mRNA_E-siliculosus-1a_F_contig11222.818.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11222.818.1
Unique NamemRNA_E-siliculosus-1a_F_contig11222.818.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11222.818.1 vs. uniprot
Match: D8LR43_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LR43_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-10
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 YMEETAAPADFITFCSGIGIADMAQCEDDVYGSGA 105
            +ME+T +PA++ITFCSGIGIADMAQCEDDVYGSGA
Sbjct:   87 FMEKTGSPAEYITFCSGIGIADMAQCEDDVYGSGA 121
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11222.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR43_ECTSI1.010e-1082.86Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11222contigE-siliculosus-1a_F_contig11222:617..1781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size399
Model size402
Exons2
Ec32 orthologEc-06_004430.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11222.818.1prot_E-siliculosus-1a_F_contig11222.818.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11222 617..1778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927630.6296532-CDS-E-siliculosus-1a_F_contig11222:616..7501622927630.6296532-CDS-E-siliculosus-1a_F_contig11222:616..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11222 617..750 -
1696318617.6448526-CDS-E-siliculosus-1a_F_contig11222:616..7501696318617.6448526-CDS-E-siliculosus-1a_F_contig11222:616..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11222 617..750 -
1622927630.6792274-CDS-E-siliculosus-1a_F_contig11222:1513..17781622927630.6792274-CDS-E-siliculosus-1a_F_contig11222:1513..1778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11222 1514..1778 -
1696318617.6523557-CDS-E-siliculosus-1a_F_contig11222:1513..17781696318617.6523557-CDS-E-siliculosus-1a_F_contig11222:1513..1778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11222 1514..1778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927630.6904073-UTR-E-siliculosus-1a_F_contig11222:1778..17811622927630.6904073-UTR-E-siliculosus-1a_F_contig11222:1778..1781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11222 1779..1781 -
1696318617.6600108-UTR-E-siliculosus-1a_F_contig11222:1778..17811696318617.6600108-UTR-E-siliculosus-1a_F_contig11222:1778..1781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11222 1779..1781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11222.818.1

>prot_E-siliculosus-1a_F_contig11222.818.1 ID=prot_E-siliculosus-1a_F_contig11222.818.1|Name=mRNA_E-siliculosus-1a_F_contig11222.818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=133bp
MEETAAPADFITFCSGIGIADMAQCEDDVYGSGAGSGSMSSGGSAYGSGS
GAGGGSQGGSAYGSGSGAGGGAMSSTASGAGSGSGGIAGDSASGSALDSA
SEGVTAEYGSGNGSGAGSMSSSTATAIGTGDAS
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11222:617..1781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11222.818.1 ID=mRNA_E-siliculosus-1a_F_contig11222.818.1|Name=mRNA_E-siliculosus-1a_F_contig11222.818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11222:617..1781- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACATGGAAGAAACCGCCGCGCCCGCGGACTTCATCACGTTCTGTTCCGG
CATCGGCATCGCCGACATGGCCCAGTGCGAGGACGACGTGTACGGCAGCG
GGGCCGGGTCCGGGTCCATGTCCAGCGGGGGCTCCGCGTACGGATCCGGC
AGCGGGGCCGGAGGGGGGTCGCAAGGGGGCTCCGCATACGGATCTGGCAG
CGGGGCAGGAGGCGGGGCGATGTCGAGCACCGCCAGCGGTGCGGGCAGCG
GTTCGGGCGGAATTGCCGGTGAGCGTTTTTTGTTGTTGCATCGATGCCTT
TTTTTTAGAGTCTTGCACGCGTTGGTAGGGAAGAGATGTTTTTCCCAACA
GACTTCGTGTTGATAGTTCTTCTTCAGGCGGGGACACGGGCGGGGCGGTA
GCGCTCCATCCAGCGGAAGTGCTTTGTTTGGAGATAATGCAGGCGGTTTG
AGTTTGGTTTGCGAGAACAACGTTGACTTCGGCGATAAAAGCGAAGAAAG
GCCGCACCAGGGCCGCCCACCATGGCGGTCGGTTCACGCCGGGAAAATTT
ACTTAACTCCTATCCCTTTGAATGATTTTGCCATTAACAAACTGTGAAGG
TGACTTCACCTCCGATCAAAACCTAATGTGTACAACGTTACGCCCAAACC
GAAAACATGTAGGAGTACGCATATAATTGAGCTGAACACAGACACGTCAT
CAATCATGAGATATATATATATATTTTTTCTGGCGAGGAATTACCAAAAG
GAGAAACGCTCGAACAGGGAGGTTCTTGAATAGTTGCCGTGTCTGCCCAG
AATATGAAGTGGCGGGACGTACAACCACCGACGTGGTGTGCAAATGTTGC
GTTGTTCGCGGTAAGCGGCGGCTATAATACTGATCGGCCGGTGTGAACGG
CGTGTAGCGCGCAGCGCATCGTCATTCGTGATGGTGCGTAACACGAGCGT
CCAACACGCACTCTGCATTGCCTTTGGCCTCCATTGCCTTTGGCCTCCGC
CCCGCCGCGCCACCCTCCGCCGGTACGCCAGGCGACAGTGCTTCGGGCAG
CGCGCTCGACAGCGCGTCGGAGGGGGTGACCGCCGAGTACGGCAGCGGCA
ACGGCAGCGGTGCCGGGAGCATGTCGAGCAGCACGGCTACTGCCATCGGA
ACCGGGGACGCGAGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11222:617..1781-

>mRNA_E-siliculosus-1a_F_contig11222.818.1 ID=mRNA_E-siliculosus-1a_F_contig11222.818.1|Name=mRNA_E-siliculosus-1a_F_contig11222.818.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11222:617..1781- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGAAACCGCCGCGCCCGCGGACTTCATCACGTTCTGTTCCGGCAT
CGGCATCGCCGACATGGCCCAGTGCGAGGACGACGTGTACGGCAGCGGGG
CCGGGTCCGGGTCCATGTCCAGCGGGGGCTCCGCGTACGGATCCGGCAGC
GGGGCCGGAGGGGGGTCGCAAGGGGGCTCCGCATACGGATCTGGCAGCGG
GGCAGGAGGCGGGGCGATGTCGAGCACCGCCAGCGGTGCGGGCAGCGGTT
CGGGCGGAATTGCCGATGGAAGAAACCGCCGCGCCCGCGGACTTCATCAC
GTTCTGTTCCGGCATCGGCATCGCCGACATGGCCCAGTGCGAGGACGACG
TGTACGGCAGCGGGGCCGGGTCCGGGTCCATGTCCAGCGGGGGCTCCGCG
TACGGATCCGGCAGCGGGGCCGGAGGGGGGTCGCAAGGGGGCTCCGCATA
CGGATCTGGCAGCGGGGCAGGAGGCGGGGCGATGTCGAGCACCGCCAGCG
GTGCGGGCAGCGGTTCGGGCGGAATTGCCGGCGACAGTGCTTCGGGCAGC
GCGCTCGACAGCGCGTCGGAGGGGGTGACCGCCGAGTACGGCAGCGGCAA
CGGCAGCGGTGCCGGGAGCATGTCGAGCAGCACGGCTACTGCCATCGGAA
CCGGGGACGCGAGCGCGACAGTGCTTCGGGCAGCGCGCTCGACAGCGCGT
CGGAGGGGGTGACCGCCGAGTACGGCAGCGGCAACGGCAGCGGTGCCGGG
AGCATGTCGAGCAGCACGGCTACTGCCATCGGAACCGGGGACGCGAGC
back to top