mRNA_E-siliculosus-1a_F_contig1126.839.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1126.839.1
Unique NamemRNA_E-siliculosus-1a_F_contig1126.839.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1126.839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1126contigE-siliculosus-1a_F_contig1126:24170..24509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size339
Model size340
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927633.9443123-UTR-E-siliculosus-1a_F_contig1126:24169..241701622927633.9443123-UTR-E-siliculosus-1a_F_contig1126:24169..24170Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1126 24170..24170 +
1696318618.6840599-UTR-E-siliculosus-1a_F_contig1126:24169..241701696318618.6840599-UTR-E-siliculosus-1a_F_contig1126:24169..24170Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1126 24170..24170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927633.9609559-CDS-E-siliculosus-1a_F_contig1126:24170..245091622927633.9609559-CDS-E-siliculosus-1a_F_contig1126:24170..24509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1126 24171..24509 +
1696318618.6915855-CDS-E-siliculosus-1a_F_contig1126:24170..245091696318618.6915855-CDS-E-siliculosus-1a_F_contig1126:24170..24509Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1126 24171..24509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1126.839.1prot_E-siliculosus-1a_F_contig1126.839.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1126 24171..24509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1126.839.1

>prot_E-siliculosus-1a_F_contig1126.839.1 ID=prot_E-siliculosus-1a_F_contig1126.839.1|Name=mRNA_E-siliculosus-1a_F_contig1126.839.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=113bp
MCGEISDGLLQMKVDLTSPPPALREPLHVQVATFLVALGFAPATMVLGPS
GERGLVRTLLLRMRAAHAETSCCGLGVKMVCLLCNAGKRFWCDCFFFGLV
GEADRTRFDLDRG
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mRNA from alignment at E-siliculosus-1a_F_contig1126:24170..24509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1126.839.1 ID=mRNA_E-siliculosus-1a_F_contig1126.839.1|Name=mRNA_E-siliculosus-1a_F_contig1126.839.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=340bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1126:24170..24509+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AATGTGCGGCGAGATTAGTGATGGATTGCTACAGATGAAGGTTGACTTGA
CCTCCCCCCCCCCTGCCCTCCGCGAGCCACTTCACGTTCAAGTTGCGACT
TTTCTGGTGGCCCTAGGATTTGCACCGGCAACGATGGTGTTGGGACCGAG
TGGTGAACGGGGTCTGGTCAGAACATTATTGTTGCGTATGCGAGCGGCTC
ACGCGGAGACAAGTTGCTGTGGGCTGGGTGTGAAAATGGTGTGTTTATTG
TGCAACGCCGGAAAGCGATTTTGGTGTGATTGTTTTTTCTTTGGATTGGT
TGGCGAGGCCGATCGCACGCGATTCGATTTGGACCGGGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1126:24170..24509+

>mRNA_E-siliculosus-1a_F_contig1126.839.1 ID=mRNA_E-siliculosus-1a_F_contig1126.839.1|Name=mRNA_E-siliculosus-1a_F_contig1126.839.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1126:24170..24509+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCGGCGAGATTAGTGATGGATTGCTACAGATGAAGGTTGACTTGAC
CTCCCCCCCCCCTGCCCTCCGCGAGCCACTTCACGTTCAAGTTGCGACTT
TTCTGGTGGCCCTAGGATTTGCACCGGCAACGATGGTGTTGGGACCGAGT
GGTGAACGGGGTCTGGTCAGAACATTATTGTTGCGTATGCGAGCGGCTCA
CGCGGAGACAAGTTGCTGTGGGCTGGGTGTGAAAATGGTGTGTTTATTGT
GCAACGCCGGAAAGCGATTTTGGTGTGATTGTTTTTTCTTTGGATTGGTT
GGCGAGGCCGATCGCACGCGATTCGATTTGGACCGGGGCATGTGCGGCGA
GATTAGTGATGGATTGCTACAGATGAAGGTTGACTTGACCTCCCCCCCCC
CTGCCCTCCGCGAGCCACTTCACGTTCAAGTTGCGACTTTTCTGGTGGCC
CTAGGATTTGCACCGGCAACGATGGTGTTGGGACCGAGTGGTGAACGGGG
TCTGGTCAGAACATTATTGTTGCGTATGCGAGCGGCTCACGCGGAGACAA
GTTGCTGTGGGCTGGGTGTGAAAATGGTGTGTTTATTGTGCAACGCCGGA
AAGCGATTTTGGTGTGATTGTTTTTTCTTTGGATTGGTTGGCGAGGCCGA
TCGCACGCGATTCGATTTGGACCGGGGC
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