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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1124.825.1 vs. uniprot
Match: D7FTN4_ECTSI (DBR1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTN4_ECTSI) HSP 1 Score: 228 bits (580), Expect = 6.700e-68 Identity = 137/143 (95.80%), Postives = 138/143 (96.50%), Query Frame = 1
Query: 1 VDMPFETPRVQVEQMASIREALAARGLPGGPLVIPENFAMTAPPPSQMECQGQKSSKPPQSLLPNPQTDEFLAMLGLDHVVTVPCPGFQSRFGGGXXXXXXXXXXXXXXXXXXDAEESAVVQDDKYEIDLDAARDDPNEIQLD 429
VDMPFETPRVQVEQMASIREALAARGLPGGPLVIPENFAMTAPPPSQMECQGQKSSKPPQSLLPNPQTDEFLAMLGLDHVVTVPCPGFQSRFGG XXXXXXXXXXXXXXXXXD E +A VQDDKYEIDLDAARDDPNEIQLD
Sbjct: 314 VDMPFETPRVQVEQMASIREALAARGLPGGPLVIPENFAMTAPPPSQMECQGQKSSKPPQSLLPNPQTDEFLAMLGLDHVVTVPCPGFQSRFGG--XXXXXXXXXXXXXXXXXDEEGAAAVQDDKYEIDLDAARDDPNEIQLD 454
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 426 |
| Model size | 935 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko01000,ko03009 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| Ec32 ortholog | Ec-11_001760.1 |
| Ec32 ortholog description | Calcineurin-like phosphoesterase domain, apaH type |
| EggNOG OGs | KOG2863@1,KOG2863@2759 |
| EggNOG free text desc. | RNA lariat debranching enzyme activity |
| GOs | GO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006725,GO:0006807,GO:0007124,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008419,GO:0009056,GO:0009057,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016049,GO:0016070,GO:0016071,GO:0016074,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022414,GO:0030447,GO:0031070,GO:0032196,GO:0032197,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0040007,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044182,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045292,GO:0046483,GO:0046700,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070783,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575 |
| KEGG ko | ko:K18328 |
| Preferred name | DBR1 |
| Seed eggNOG ortholog | 2880.D7FTN4 |
| Seed ortholog evalue | 6.1e-57 |
| Seed ortholog score | 226.9 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1124.825.1 >prot_E-siliculosus-1a_F_contig1124.825.1 ID=prot_E-siliculosus-1a_F_contig1124.825.1|Name=mRNA_E-siliculosus-1a_F_contig1124.825.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
MPFETPRVQVEQMASIREALAARGLPGGPLVIPENFAMTAPPPSQMECQG
QKSSKPPQSLLPNPQTDEFLAMLGLDHVVTVPCPGFQSRFGGGGGGGEGG
GSGHGEGSGGGDAEESAVVQDDKYEIDLDAARDDPNEIQLD* back to topmRNA from alignment at E-siliculosus-1a_F_contig1124:780..2447+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1124.825.1 ID=mRNA_E-siliculosus-1a_F_contig1124.825.1|Name=mRNA_E-siliculosus-1a_F_contig1124.825.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1668bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1124:780..2447+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGACATGCCATTCGAGACACCACGAGTGCAGGTGGAGCAGATGGCTTC
TATCCGGGAAGCTCTGGCGGCACGGGGGCTGCCTGGCGGTCCCCTGGTGA
GGGAAGGGGGTGCTCATGTCGTCCTTGCCTGGCGTTTCTTGTCTAGGGAA
ACGGTTTGTTCTTGTGCCGGTGGTACCGTCTGTCCTTGCTCACGTCATCG
TCGTAGTTGTTATTGTTGTGGTGGTGGTGGTGGTTGTTGTTGTTGTTGTT
GTTGTTGTTTCCTGTTGGCCTTTCGTTTTGCCGCGGTCGGTTTGCTGCCC
GCTACGCTTAGGCAAAGCCCTATTTTTTCAGTCTTTCCGTCCGTTCGCCG
TCTGTTGTTTTTCACTTGGGGGCTTTCAGGTGATCCCTGAAAACTTCGCA
ATGACCGCACCCCCGCCGTCACAAATGGAGTGCCAAGGACAGGTGAGCAA
CCAGGTGTTTTATCTTCGCTCTGTCAGAGTGCCTCGACCCTTCCCACCGC
CAAGCGAAACGATCGGTGGCCACGAAGGATCTTCGGATGGTGGCGTTTTC
ACCACCTACACCGCAGTTCGTCCAGACGTCCTCTCAATTGCGGCCGTACT
GATAACCCTTTCGTTGTGCGATTCCCCTCTCTGCGCCGCGTCATAGAACC
GTGGAGGTTGCGGAGATGAAAATCACGGGCGTCGAGGCTGACCATCACGG
AAGTCGTGATCAATTGAAACCAACTCCTCCTGGAAACGTGCTGTCCTCGG
CTGCCCCGATCGAATCTTCTCTGCTGATGCTCCTTTTGCAGCTGCTGCTG
TGACACCTGTCTTTCCGTCTCTTTTTTTGTCGGCCTGACGCTCTCGCCTC
TTTCGTTTTCCTCGTCTCTTTGTGCGTCTTGGTTTGTCATAGAAATCCTC
GAAGCCGCCCCAGTCCCTCCTGCCCAACCCTCAGACAGACGAGTTTCTCG
CCATGCTCGGCCTCGACCACGTCGTCACCGTGCCATGTCCGGGGTTCCAA
TCGAGATTCGGCGGCGGCGGCGGCGGCGGCGAGGGAGGGGGCTCAGGACA
TGGAGAGGGAAGCGGAGGGGGTGACGCGGAGGAGTCGGCGGTGGTGCAGG
ACGACAAGTACGAGATCGATCTCGATGCTGCCAGGGACGATCCGAACGAG
ATCCAGCTCGATTGACGGGGTGTGCGTTGGTTACAATCTAGAACAAATTA
TCACCGGGATGTGACGAATATATTTAAGTACCGATATTACACAGGGGTGT
AAGAGACCTTTCCACTGATGTGTTGATGGGACTCCTGTGGGAGAGGCGGA
GCGGAGAGTTCCTGCTGCTGCGTCGGTGTATTGTGAGTAGTTTCCTCGAG
TACGTGGGCCGTGCACAATGGTGGGTGGGTGGGTGGAGAGCACCACCATG
AGTGGCCGCACAGGCACGAGGAAAGTGGCCCTTTCGCTGCGGTGGTATTC
TTTATTCAAGTTGCACGATTGCCAGTTCGAGTCAGGAGTGGCGGTGTCTT
GATGGAGCATCGTGACAGACGACTTGTGTATTCCTGACCAGGTGTGGCAG
AGATCCTCGGAACGAAACGCCAATTCAAACCTAGACCGGGAGAGGGTTTC
GGTTATGACGATCCGTGTGTGTGCGAAGCATGTTCGTTCATTGCTGTTAA
ATCCCGAGATTTGCTCTT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1124:780..2447+ >mRNA_E-siliculosus-1a_F_contig1124.825.1 ID=mRNA_E-siliculosus-1a_F_contig1124.825.1|Name=mRNA_E-siliculosus-1a_F_contig1124.825.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1124:780..2447+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCATTCGAGACACCACGAGTGCAGGTGGAGCAGATGGCTTCTATCCG
GGAAGCTCTGGCGGCACGGGGGCTGCCTGGCGGTCCCCTGATGCCATTCG
AGACACCACGAGTGCAGGTGGAGCAGATGGCTTCTATCCGGGAAGCTCTG
GCGGCACGGGGGCTGCCTGGCGGTCCCCTGGTGATCCCTGAAAACTTCGC
AATGACCGCACCCCCGCCGTCACAAATGGAGTGCCAAGGACAGGTGATCC
CTGAAAACTTCGCAATGACCGCACCCCCGCCGTCACAAATGGAGTGCCAA
GGACAGAAATCCTCGAAGCCGCCCCAGTCCCTCCTGCCCAACCCTCAGAC
AGACGAGTTTCTCGCCATGCTCGGCCTCGACCACGTCGTCACCGTGCCAT
GTCCGGGGTTCCAATCGAGATTCGGCGGCGGCGGCGGCGGCGGCGAGGGA
GGGGGCTCAGGACATGGAGAGGGAAGCGGAGGGGGTGACGCGGAGGAGTC
GGCGGTGGTGCAGGACGACAAGTACGAGATCGATCTCGATGCTGCCAGGG
ACGATCCGAACGAGATCCAGCTCGATTGAAAATCCTCGAAGCCGCCCCAG
TCCCTCCTGCCCAACCCTCAGACAGACGAGTTTCTCGCCATGCTCGGCCT
CGACCACGTCGTCACCGTGCCATGTCCGGGGTTCCAATCGAGATTCGGCG
GCGGCGGCGGCGGCGGCGAGGGAGGGGGCTCAGGACATGGAGAGGGAAGC
GGAGGGGGTGACGCGGAGGAGTCGGCGGTGGTGCAGGACGACAAGTACGA
GATCGATCTCGATGCTGCCAGGGACGATCCGAACGAGATCCAGCTCGATT
GA back to top
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