE QLASLE CIACRN+QT+ L VD+ TPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTW++ TAA LRN I++M D D LEF FE SLEAV WPRRLKT+E F + S F+QPI V WP +LE+L FG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ F + R G VV+ SKFN+ IG+S WP ++ RLTLG FRQSLQ LGTWMPNLET LL + DSG +DS LRGI+WPK LR+L V S L GV IPSTV
Sbjct: 6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFGLFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFGV-----------------RQEVLGD--------------------------------------------------------------------------VVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTV 338
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 258 bits (660), Expect = 5.360e-75 Identity = 130/194 (67.01%), Postives = 151/194 (77.84%), Query Frame = 1
Query: 1 LKILYDCVSLLEKEVSFSDPSSSPLPSPPVTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERF 582
L +L +CV LLE+E +FS P SSPL SP T GP+R+S V L+E CDGKSWY STKELQLASLELC+ACR+YQT+HLTVDAHTPRRLLAAADAP PHPKRLCGTRVPRLRARR TWN+ TA+ +R IFA DVD LEF F GSL+A+ WPRRLKTIEF ++SP N+ +D V WPASL ++ G F
Sbjct: 98 LSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDF 291
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 229 bits (583), Expect = 3.400e-68 Identity = 111/154 (72.08%), Postives = 123/154 (79.87%), Query Frame = 1
Query: 121 NAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERF 582
++ +V L+E CDG SWY STKELQ ASLE CIACRNY +HL VD PR LLAAADAPPPHPKRLC TRVPRLRAR VTWNM+ AAEL NPIFA+TDVD LEF G F+GSLEAV WPRRLK IEF TSPFNQP++L+KWP SL+ L G F
Sbjct: 16 SSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGGDF 169
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 229 bits (583), Expect = 1.370e-65 Identity = 274/406 (67.49%), Postives = 301/406 (74.14%), Query Frame = 1
Query: 151 CDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXCFGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDYDSG---DDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTVGVMDVDNVS 1359
CDGK WY STKELQ ASLE CIACR YQT+ L VD TPR LLAA DAP PH KR C TRVPRLRARRV WNM TA EL++PIFA+ DV RL+F FEGSLE+V WP+RLK I+F S FNQPI+ V++P SL EL + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S XXXXXXXXXXXXX G+ XXXXXXXXXXXXXXXX XXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +G + +M+S+F LTLGH+FRQSLQGLGTW+PNLE LD+ +G +DSLLRGI+WP LR+L VF DS L+GV IPSTV V + N S
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSRLCNES 407
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 225 bits (573), Expect = 7.440e-63 Identity = 270/407 (66.34%), Postives = 297/407 (72.97%), Query Frame = 1
Query: 109 NSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDQLIFDIGSXXXXXXXXXXXXXXLRYLTFGQFXXXXXXXXXXXXXXXXXCFGWYXXXXXEGTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGNGVVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDY--DSGDDSLLRGIKWPKDLRELTVFSDSDLEGVEIP 1323
+S S ++ L+E CDGK WY STKELQLASLE C+ACR YQ + L VDA TPR LLAA DAPPPH KR C TRVPRLRARRV WNM TA ELR +FA+ DV+ L F G+F GSLEAV WP LK I F +S FNQ ASL++LD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L + + + XXXXXXXXXXXXXX + TF XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G VM S FNQR+ WP S+RRLTLGH+F++SLQGLGT MPNLE LLD+ SG + LRGI+WPK LR L VFS+S L+GV IP
Sbjct: 15 SSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFF-SSEFNQXXXXXXXXASLQKLDLENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLKEDV-EXXXXXXXXXXXXXXXXXXEWATFXXXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHDGEGFENAVMLSAFNQRVDMCEWPVSMRRLTLGHKFKESLQGLGTRMPNLEAFHLLDHRNGSGSEDSLRGIEWPKVLRHLVVFSNSSLDGVVIP 406
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 217 bits (552), Expect = 1.340e-58 Identity = 109/156 (69.87%), Postives = 120/156 (76.92%), Query Frame = 1
Query: 97 GPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEEL 564
GP+ N+ NA V L E DGKSWY STKELQLASLE C+ACR YQT+HL VD PR LLAAAD PP HPKRL RVPRLRAR VTWNM TAAELR+PIFA+ D+D L+F FEGSLEAV WPRRL++I F SPFN PIDLVKWPASL+ L
Sbjct: 30 GPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 197 bits (500), Expect = 1.200e-53 Identity = 105/155 (67.74%), Postives = 120/155 (77.42%), Query Frame = 1
Query: 1 LKILYDCVSLLEKEVSFSDPSSSPLPSPPVTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAV 465
L IL DCVSLLEKE +FS P+ +P P GPSR+S NA ++ L+E C+G+SWY STKELQLASLE C+ACRNYQT+HL VDA PRRLLA ADAPPPHP+ LC TRVPRLRARRVTW M+ AAEL PIFAMTDVD L+F E SLEA+
Sbjct: 75 LSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEAL 226
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 191 bits (486), Expect = 1.200e-52 Identity = 112/196 (57.14%), Postives = 127/196 (64.80%), Query Frame = 1
Query: 1 LKILYDCVSLLEKEVSFSDPSSSPLPSPPVTRGPSRNSRSNAFMVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLAAADAPPPHPKR-LCGTRVPRLRAR-RVTWNMQTAAELRNPIFAMTDVDRLEFSGIFEGSLEAVEWPRRLKTIEFCETSPFNQPIDLVKWPASLEELDFGERF 582
L I CVSLLEKE + S SSPL GP R+S NA +V LSE CDGKSWY STKELQLASL C ACRN+QTVHL VD H PRRLLAAADAPPP + + TR P A V + E +FAMTDVD LEF FEG+LEAV WPR LKTI+ S F +PIDL++WP SL+ L+FG F
Sbjct: 98 LSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFGWEF 293
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Match: D8LCG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI) HSP 1 Score: 133 bits (335), Expect = 9.800e-34 Identity = 67/101 (66.34%), Postives = 80/101 (79.21%), Query Frame = 1
Query: 1069 VVMYSKFNQRIGSSIWPPSLRRLTLGHRFRQSLQGLGTWMPNLETLRLLDY--DSGDDSLLRGIKWPKDLRELTVFSDSDLEGVEIPSTVGVMDVDNVSFR 1365
++M S+FNQRIG S WPPSLRRLTLGH+FRQSLQGLGTWMPNLE+LRLL++ D +DSLLR I+WPK L +LTVF +S LE V IP+ V V+ N S R
Sbjct: 1 MIMRSEFNQRIGRSAWPPSLRRLTLGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQNDSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEVLHRYNESLR 101 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig113.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig113.860.1 >prot_E-siliculosus-1a_F_contig113.860.1 ID=prot_E-siliculosus-1a_F_contig113.860.1|Name=mRNA_E-siliculosus-1a_F_contig113.860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=413bp MVVLSEACDGKSWYASTKELQLASLELCIACRNYQTVHLTVDAHTPRRLLback to top mRNA from alignment at E-siliculosus-1a_F_contig113:71961..75928+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig113.860.1 ID=mRNA_E-siliculosus-1a_F_contig113.860.1|Name=mRNA_E-siliculosus-1a_F_contig113.860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3968bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig113:71961..75928+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig113:71961..75928+ >mRNA_E-siliculosus-1a_F_contig113.860.1 ID=mRNA_E-siliculosus-1a_F_contig113.860.1|Name=mRNA_E-siliculosus-1a_F_contig113.860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2478bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig113:71961..75928+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |