mRNA_E-siliculosus-1a_F_contig1126.835.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: D8LRC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRC7_ECTSI) HSP 1 Score: 612 bits (1578), Expect = 7.850e-216 Identity = 361/444 (81.31%), Postives = 367/444 (82.66%), Query Frame = 2
Query: 212 MFSNPQELRERAMRAQQGKKDDTDSLESKPSAEEASXXXXXXXXXXXXXXXDAGVEEQQMPAAAGGKGGDEGEASPPLMTPEQVEEFFKNTVVRLTSPEEREDIKSKAREQTVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNGYTRTTAAGDRDAHQRVEDFTHTC------------------QRTFIEVLRDMEPAEEETEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHMHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQDGGHDXXXXXXXXXXXXXXXXXXXXXXXXXXQPGTAAAQGQSGSRDQGS 1489
MFSNPQELRERAMRAQQGKKDDT SLESKP XXXXXXXXXXXXXXX DEGEASPPLMTPEQVEEFFK+T+ RLTSPEEREDIKSK VTVDVRIPALLIKIQHEELEKMGVSK+DGQQALNGYTRTTAAGD++AHQRVEDFTHT QRTFIEVLRDMEPAEEETEAKLTP QIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMH+HQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQDGGHD QPGTAAAQGQSGSRDQGS
Sbjct: 1 MFSNPQELRERAMRAQQGKKDDTTSLESKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DEGEASPPLMTPEQVEEFFKSTMARLTSPEEREDIKSK-----VTVDVRIPALLIKIQHEELEKMGVSKKDGQQALNGYTRTTAAGDKEAHQRVEDFTHTVYATFTAVARSVTAGDRPDQRTFIEVLRDMEPAEEETEAKLTPAQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHVHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQDGGHDHGHAHG--------------------QPGTAAAQGQSGSRDQGS 417
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A835ZBF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBF2_9STRA) HSP 1 Score: 161 bits (408), Expect = 6.280e-41 Identity = 112/333 (33.63%), Postives = 167/333 (50.15%), Query Frame = 2
Query: 368 AGVEEQQMPAAAGGK--GGDEGEASPPLMTPEQVEEFFKNTVVRLTSPEEREDIKSKAREQTVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNGYTRTTAAGDRDAHQRVEDFTHTCQRTFIEVLRDMEPAEEE--TEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTKRMHMHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQDGGH 1354
A EE+ PA G GD E S M+ E + FF + L S E RE + + ++ R ALL++ Q L+ MGV +E GQQALN GD++ ++ +F C +T+I + P+ + TE +T ++MEFF +C +L+ PETK L + F ETQ PP++ I+ MQR ML LG PDHG++CLN D + Q+F A A QEA++G ++ M ++ ++ E +A+ + KRV+ Q A A+ +L R+AY+K +P EQ D+AKL ML + GGH
Sbjct: 18 AKAEEEGAPAGEGSGIVAGDSVEESDAAMSREDMMSFFDKAIEALKSDELREQVAASVNKEN-----RPDALLMEQQLTMLDDMGVGREKGQQALNEIP-LKHRGDKELVDKMREFESICNQTYITIFTQGRPSADSLRTEGDMTEDEVMEFFNSCISLMGTPETKAKLAQRFAETQEPPNDYIIEMQRDMLACLGIEPDHGISCLNKHVTS--GDADIASGAQRFAMSAQRACQEAVMGTDKFEAHMAQQHEAMQRQRRLVAECAAMTPKEQQAFMKRVATQQVSIARAMASLADDHARIAYVKQLPAAEQDDLAKLNMLMG----GRSGGH 338
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A8J2SUF4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUF4_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.220e-21 Identity = 80/301 (26.58%), Postives = 148/301 (49.17%), Query Frame = 2
Query: 446 MTPEQVEEFFKNTVVRLTSPEEREDIKSKAREQTVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNGYTRTTAAGDRDAHQRVEDFTHTCQRTFIEVLRDMEPAEEETEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMRCASMARQEAMLGKEELTK--RMHMHQATAMKEHKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQ 1342
MT +++ EFF++ + + S E R ++ + ++ R A L++ Q + + M + ++ G + L G R+ A D + E+F T Q+ FI+ L ++P++ + I+EFF+AC+T + LP T+E L ++F T+ PP+E I+ +Q+ ML TLGF + LN +DF +D +L +Q + A A + A + + M Q + + K EL+ L + +A K++ + + V + +R+ Y+ + EE+ D K ++L AQ
Sbjct: 126 MTRDELAEFFRDGIAMMRSDETRRALRDRNAKE------RPGAQLVERQQLKFDAMNIDRKAGCK-LAGTCRSDYADDEELKGLHEEFMATAQQEFIDALESLKPSKLKRSGVFPKKSILEFFDACNTKMQLPSTRELLAEQFKRTKQPPNELIIKLQKDMLETLGFEREWACGKLNRIGQDFGEDRELVQGMQAWAAMAQQACRRAQADGDPSLRPDSKEMRQIVEL-QAKARQELATLSSSDKAAFLKKLGKK-----VEVFNRLSAPDRVRYVMKLSEEERRDFVKAQVLMMEQGFAQ 413
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A7S1RNK7_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RNK7_ALECA) HSP 1 Score: 102 bits (255), Expect = 2.100e-20 Identity = 66/212 (31.13%), Postives = 104/212 (49.06%), Query Frame = 2
Query: 455 EQVEEFFKNTVVRLTSPEEREDIKSKAREQTVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNGYTRTTAAGDRDAHQRVEDFTHTCQRTFIEVLRDMEPAEEETEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQFMR-----CASMARQEAMLG 1075
E + F N + ++ S E RE +K R LI++Q E + +GV ++ G L+ QR DF T QRTFI+ + D +PA+ E + + ++EFF+AC+T + LPET++ + TQ P++ I+ +QR ML GF +HG A L+ DFP D++L R + + + C + RQ M G
Sbjct: 20 EVITAFLTNGIKKMRSEETREMLKGHERPGQK---------LIEVQRSEWDPLGVDRDMGCGYLDKLEEHYPGNTALIMQR-NDFIFTAQRTFIQAMEDKKPAQMERKKPMPRATMIEFFDACNTKMDLPETRQRFLQHLESTQQVPNQLIIDLQRDMLEVFGFEREHGCAMLSNIGTDFPKDQELHQRFEMWRKKAHSVCMQVVRQHQMKG 221
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A7S2GNJ1_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GNJ1_9DINO) HSP 1 Score: 94.0 bits (232), Expect = 1.870e-17 Identity = 74/280 (26.43%), Postives = 132/280 (47.14%), Query Frame = 2
Query: 521 IKSKAREQTVTVDVRIPALLIKIQHEELEKMGVSKEDGQQALNGYTRTTAAGDRDAHQRVEDFTHTCQRTFIEVLRDMEPAEEETEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQQF-----MRCASMARQEAMLGKEELTKRMHMHQATAMKE-HKMAMELSALDEAGRADLTKRVSEMQRRHALAVMTLTTQEERLAYIKGIPTEEQWDIAKLKMLTRHLKMAQ 1342
+K +A + + + + LI++Q E + M + ++ G Q L+ D D +F T QR+F++ + D P + E + + I+EFF+AC+T + LPET+E L + TQ P++ I+ +QR +L GF +HG A L+ DFP D++L R + M C +Q + G ++ K + T + K ELS++ R +L R + + V E + A++K + E+ + AK ++L ++ Q
Sbjct: 13 MKDEATREMLKCEAKPGQKLIELQRAEWDPMNIDRDLGCQFLDKLEEHVPGKD-DLIALRSEFIITAQRSFLQAMEDKRPTKLERKKPMPRETIIEFFDACNTKMDLPETREKLVQTLESTQQVPNQVIIDLQRELLEVFGFEREHGCAMLSNIGSDFPQDQELHQRFAMWRNKAHMTCMQAVKQHQVNGG-QMPKHPELFSGTNPELIQKAKEELSSMTPEQRKELFDRFQKK-----VEVYMNLPPEGKAAHMKKLGDAEKLEYAKAQILMVNMMQLQ 285
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A813HHN4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HHN4_POLGL) HSP 1 Score: 86.3 bits (212), Expect = 7.460e-15 Identity = 48/152 (31.58%), Postives = 83/152 (54.61%), Query Frame = 2
Query: 572 ALLIKIQHEELEKMGVSKEDGQQALNGYTRTTAAGDRDAHQRVEDFTHTCQRTFIEVLRDMEPAEEETEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAFSKDFPDDEKLQMRLQ 1027
A L+ +Q + +G ++ G AL+ + G++ Q DF +T RT+++ + D PAE E + + +EFF+AC+T + +PET + L + T P+E I+ +Q+ ML LGF +H A LN +DFP+D++L + +
Sbjct: 22 AQLVVLQRAGWKTLGFDEDLGCAALDKVDGSDP-GNQQLLQLRADFVYTAMRTYLQAVVDRRPAELECKKPMPREAFIEFFDACNTKMDMPETIQILAEHMAATNKVPNELIINIQKDMLEDLGFERNHACAMLNRIPQDFPNDQELHQKFE 172
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A6H5JFH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH4_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 3.310e-10 Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 2
Query: 212 MFSNPQELRERAMRAQQGKKDDTDSLESKPSAEEAS 319
MFSNPQELRERAMRAQQGKKDDT SLESKPSAEEAS
Sbjct: 1 MFSNPQELRERAMRAQQGKKDDTTSLESKPSAEEAS 36
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Match: A0A812X6Q3_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X6Q3_SYMPI) HSP 1 Score: 55.8 bits (133), Expect = 3.300e-5 Identity = 28/96 (29.17%), Postives = 53/96 (55.21%), Query Frame = 2
Query: 731 FIEVLRDMEPAEEETEAKLTPGQIMEFFEACDTLLALPETKESLRKEFLETQVPPDETIVGMQRSMLRTLGFSPDHGVACLNAF--SKDFPDDEKL 1012
+++ L+D P + E K++ ++EF EAC+ + LPE +E LR++ ET P+ + ++ LGF +G +C F S++F D+++
Sbjct: 5 YLKCLQDRRPRVLQKEGKMSRDVVLEFLEACNVKMDLPEVQEKLRRKITETGALPETVANEVHDEVMELLGFEVAYGHSCFAEFGASQEFASDKEV 100 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1126.835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1126.835.1 >prot_E-siliculosus-1a_F_contig1126.835.1 ID=prot_E-siliculosus-1a_F_contig1126.835.1|Name=mRNA_E-siliculosus-1a_F_contig1126.835.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=427bp MFSNPQELRERAMRAQQGKKDDTDSLESKPSAEEASADEGAAAEAAAAPAback to top mRNA from alignment at E-siliculosus-1a_F_contig1126:4258..12635- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1126.835.1 ID=mRNA_E-siliculosus-1a_F_contig1126.835.1|Name=mRNA_E-siliculosus-1a_F_contig1126.835.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1126:4258..12635- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1126:4258..12635- >mRNA_E-siliculosus-1a_F_contig1126.835.1 ID=mRNA_E-siliculosus-1a_F_contig1126.835.1|Name=mRNA_E-siliculosus-1a_F_contig1126.835.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2562bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1126:4258..12635- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |