mRNA_E-siliculosus-1a_F_contig1125.833.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1125.833.1
Unique NamemRNA_E-siliculosus-1a_F_contig1125.833.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.833.1 vs. uniprot
Match: A0A6H5KSZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSZ4_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 6.040e-43
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 2 
Query:    8 GSNLFRVQPTHPPLAGGPQERFVDQRRYANISRYIRCARRLEDANLVPVAVHTAYQDPNAPVLALFAVKTIEEDTELLRYR 250
            GSNLFRVQPTHPPLAGG QERFVDQRRYANISRYIRCA+RLEDANLVPVAVHTAYQDPNAPVLALFAVKTIE+DTELLRYR
Sbjct:  493 GSNLFRVQPTHPPLAGGLQERFVDQRRYANISRYIRCAKRLEDANLVPVAVHTAYQDPNAPVLALFAVKTIEKDTELLRYR 573
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1125.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KSZ4_9PHAE6.040e-4396.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1125contigE-siliculosus-1a_F_contig1125:32653..33851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size270
Model size478
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1125.833.1prot_E-siliculosus-1a_F_contig1125.833.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1125 32859..33851 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927632.1845577-UTR-E-siliculosus-1a_F_contig1125:32652..328581622927632.1845577-UTR-E-siliculosus-1a_F_contig1125:32652..32858Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1125 32653..32858 -
1696318618.2411246-UTR-E-siliculosus-1a_F_contig1125:32652..328581696318618.2411246-UTR-E-siliculosus-1a_F_contig1125:32652..32858Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1125 32653..32858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927632.1971152-CDS-E-siliculosus-1a_F_contig1125:32858..330231622927632.1971152-CDS-E-siliculosus-1a_F_contig1125:32858..33023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 32859..33023 -
1696318618.2486749-CDS-E-siliculosus-1a_F_contig1125:32858..330231696318618.2486749-CDS-E-siliculosus-1a_F_contig1125:32858..33023Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 32859..33023 -
1622927632.2139363-CDS-E-siliculosus-1a_F_contig1125:33746..338511622927632.2139363-CDS-E-siliculosus-1a_F_contig1125:33746..33851Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 33747..33851 -
1696318618.259062-CDS-E-siliculosus-1a_F_contig1125:33746..338511696318618.259062-CDS-E-siliculosus-1a_F_contig1125:33746..33851Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 33747..33851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1125.833.1

>prot_E-siliculosus-1a_F_contig1125.833.1 ID=prot_E-siliculosus-1a_F_contig1125.833.1|Name=mRNA_E-siliculosus-1a_F_contig1125.833.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=90bp
RGWIEFVPRPADASSARRGSAGEVCGSATLRQHLQVHPVRQEAGGCQPCA
SGRSHGVSRPERACPGSFCRQNHRRGHRAPSVSMRTGEP*
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mRNA from alignment at E-siliculosus-1a_F_contig1125:32653..33851-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1125.833.1 ID=mRNA_E-siliculosus-1a_F_contig1125.833.1|Name=mRNA_E-siliculosus-1a_F_contig1125.833.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1199bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1125:32653..33851- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGGGTGGATCGAATTTGTTCCGCGTCCAGCCGACGCATCCTCCGCTCG
CCGGGGGTCCGCAGGAGAGGTTTGTGGATCAGCGACGCTACGCCAACATC
TCCAGGTGTGGTCCTTGTACGCTAGTGTGGACGAGAATGGAGTGTCTTTG
GGGCGTGTGCCGTGTGGCCAGTGTCCTGCCTCTGAGTTCAAATTTCCGGT
GCTCCGTATCCCACACGGCTTTGTTGTATAGAGAGGGTCAGGGCCGCCGA
GAGTGCCAAGTGTTCGTTATCGCTGCCTGCCGAGAGGCGTATTGGTACTC
TCGTGGGCACAAGTAATCAAGATGGGTGTAGAATACCCCCAAGCGGTGTG
TGATGGACTGTGATATGTATGTTCGGTAGACCGAGGTAGAGTAGGCAGAG
GAAGTCGGGAGGGGGGTCAGCTCGCCTTCGACTGTGCCCCCGCTCATCAT
TTCACTGGCGCTTTTTTCAACTGTCACCCCCCGCGTGTTGCTACTGATGT
CGTTTTCCGCTCGTGATGTGTCTATCCTGTCAATAAGCTCTTGTTTTTCC
ACCGCATCCCGTCCCATCTCATCCCATTCCATCGTAACCCATCCTGTCTC
ATGTCGTAGGAGTGTGGTATCCGCCAGTGTTTTCGTGTTCGTGGGTATTT
CTTACTCCAATATATCGACCGCATTGTGACAGGCAACCGGTGAAACAGTA
CCTACAGTAGTGGATGATGACGCCTGTTTTTTTTGTGAGTATTAGGTGTT
GCATTGTTTGTCGTTTTTGTGTCGCAACCACGTGACTGATTGTCCGTGTC
TGGTTTGGTTTCGCACACAACGAAACAGGTACATCCGGTGCGCCAGGAGG
CTGGAGGATGCCAACCTTGTGCCAGTGGCCGTTCACACGGCGTATCAAGA
CCCGAACGCGCCTGTCCTGGCTCTTTTTGCCGTCAAAACCATCGAAGAGG
ACACCGAGCTCCTTCGGTATCGATGAGGACAGGCGAACCGTAGATGATGC
CGGAGACAGATGGTGACCACACGATGCCCAACAGGAAGGGGATACAATAT
GTGGCAGAAGAACATGTACACGTATTGATCAGCACCAGAATGTTGGAGGT
GATTCTTGGCGGTTGACCTGCGTAGTAGTCAGTGACTGATTCAAGAAACA
CAATGAGTACTCTCCCCCCTCGAAATAGATTAATATGGATTGACACGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1125:32653..33851-

>mRNA_E-siliculosus-1a_F_contig1125.833.1 ID=mRNA_E-siliculosus-1a_F_contig1125.833.1|Name=mRNA_E-siliculosus-1a_F_contig1125.833.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1125:32653..33851- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGGGGTGGATCGAATTTGTTCCGCGTCCAGCCGACGCATCCTCCGCTCG
CCGGGGGTCCGCAGGAGAGGTTTGTGGATCAGCGACGCTACGCCAACATC
TCCAGCGGGGGTGGATCGAATTTGTTCCGCGTCCAGCCGACGCATCCTCC
GCTCGCCGGGGGTCCGCAGGAGAGGTTTGTGGATCAGCGACGCTACGCCA
ACATCTCCAGGTACATCCGGTGCGCCAGGAGGCTGGAGGATGCCAACCTT
GTGCCAGTGGCCGTTCACACGGCGTATCAAGACCCGAACGCGCCTGTCCT
GGCTCTTTTTGCCGTCAAAACCATCGAAGAGGACACCGAGCTCCTTCGGT
ATCGATGAGGACAGGCGAACCGTAGGTACATCCGGTGCGCCAGGAGGCTG
GAGGATGCCAACCTTGTGCCAGTGGCCGTTCACACGGCGTATCAAGACCC
GAACGCGCCTGTCCTGGCTCTTTTTGCCGTCAAAACCATCGAAGAGGACA
CCGAGCTCCTTCGGTATCGATGAGGACAGGCGAACCGTAG
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