mRNA_E-siliculosus-1a_F_contig11265.844.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11265.844.1
Unique NamemRNA_E-siliculosus-1a_F_contig11265.844.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11265.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11265contigE-siliculosus-1a_F_contig11265:189..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size264
Model size267
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927634.867869-CDS-E-siliculosus-1a_F_contig11265:189..2281622927634.867869-CDS-E-siliculosus-1a_F_contig11265:189..228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11265 190..228 -
1696318619.1744094-CDS-E-siliculosus-1a_F_contig11265:189..2281696318619.1744094-CDS-E-siliculosus-1a_F_contig11265:189..228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11265 190..228 -
1622927634.8789184-CDS-E-siliculosus-1a_F_contig11265:492..7171622927634.8789184-CDS-E-siliculosus-1a_F_contig11265:492..717Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11265 493..717 -
1696318619.192454-CDS-E-siliculosus-1a_F_contig11265:492..7171696318619.192454-CDS-E-siliculosus-1a_F_contig11265:492..717Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11265 493..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11265.844.1prot_E-siliculosus-1a_F_contig11265.844.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11265 190..717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11265.844.1

>prot_E-siliculosus-1a_F_contig11265.844.1 ID=prot_E-siliculosus-1a_F_contig11265.844.1|Name=mRNA_E-siliculosus-1a_F_contig11265.844.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp
AVQPADGGGRATGAGKGGILSGSRPAAAASGGGSAELMPPPPPAAKPEPK
EANGSSNGSAAASSNGSRKSSGSRKVGKRQGGSSNKSG
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mRNA from alignment at E-siliculosus-1a_F_contig11265:189..717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11265.844.1 ID=mRNA_E-siliculosus-1a_F_contig11265.844.1|Name=mRNA_E-siliculosus-1a_F_contig11265.844.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=529bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11265:189..717- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGTACAACCTGCTGACGGCGGCGGCAGGGCCACGGGTGCAGGAAAGGG
GGGCATCTTGAGCGGCAGCAGGCCGGCGGCCGCTGCTAGCGGTGGCGGCT
CCGCGGAGCTGATGCCGCCACCGCCGCCGGCGGCGAAGCCGGAGCCGAAG
GAGGCTAACGGGAGCAGCAACGGGAGTGCCGCCGCGAGCAGCAATGGGAG
CAGGAAGAGCTCTGGCTCGCGCAAGGTGTGTGTGTGTGTGTGTGTGTGTT
GCCGGAAACATGTATGTATCCGTCCTGGTTCGTTGTATTGGTCTAAGTTG
TATGGTGCCCTACGGCAGGCGAGACTTGTCGTTTTTTGCAGCGTACAGCC
GCGAAAGTGGACTCAAGTGTGGAAAGTGGATTGAAGCGTCCTCCGAAATG
CACATGCAACACCGCTCGTTTTGCTTGCTTTCCACCTTCGCCTTCGCGTG
AACTCCCCCGGCCCCGGCACGACCCTTCCCTTCCCCCAGGTGGGTAAGAG
ACAGGGGGGCTCTAGTAACAAGAGTGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11265:189..717-

>mRNA_E-siliculosus-1a_F_contig11265.844.1 ID=mRNA_E-siliculosus-1a_F_contig11265.844.1|Name=mRNA_E-siliculosus-1a_F_contig11265.844.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11265:189..717- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGGTACAACCTGCTGACGGCGGCGGCAGGGCCACGGGTGCAGGAAAGGG
GGGCATCTTGAGCGGCAGCAGGCCGGCGGCCGCTGCTAGCGGTGGCGGCT
CCGCGGAGCTGATGCCGCCACCGCCGCCGGCGGCGAAGCCGGAGCCGAAG
GAGGCTAACGGGAGCAGCAACGGGAGTGCCGCCGCGAGCAGCAATGGGAG
CAGGAAGAGCTCTGGCTCGCGCAAGGCGGTACAACCTGCTGACGGCGGCG
GCAGGGCCACGGGTGCAGGAAAGGGGGGCATCTTGAGCGGCAGCAGGCCG
GCGGCCGCTGCTAGCGGTGGCGGCTCCGCGGAGCTGATGCCGCCACCGCC
GCCGGCGGCGAAGCCGGAGCCGAAGGAGGCTAACGGGAGCAGCAACGGGA
GTGCCGCCGCGAGCAGCAATGGGAGCAGGAAGAGCTCTGGCTCGCGCAAG
GTGGGTAAGAGACAGGGGGGCTCTAGTAACAAGAGTGGGGTGGGTAAGAG
ACAGGGGGGCTCTAGTAACAAGAGTGGG
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