mRNA_E-siliculosus-1a_F_contig11275.848.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11275.848.1
Unique NamemRNA_E-siliculosus-1a_F_contig11275.848.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11275.848.1 vs. uniprot
Match: D7G039_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G039_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 1.370e-134
Identity = 222/270 (82.22%), Postives = 239/270 (88.52%), Query Frame = 1 
Query:    1 QADEELLVAILVQGYENAVKDSPCPQAEQQHXXXXXXDDDVLNAIMEEQEASTAILTARAKAYVQQVATASENLQKAIAEAREQEAIADKARANRHARAMEYVGASAMYEGSQLYDEPCREQCKKRARQERKTTPFSNLRQTSEDNINELIWLQKQSHLQEARKNFEAAQKTLHTKKAERDQLAREHDKAETAASAALIALGDKVKQAEVDAFDSLLEFKQACADTPCNSSRMNTLWAVCDVIDELVDGPSLQQSKSAGRRRTKRRRSSR 810
            +A+E+LLV+ILVQGYENAVKDSPCPQAEQQH      D+  L A M+E EASTA L ARAK Y QQVA ASE+LQKAIAEAREQEAIADKARANRH RAM+YVGASA+YEGSQLYDEPCREQCKKRARQERK  PFS+L+Q SED+I ELIWLQ+QSHLQEARKNFEA QKTL TKKAERDQLAREHDKAETAASAAL +L  ++KQAEVDAFDSLLEFKQA ADTPC+SSR NTLWAVCDVIDELVDGPS QQ KSAGRRRTKR RSSR
Sbjct:   67 EAEEDLLVSILVQGYENAVKDSPCPQAEQQHQHTTPKDE-ALYAAMKEHEASTAALAARAKVYAQQVAAASEDLQKAIAEAREQEAIADKARANRHDRAMQYVGASAIYEGSQLYDEPCREQCKKRARQERKPMPFSDLQQASEDDIYELIWLQRQSHLQEARKNFEAEQKTLLTKKAERDQLAREHDKAETAASAALESLRKRMKQAEVDAFDSLLEFKQAYADTPCDSSRFNTLWAVCDVIDELVDGPSPQQRKSAGRRRTKRTRSSR 335
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BLAST of mRNA_E-siliculosus-1a_F_contig11275.848.1 vs. uniprot
Match: A0A6H5K3X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X7_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.360e-41
Identity = 80/102 (78.43%), Postives = 90/102 (88.24%), Query Frame = 1 
Query:  502 AAQKTLHTKKAERDQLAREHDKAETAASAALIALGDKVKQAEVDAFDSLLEFKQACADTPCNSSRMNTLWAVCDVIDELVDGPSLQQSKSAGRRRTKRRRSS 807
            + +KTLHTK+AERDQLAREHDKAETAASAAL +LG +V QAEVDAFDSL+ FK+ACADTPC+ SR+ TLWAVCDVIDEL+D PS  QSK AGRRRTKR RSS
Sbjct:    3 STKKTLHTKRAERDQLAREHDKAETAASAALESLGKRVTQAEVDAFDSLVGFKEACADTPCDCSRLKTLWAVCDVIDELMDEPS-PQSKRAGRRRTKRTRSS 103
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BLAST of mRNA_E-siliculosus-1a_F_contig11275.848.1 vs. uniprot
Match: A0A6H5K6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.200e-20
Identity = 61/84 (72.62%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    4 ADEELLVAILVQGYENAVKDSPCPQAEQQHXXXXXXDDDVLNAIMEEQEASTAILTARAKAYVQQVATASENLQKAIAEAREQE 255
            ADEELLV+IL Q YEN+V DSPC QAEQQH      DD +  A M+EQEASTA L ARAKAY Q+VA ASENLQKAIAEAREQE
Sbjct:    6 ADEELLVSILPQEYENSVMDSPCRQAEQQHRHTTLGDDALYTA-MKEQEASTAALIARAKAYAQEVAAASENLQKAIAEAREQE 88
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11275.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G039_ECTSI1.370e-13482.22Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5K3X7_9PHAE2.360e-4178.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6A7_9PHAE4.200e-2072.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11275contigE-siliculosus-1a_F_contig11275:599..1882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size813
Model size813
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927635.812849-CDS-E-siliculosus-1a_F_contig11275:598..13571622927635.812849-CDS-E-siliculosus-1a_F_contig11275:598..1357Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11275 599..1357 +
1696318619.6277022-CDS-E-siliculosus-1a_F_contig11275:598..13571696318619.6277022-CDS-E-siliculosus-1a_F_contig11275:598..1357Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11275 599..1357 +
1622927635.8231409-CDS-E-siliculosus-1a_F_contig11275:1828..18821622927635.8231409-CDS-E-siliculosus-1a_F_contig11275:1828..1882Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11275 1829..1882 +
1696318619.6448486-CDS-E-siliculosus-1a_F_contig11275:1828..18821696318619.6448486-CDS-E-siliculosus-1a_F_contig11275:1828..1882Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11275 1829..1882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11275.848.1prot_E-siliculosus-1a_F_contig11275.848.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11275 599..1882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11275.848.1

>prot_E-siliculosus-1a_F_contig11275.848.1 ID=prot_E-siliculosus-1a_F_contig11275.848.1|Name=mRNA_E-siliculosus-1a_F_contig11275.848.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=271bp
QADEELLVAILVQGYENAVKDSPCPQAEQQHHRTTTLDDDVLNAIMEEQE
ASTAILTARAKAYVQQVATASENLQKAIAEAREQEAIADKARANRHARAM
EYVGASAMYEGSQLYDEPCREQCKKRARQERKTTPFSNLRQTSEDNINEL
IWLQKQSHLQEARKNFEAAQKTLHTKKAERDQLAREHDKAETAASAALIA
LGDKVKQAEVDAFDSLLEFKQACADTPCNSSRMNTLWAVCDVIDELVDGP
SLQQSKSAGRRRTKRRRSSR*
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mRNA from alignment at E-siliculosus-1a_F_contig11275:599..1882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11275.848.1 ID=mRNA_E-siliculosus-1a_F_contig11275.848.1|Name=mRNA_E-siliculosus-1a_F_contig11275.848.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1284bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11275:599..1882+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGACGAGGAACTGTTGGTGGCAATTCTCGTCCAGGGATACGAAAA
CGCGGTGAAGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGCACCACCGCA
CGACGACACTCGACGACGACGTCCTCAACGCGATCATGGAGGAACAGGAA
GCCTCTACCGCCATCCTCACCGCCAGGGCCAAAGCATACGTGCAGCAAGT
CGCCACCGCATCGGAAAATCTCCAGAAGGCGATCGCCGAGGCCCGCGAGC
AGGAGGCCATCGCGGACAAGGCGCGTGCCAACAGGCATGCCCGCGCCATG
GAGTACGTCGGTGCGTCCGCCATGTATGAGGGGTCCCAGCTTTATGACGA
GCCCTGCCGGGAGCAGTGCAAGAAGCGGGCCAGGCAGGAGCGGAAGACGA
CGCCCTTCAGCAACTTACGGCAGACCTCGGAGGATAACATCAATGAGTTA
ATTTGGCTCCAGAAGCAGTCGCACCTGCAGGAGGCCAGGAAAAACTTCGA
AGCAGCACAGAAGACCCTCCACACGAAGAAGGCGGAGCGGGACCAGCTCG
CCCGCGAGCACGACAAGGCGGAGACAGCGGCATCAGCAGCGCTAATCGCG
CTCGGAGATAAAGTAAAGCAGGCCGAGGTGGATGCCTTCGACTCCCTGCT
CGAGTTCAAACAGGCCTGCGCCGACACCCCCTGCAACTCGTCGCGGATGA
ACACCCTGTGGGCGGTGTGTGACGTCATCGACGAGCTGGTGGACGGGCCC
TCCCTGCAGGTGATTGTTCCTCGCGTGCTGGTTGGTGCTTGGCCTTCTGT
GTGTAGTCGCTACCTCTTGTCTTCCTACGCATTAACAACTATTCGTGTAC
ATAGATAGATAGGCCTTTCTTGTCTTCATGGTCAAGTTTCGTTTCTTGTA
CCCCTGTAGAACCAACGTGACTCTTGTTTAAGCTTGCGAGAACCATGCCA
TAGGAAATAGTACAGCGCGTTTGGCAAGCCGTGCTGTCTGCTACTCTTCG
TCTCACACTTTGGCGCTGGTTGCTTTGGGTCGCCGCTGCAATAGAGTCAG
TCGTGTTCTTCTTGTGCATGTCGTACCCCTTCATGCACTCTTCTCCAGCA
TCGCACCTTCGCTCATATCACCCAACGTGACGCTGAACTCGTTCGCTCTG
TCATACATGTTACTATTCAATGTTATTCACCAGGCTGCTTCTCCTTGCCC
GCCCCCCCCCCAACTGCTTTTCTGCTACAGCAGAGCAAGAGTGCGGGTCG
CAGGAGGACCAAGCGGAGGAGGTCCTCCCGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11275:599..1882+

>mRNA_E-siliculosus-1a_F_contig11275.848.1 ID=mRNA_E-siliculosus-1a_F_contig11275.848.1|Name=mRNA_E-siliculosus-1a_F_contig11275.848.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11275:599..1882+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGGACGAGGAACTGTTGGTGGCAATTCTCGTCCAGGGATACGAAAA
CGCGGTGAAGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGCACCACCGCA
CGACGACACTCGACGACGACGTCCTCAACGCGATCATGGAGGAACAGGAA
GCCTCTACCGCCATCCTCACCGCCAGGGCCAAAGCATACGTGCAGCAAGT
CGCCACCGCATCGGAAAATCTCCAGAAGGCGATCGCCGAGGCCCGCGAGC
AGGAGGCCATCGCGGACAAGGCGCGTGCCAACAGGCATGCCCGCGCCATG
GAGTACGTCGGTGCGTCCGCCATGTATGAGGGGTCCCAGCTTTATGACGA
GCCCTGCCGGGAGCAGTGCAAGAAGCGGGCCAGGCAGGAGCGGAAGACGA
CGCCCTTCAGCAACTTACGGCAGACCTCGGAGGATAACATCAATGAGTTA
ATTTGGCTCCAGAAGCAGTCGCACCTGCAGGAGGCCAGGAAAAACTTCGA
AGCAGCACAGAAGACCCTCCACACGAAGAAGGCGGAGCGGGACCAGCTCG
CCCGCGAGCACGACAAGGCGGAGACAGCGGCATCAGCAGCGCTAATCGCG
CTCGGAGATAAAGTAAAGCAGGCCGAGGTGGATGCCTTCGACTCCCTGCT
CGAGTTCAAACAGGCCTGCGCCGACACCCCCTGCAACTCGTCGCGGATGA
ACACCCTGTGGGCGGTGTGTGACGTCATCGACGAGCTGGTGGACGGGCCC
TCCCTGCAGCAGGCGGACGAGGAACTGTTGGTGGCAATTCTCGTCCAGGG
ATACGAAAACGCGGTGAAGGACAGCCCGTGCCCTCAGGCGGAGCAGCAGC
ACCACCGCACGACGACACTCGACGACGACGTCCTCAACGCGATCATGGAG
GAACAGGAAGCCTCTACCGCCATCCTCACCGCCAGGGCCAAAGCATACGT
GCAGCAAGTCGCCACCGCATCGGAAAATCTCCAGAAGGCGATCGCCGAGG
CCCGCGAGCAGGAGGCCATCGCGGACAAGGCGCGTGCCAACAGGCATGCC
CGCGCCATGGAGTACGTCGGTGCGTCCGCCATGTATGAGGGGTCCCAGCT
TTATGACGAGCCCTGCCGGGAGCAGTGCAAGAAGCGGGCCAGGCAGGAGC
GGAAGACGACGCCCTTCAGCAACTTACGGCAGACCTCGGAGGATAACATC
AATGAGTTAATTTGGCTCCAGAAGCAGTCGCACCTGCAGGAGGCCAGGAA
AAACTTCGAAGCAGCACAGAAGACCCTCCACACGAAGAAGGCGGAGCGGG
ACCAGCTCGCCCGCGAGCACGACAAGGCGGAGACAGCGGCATCAGCAGCG
CTAATCGCGCTCGGAGATAAAGTAAAGCAGGCCGAGGTGGATGCCTTCGA
CTCCCTGCTCGAGTTCAAACAGGCCTGCGCCGACACCCCCTGCAACTCGT
CGCGGATGAACACCCTGTGGGCGGTGTGTGACGTCATCGACGAGCTGGTG
GACGGGCCCTCCCTGCAGCAGAGCAAGAGTGCGGGTCGCAGGAGGACCAA
GCGGAGGAGGTCCTCCCGCTGACAGAGCAAGAGTGCGGGTCGCAGGAGGA
CCAAGCGGAGGAGGTCCTCCCGCTGA
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