|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1124.826.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI) HSP 1 Score: 216 bits (549), Expect = 2.480e-68 Identity = 116/155 (74.84%), Postives = 119/155 (76.77%), Query Frame = 1
Query: 313 MSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEAKHGSGFTALHVAAMRNDPNTIRVLLNMKVDVNSTNMSGATPLSCAMGGAGGPNGECATLLRASGGLVRLVQDTINPGSILDVPLRRPRRAMDDRADALGRMVYTGQF 777
MSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIE KH MSGATPLSCAMGGAGGP+GECATLLRASGGLVRLV+DTI+ GSILDV LRRPRRAMDDRADALGRMVYTGQF
Sbjct: 1 MSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGKH---------------------------------MSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDVSLRRPRRAMDDRADALGRMVYTGQF 122
BLAST of mRNA_E-siliculosus-1a_F_contig1124.826.1 vs. uniprot
Match: A0A7S2XV99_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV99_9STRA) HSP 1 Score: 138 bits (348), Expect = 7.660e-37 Identity = 80/194 (41.24%), Postives = 114/194 (58.76%), Query Frame = 1
Query: 208 IARDGCLSQHENDRHLV--RDPQLYLRWTPIYPHPLPMSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEAKHGSGFTALHVAAMRNDPNTIRVLLNMKVDVNSTNMSGATPLSCAMGGAGGPNGECATLLRASGGLVRLVQ-DTINPGSILDVPLRRP-RRAMDDRADALGRMVYTGQF 777
IARD + + D + RD L ++W P+ HPLP+S E F N+R +RRL L P R L AAA GRAWC+EE + +GCPIE +G G+ LH+AA +RVLLN+ VD N + M+G PL+ A+ + +CATL+R +GG+++ D + ILDV +R+P R +D R D L + Y +
Sbjct: 18 IARDESIIFQKEDAEIEKNRDHMLLVKWRPLLRHPLPVSEEKFANDRLMRRLNGLHPSKRALLAAAEGRAWCIEECYIKGCPIEVTNGEGYKPLHLAASLGHVEAVRVLLNIGVDPNDSTMTGFLPLALAVAS---NHTQCATLIREAGGVMQAPDPDQVQLLRILDVDIRQPPSRVIDLRCDVLKKPRYPWEL 208
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 780 |
| Model size | 780 |
| Exons | 5 |
| Ec32 ortholog | Ec-11_001750.1 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1124.826.1 >prot_E-siliculosus-1a_F_contig1124.826.1 ID=prot_E-siliculosus-1a_F_contig1124.826.1|Name=mRNA_E-siliculosus-1a_F_contig1124.826.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=260bp
MPLPAGKNDTRTAIEDGLRRQPNQAAITEATLTPFQKALADSSRRRELTA
KREKALQLRQSSKVDVQKLIARDGCLSQHENDRHLVRDPQLYLRWTPIYP
HPLPMSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPI
EAKHGSGFTALHVAAMRNDPNTIRVLLNMKVDVNSTNMSGATPLSCAMGG
AGGPNGECATLLRASGGLVRLVQDTINPGSILDVPLRRPRRAMDDRADAL
GRMVYTGQF* back to topmRNA from alignment at E-siliculosus-1a_F_contig1124:3861..6951+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1124.826.1 ID=mRNA_E-siliculosus-1a_F_contig1124.826.1|Name=mRNA_E-siliculosus-1a_F_contig1124.826.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3091bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1124:3861..6951+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCCTCCCTGCAGGAAAAAATGATACACGGACTGCAATCGAAGATGG
CCTACGTCGACAACCCAACCAAGCAGCAATTACCGAGGCCACCCTGACGC
CCTTCCAGAAAGCACTAGCCGACTCGTCGAGGCGGCGAGAACTGACCGCG
AAGAGAGAGAAAGCCCTACAGCTTAGGCAGAGCTCGAAGGTGGACCGGGA
GCTTCAGCGGGCTGGTGTATCTTTCCTCATTGTTCACCCGCAATCCAACA
GCCTAGAATCTACTGTACAACTGTGGGAGTCTACTGACTGTAGTCTACAA
ACCTTGCTGTTCCAACAGTCACGACTTTTTCTCCTGTCCCAGCTGTTCTT
GGCACCATGTTTGCACCGTTCGGTGGAAACTTGGCGCACAAGCCCAAGGG
TAGCACAACAGGGATTCTCTATCTTTCGTCCAAACTTGGGTACGTTGAGA
CGGAAGGGGTGCAACTCAGCCCTTGCCTACAGTATTTTTCTCTTTGCCAA
ACTCATTCACGACCCATGCCCTCTTCTTTTGTGCGAGTATCTTCACTTCC
ACCAGTTCTTAGAACCGCAGTTTGCCAAGAATGGAGGAGAATGATGCAAC
GGTCGGTACGGACAATGTTCGAAGATCAACCGCGGCAACGTTAGAGTTGC
CTACAGGGAATGCAGACCCCGACCCGGTTTCCCGCGCCCCACAACGCGGC
GCCGTGTGTCGCCTATCTAACATGTTTCCACCCATCTACGACCAGCCACG
TACCTCTGGCTAGGGTCCCCTCCTAACGCGATACCATGAGAACGTCACTA
CTGTACCCTCAGGTGTCTCATGCTTCGCTAGCCTTGAAACTTCGAACCCC
CGCCCAAACGCAAGTCTGACAAGTTTGAGGGATTGGATCGTGCATACCAA
TACGGTGGCCAGAACATGGGGTTGAACAACGTTTTCGGAAGGATTCGCTT
GCTTCTATGTGAAAGTGCTCACAACATGTGTCCCATGAACTGTGGAGAGA
TTGGAAGACTTCCTAGCTCGGTTCGCAGAACGAATGACCCACCCTTCACT
CAACTCGTGCATGGCGGATATTTGGGTAGGGTACCAATATATTTGGTGGG
AACCTGAGCCTGTCGCCTGTTTGTTTTTAAGACCCTCCAGGAACATGTTC
TGCCGTATTCAAGTACGACGAAACAATAGCCATGATACCCTCACCCTGCC
CTCGTTGACGTAGCACTTCTGTCTCTTCTTCCGACAACAAATGTCGAGCC
CAGGTTGATGTCCAGAAACTAATCGCTCGAGATGGCTGCCTGTCTCAGCA
CGAGAATGACCGCCACCTGGTACGAGATCCCCAGCTGTACTTACGGTGGA
CACCGATCTATCCGCATCCTCTTCCCATGAGCTACGAGGTATGGCTTTCG
TACGAACCCTTTTTGTTTTACATCACAGGCAATATCAACGCTTCGGTGTC
ATTCCAGCCGTCTCTCTGTCAACATGTTGAGCTTGTCAATCTGGCCGCAT
GTAGACACGAACAAGCTTGCCACGTATTGCCGATCAAACCACCGCCTACA
CCATTCTAACCGACGGGTTGACGTCTGCCTTTCGAACCACTGCTGAAGCT
GTTTGAAAACGAGCGGGAGCTTCGGCGTCTGGCTGTCTTGCCTCCCGAGG
ACCGAGTTCTCGCCGCTGCGGCTGCTGGTCGCGCTTGGTGCGTGGAGGAG
CTCTTCGCGCAGGGGTGCCCGATCGAGGCCAAGCACGTACGTGTTCCCTA
CTGTACAGCTAGCGTGCGCGTTTTAGAGACGCCAATTGGGGTCGAGGCTC
ATTGTCCTATTTTATCTCCGCCGTCGAGCATAGGTCATCATTTAGCGTTT
CGTGTAGGATCCTCGGTTGAGGTGTGCTTCTTTGTCGATTTTTCTTGTTT
TTCACCAAATCTGAGCCTTCGTTTCTTGAAGGTTTGCTTCTTAATCGCGG
GCGCTATCTGTATATCGTGGCGTGCTCTCCGTGTTTGTCGTTCTGGCCCT
CATGCTCGACGCGACACTAGAACGACCCCTCGATTGGCCTTTTCTTTGTA
TTGCTCGTGGGGGGGTTCCGTGCACCAGGCTTGAACGTTGGGCATGGTGC
TCTCTGAAACGGTTGAGTATGTTCTCGATGGGCGTGTGGCTAGAATATCC
CATGCTCTAGTCACCTGTCTCGAAGCGAAGACATGGTGCTGTTTCACAAA
CCTCAGCTGTATCGTTCCCTTCCTCATTGGTAGTGCCGTAGTTCTGGTCC
CGTTTTCCCTGATATCCGCCACCCGATTCTGCTGCAACTAATTCGCCGGT
CCCGTTCGCGTTCTCAGGGGTCAGGTTTCACGGCCCTTCACGTAGCGGCC
ATGAGAAACGACCCAAATACCATAAGGGTTCTTCTAAACATGAAGGTCGA
CGTCAATTCCACGAATGTGAGGGAAATGGGCGAAATGTCAATCATCGGAG
AGGTAGAGGGTAACGACTAGCTTTGTCCGCTTGGAGGCCAAGAGAGGCTA
CGCTGAGCGGGGTGTGACTGAAGCAGATATGGTATCCATCCCCTACCGTC
GGGTACGCTCTACCGACGCCAAACGATGACCAATGCAGTGCTGGGAATTC
AATTCTGCTTCCGTCCTCAGCCGGGGGCAAAAAATCTCTCAAGGCATGCT
GTCCTAAATCCGACACCAAGTTCAACATGGGCGCTTGCGGCGTCTCTAGC
ATCAGACACGGAAAATACTTTGGTGGCAATCTCGTAGAGGTTCGGCATGC
TCGGCGACTCACAATACTACTATCGTATGCTTTACGAAGCATTTATGACT
GTGATGGACCTTCCGTACTTTCAACAATACACTCCCAAACCCATCCCTTC
CCCGTCCGTTGTTATTTTGCAGATGAGCGGGGCAACCCCACTTTCATGCG
CGATGGGAGGCGCAGGAGGACCAAACGGAGAGTGCGCCACCTTGCTGCGC
GCATCCGGAGGGCTGGTTCGTCTAGTACAGGACACGATCAATCCAGGGTC
CATTCTTGACGTTCCCTTGAGACGACCACGCAGAGCAATGGATGACAGGG
CAGATGCTCTCGGGAGGATGGTCTATACCGGGCAGTTCTAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1124:3861..6951+ >mRNA_E-siliculosus-1a_F_contig1124.826.1 ID=mRNA_E-siliculosus-1a_F_contig1124.826.1|Name=mRNA_E-siliculosus-1a_F_contig1124.826.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1124:3861..6951+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCCTCCCTGCAGGAAAAAATGATACACGGACTGCAATCGAAGATGG
CCTACGTCGACAACCCAACCAAGCAGCAATTACCGAGGCCACCCTGACGC
CCTTCCAGAAAGCACTAGCCGACTCGTCGAGGCGGCGAGAACTGACCGCG
AAGAGAGAGAAAGCCCTACAGCTTAGGCAGAGCTCGAAGATGCCCCTCCC
TGCAGGAAAAAATGATACACGGACTGCAATCGAAGATGGCCTACGTCGAC
AACCCAACCAAGCAGCAATTACCGAGGCCACCCTGACGCCCTTCCAGAAA
GCACTAGCCGACTCGTCGAGGCGGCGAGAACTGACCGCGAAGAGAGAGAA
AGCCCTACAGCTTAGGCAGAGCTCGAAGGTTGATGTCCAGAAACTAATCG
CTCGAGATGGCTGCCTGTCTCAGCACGAGAATGACCGCCACCTGGTACGA
GATCCCCAGCTGTACTTACGGTGGACACCGATCTATCCGCATCCTCTTCC
CATGAGCTACGAGGTTGATGTCCAGAAACTAATCGCTCGAGATGGCTGCC
TGTCTCAGCACGAGAATGACCGCCACCTGGTACGAGATCCCCAGCTGTAC
TTACGGTGGACACCGATCTATCCGCATCCTCTTCCCATGAGCTACGAGCT
GTTTGAAAACGAGCGGGAGCTTCGGCGTCTGGCTGTCTTGCCTCCCGAGG
ACCGAGTTCTCGCCGCTGCGGCTGCTGGTCGCGCTTGGTGCGTGGAGGAG
CTCTTCGCGCAGGGGTGCCCGATCGAGGCCAAGCACCTGTTTGAAAACGA
GCGGGAGCTTCGGCGTCTGGCTGTCTTGCCTCCCGAGGACCGAGTTCTCG
CCGCTGCGGCTGCTGGTCGCGCTTGGTGCGTGGAGGAGCTCTTCGCGCAG
GGGTGCCCGATCGAGGCCAAGCACGGGTCAGGTTTCACGGCCCTTCACGT
AGCGGCCATGAGAAACGACCCAAATACCATAAGGGTTCTTCTAAACATGA
AGGTCGACGTCAATTCCACGAATGGGTCAGGTTTCACGGCCCTTCACGTA
GCGGCCATGAGAAACGACCCAAATACCATAAGGGTTCTTCTAAACATGAA
GGTCGACGTCAATTCCACGAATATGAGCGGGGCAACCCCACTTTCATGCG
CGATGGGAGGCGCAGGAGGACCAAACGGAGAGTGCGCCACCTTGCTGCGC
GCATCCGGAGGGCTGGTTCGTCTAGTACAGGACACGATCAATCCAGGGTC
CATTCTTGACGTTCCCTTGAGACGACCACGCAGAGCAATGGATGACAGGG
CAGATGCTCTCGGGAGGATGGTCTATACCGGGCAGTTCTAAATGAGCGGG
GCAACCCCACTTTCATGCGCGATGGGAGGCGCAGGAGGACCAAACGGAGA
GTGCGCCACCTTGCTGCGCGCATCCGGAGGGCTGGTTCGTCTAGTACAGG
ACACGATCAATCCAGGGTCCATTCTTGACGTTCCCTTGAGACGACCACGC
AGAGCAATGGATGACAGGGCAGATGCTCTCGGGAGGATGGTCTATACCGG
GCAGTTCTAA back to top
|